Wall clock time and date at job start Sat Apr 11 2020 01:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35876 * 117.00068 * 2 1 4 4 C 1.39471 * 119.77983 * 0.02562 * 3 2 1 5 5 C 1.37946 * 120.61929 * 179.97438 * 4 3 2 6 6 C 1.39171 * 120.16218 * 359.74527 * 5 4 3 7 7 C 1.47843 * 120.21784 * 180.27556 * 6 5 4 8 8 C 1.39666 * 120.14949 * 129.93660 * 7 6 5 9 9 C 1.37918 * 119.84187 * 179.76934 * 8 7 6 10 10 C 1.38398 * 120.15596 * 0.50854 * 9 8 7 11 11 C 1.50696 * 119.84968 * 179.72184 * 10 9 8 12 12 H 1.09005 * 109.90939 * 158.91412 * 11 10 9 13 13 C 1.53990 * 109.91768 * 280.02299 * 11 10 9 14 14 C 1.54592 * 105.14295 * 120.57834 * 13 11 10 15 15 C 1.54938 * 102.92016 * 21.95836 * 14 13 11 16 16 N 1.47901 * 109.91708 * 37.61236 * 11 10 9 17 17 C 1.38405 * 120.30218 * 359.74195 * 10 9 8 18 18 C 1.37913 * 120.15042 * 0.02562 * 17 10 9 19 19 C 1.41893 * 119.56229 * 0.48555 * 6 5 4 20 20 C 1.40898 * 120.29933 * 179.78801 * 19 6 5 21 21 H 1.07999 * 120.00326 * 333.81082 * 20 19 6 22 22 C 1.40049 * 119.99844 * 153.80412 * 20 19 6 23 23 N 1.30784 * 119.99687 * 344.75133 * 22 20 19 24 24 Si 1.86797 * 120.00019 * 165.02471 * 22 20 19 25 25 H 1.48503 * 109.47176 * 269.72627 * 24 22 20 26 26 H 1.48505 * 109.46979 * 29.72466 * 24 22 20 27 27 H 1.48499 * 109.46978 * 149.72392 * 24 22 20 28 28 C 1.37930 * 119.78132 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46824 * 300.00033 * 1 2 3 30 30 H 1.08999 * 109.47416 * 59.99439 * 1 2 3 31 31 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.68912 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.91876 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.07563 * 0.02562 * 8 7 6 35 35 H 1.08005 * 119.92039 * 180.27517 * 9 8 7 36 36 H 1.09000 * 110.30957 * 239.49339 * 13 11 10 37 37 H 1.08995 * 110.31130 * 1.55701 * 13 11 10 38 38 H 1.09000 * 110.72700 * 140.31107 * 14 13 11 39 39 H 1.08994 * 110.72606 * 263.41847 * 14 13 11 40 40 H 1.08996 * 110.67223 * 81.02467 * 15 14 13 41 41 H 1.09007 * 110.66557 * 203.98822 * 15 14 13 42 42 H 1.00897 * 110.99972 * 335.82769 * 16 11 10 43 43 H 1.07999 * 119.91876 * 180.02562 * 17 10 9 44 44 H 1.08003 * 120.07663 * 179.97438 * 18 17 10 45 45 H 0.97002 * 119.99448 * 180.02562 * 23 22 20 46 46 H 1.07994 * 120.09298 * 359.96965 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2818 2.3774 0.0005 5 6 1.8900 3.6156 0.0011 6 6 3.2783 3.7127 0.0064 7 6 3.9314 5.0390 0.0132 8 6 4.9334 5.3228 0.9438 9 6 5.5418 6.5606 0.9413 10 6 5.1541 7.5239 0.0264 11 6 5.8191 8.8762 0.0339 12 1 5.6856 9.3609 -0.9333 13 6 5.2150 9.7517 1.1474 14 6 6.4035 10.1108 2.0684 15 6 7.6304 9.9163 1.1424 16 7 7.2600 8.7275 0.3326 17 6 4.1582 7.2512 -0.8952 18 6 3.5448 6.0160 -0.9070 19 6 4.0628 2.5304 0.0009 20 6 5.4695 2.6106 0.0017 21 1 5.9610 3.4813 -0.4067 22 6 6.2304 1.5613 0.5322 23 7 5.6611 0.6569 1.2861 24 14 8.0598 1.4579 0.1693 25 1 8.2758 0.6545 -1.0608 26 1 8.6028 2.8256 -0.0310 27 1 8.7552 0.8116 1.3112 28 6 3.4235 1.2776 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2038 2.3109 0.0005 33 1 1.2873 4.5117 0.0019 34 1 5.2341 4.5733 1.6609 35 1 6.3199 6.7799 1.6575 36 1 4.7787 10.6559 0.7229 37 1 4.4608 9.1926 1.7010 38 1 6.3332 11.1457 2.4031 39 1 6.4491 9.4334 2.9211 40 1 7.7724 10.7879 0.5036 