Wall clock time and date at job start Sat Apr 11 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47324 * 269.99876 * 3 2 1 5 5 H 1.48503 * 109.47126 * 30.00034 * 3 2 1 6 6 H 1.48504 * 109.47404 * 149.99576 * 3 2 1 7 7 C 1.40022 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.41314 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78471 * 180.02562 * 9 7 2 11 11 C 1.38347 * 119.14405 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68696 * 359.97438 * 11 10 9 13 13 C 1.39757 * 119.48785 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58523 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.47368 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.47473 * 179.97438 * 16 15 14 18 18 N 1.46906 * 109.47378 * 179.97438 * 17 16 15 19 19 C 1.47904 * 110.99725 * 170.00292 * 18 17 16 20 20 C 1.54600 * 102.62992 * 94.66435 * 19 18 17 21 21 C 1.51577 * 102.81467 * 25.60251 * 20 19 18 22 22 C 1.37918 * 131.56873 * 163.77286 * 21 20 19 23 23 C