41 1 8.5281 9.7207 1.7292 42 1 7.4377 7.8741 0.8409 43 1 3.8608 8.0074 -1.6066 44 1 2.7674 5.8046 -1.6264 45 1 6.1882 -0.0696 1.6538 46 1 4.0097 0.3706 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245359217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:05:14 Heat of formation + Delta-G solvation = -13.422144 kcal Electronic energy + Delta-G solvation = -26590.426944 eV Core-core repulsion = 23022.466585 eV Total energy + Delta-G solvation = -3567.960358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.92949 -40.36294 -38.96810 -37.65309 -35.45369 -33.21091 -31.98775 -31.41629 -30.76577 -30.53821 -28.68670 -27.23891 -26.96173 -24.16944 -23.36838 -22.83503 -22.00684 -21.58158 -20.77430 -19.53825 -18.10693 -17.96831 -17.01588 -16.80648 -16.48411 -16.35126 -16.31988 -15.77042 -15.49741 -15.02909 -14.66412 -14.59699 -14.54670 -14.28451 -14.06958 -13.92825 -13.55855 -13.47392 -13.05789 -12.87962 -12.85057 -12.72225 -12.52323 -12.37317 -12.25620 -12.06117 -11.96970 -11.71573 -11.62100 -11.55970 -11.31732 -11.29363 -11.01646 -9.75955 -9.66497 -9.39538 -9.33231 -8.74606 -8.38039 -6.35585 0.35802 0.67805 0.96319 1.23184 1.36589 1.48743 1.50927 2.18244 2.68006 2.77420 2.97449 3.42325 3.69545 3.72212 3.86148 4.08760 4.15448 4.20767 4.22737 4.28144 4.38403 4.45632 4.49844 4.55459 4.57601 4.62210 4.71362 4.73655 4.79553 4.93889 5.01144 5.04626 5.06155 5.12054 5.12966 5.23899 5.26419 5.32958 5.37228 5.52705 5.58461 5.72788 5.84504 5.91398 5.94278 5.97968 6.11346 6.20556 6.28784 6.39629 6.49948 6.88848 6.92413 7.04147 8.29479 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.003881 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.415928 B = 7213.632846 C = 9069.600700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.127 3.873 4 C -0.315 4.315 5 C -0.046 4.046 6 C -0.214 4.214 7 C -0.006 4.006 8 C -0.109 4.109 9 C -0.120 4.120 10 C -0.104 4.104 11 C 0.121 3.879 12 H 0.094 0.906 13 C -0.140 4.140 14 C -0.153 4.153 15 C 0.040 3.960 16 N -0.686 5.686 17 C -0.111 4.111 18 C -0.131 4.131 19 C 0.128 3.872 20 C -0.465 4.465 21 H 0.080 0.920 22 C 0.038 3.962 23 N -0.815 5.815 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.256 1.256 27 H -0.266 1.266 28 C -0.230 4.230 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.337 0.663 43 H 0.143 0.857 44 H 0.123 0.877 45 H 0.288 0.712 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 13.696 0.209 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.083 3.917 4 C -0.334 4.334 5 C -0.065 4.065 6 C -0.215 4.215 7 C -0.006 4.006 8 C -0.128 4.128 9 C -0.139 4.139 10 C -0.104 4.104 11 C 0.012 3.988 12 H 0.112 0.888 13 C -0.179 4.179 14 C -0.192 4.192 15 C -0.089 4.089 16 N -0.316 5.316 17 C -0.129 4.129 18 C -0.149 4.149 19 C 0.126 3.874 20 C -0.494 4.494 21 H 0.098 0.902 22 C -0.178 4.178 23 N -0.440 5.440 24 Si 0.792 3.208 25 H -0.189 1.189 26 H -0.180 1.180 27 H -0.191 1.191 28 C -0.250 4.250 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.099 0.901 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.628 13.523 -0.286 13.540 hybrid contribution -0.063 -1.008 0.965 1.397 sum -0.691 12.514 0.679 12.552 Atomic orbital electron populations 1.23147 0.77595 1.04541 1.01509 1.85970 1.22811 1.28356 1.89489 1.19131 0.92189 0.83940 0.96443 1.20689 0.98806 0.91762 1.22161 1.20688 0.93109 0.96381 0.96273 1.18931 0.92891 0.91906 1.17764 1.18814 0.95034 0.92280 0.94445 1.21227 0.96550 0.96293 0.98703 1.20797 1.00267 0.93019 0.99772 1.20042 0.98007 0.95804 0.96593 1.21259 0.86643 0.91120 0.99815 0.88810 1.22845 0.98510 0.99950 0.96643 1.23095 0.95078 1.02846 0.98198 1.23209 0.97471 0.93953 0.94240 1.62953 1.15847 1.05888 1.46892 1.21032 0.96492 0.96527 0.98885 1.21373 1.01234 0.93589 0.98703 1.17559 0.93575 0.89687 0.86621 1.19654 0.91299 1.03565 1.34878 0.90233 1.26733 1.05422 0.93599 0.92050 1.69887 1.40261 1.11319 1.22554 0.85356 0.76554 0.79893 0.79016 1.18900 1.17961 1.19090 1.20524 0.90605 0.98674 1.15240 0.92797 0.92372 0.86606 0.85482 0.86127 0.88117 0.85840 0.89669 0.92226 0.89217 0.92041 0.89461 0.89873 0.84380 0.83890 0.85908 0.90129 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.80 113.37 1.11 1.92 16 2 O -0.35 -15.55 10.48 -92.16 -0.97 -16.51 16 3 C 0.13 6.27 6.67 22.49 0.15 6.42 16 4 C -0.31 -13.75 9.02 22.50 0.20 -13.55 16 5 C -0.05 -2.03 9.48 22.42 0.21 -1.82 16 6 C -0.21 -10.32 5.53 -19.61 -0.11 -10.43 16 7 C -0.01 -0.24 4.91 -20.04 -0.10 -0.34 16 8 C -0.11 -4.52 7.99 22.54 0.18 -4.34 16 9 C -0.12 -4.02 8.96 22.23 0.20 -3.82 16 10 C -0.10 -3.05 4.76 -19.79 -0.09 -3.15 16 11 C 0.12 2.83 3.62 44.31 0.16 2.99 16 12 H 0.09 2.08 8.03 -2.38 -0.02 2.06 16 13 C -0.14 -2.72 6.56 31.47 0.21 -2.51 16 14 C -0.15 -2.53 7.06 31.80 0.22 -2.31 16 15 C 0.04 0.70 7.55 86.65 0.65 1.36 16 16 N -0.69 -16.11 7.39 -484.02 -3.58 -19.69 16 17 C -0.11 -3.33 9.66 22.23 0.21 -3.11 16 18 C -0.13 -4.68 9.51 22.54 0.21 -4.47 16 19 C 0.13 6.95 5.56 -21.14 -0.12 6.83 16 20 C -0.47 -24.77 7.14 23.36 0.17 -24.60 16 21 H 0.08 4.20 6.60 -2.91 -0.02 4.18 16 22 C 0.04 1.93 5.18 85.29 0.44 2.37 16 23 N -0.82 -43.27 10.90 21.85 0.24 -43.03 16 24 Si 0.97 38.87 29.59 68.60 2.03 40.90 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 27 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 28 C -0.23 -12.73 8.60 22.78 0.20 -12.53 16 29 H 0.05 1.54 7.64 -2.39 -0.02 1.52 16 30 H 0.06 1.61 7.65 -2.39 -0.02 1.59 16 31 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.13 4.64 6.25 -2.91 -0.02 4.63 16 33 H 0.12 4.51 8.03 -2.91 -0.02 4.49 16 34 H 0.10 4.64 7.32 -2.91 -0.02 4.61 16 35 H 0.12 3.61 6.55 -2.91 -0.02 3.59 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.33 7.68 -2.39 -0.02 1.31 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.34 8.43 6.17 -89.70 -0.55 7.87 16 43 H 0.14 3.34 8.05 -2.91 -0.02 3.31 16 44 H 0.12 4.09 8.04 -2.91 -0.02 4.07 16 45 H 0.29 13.91 8.29 -92.71 -0.77 13.14 16 46 H 0.10 6.08 6.17 -2.91 -0.02 6.06 16 Total: -1.00 -62.81 368.56 2.28 -60.52 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: 0.44 Total: 42.88 kcal Atomic # 6 Polarization: -69.20 SS G_CDS: 4.12 Total: -65.08 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -3.34 Total: -62.71 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.97 Total: -16.51 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -62.81 2.28 -60.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245359217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.103 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds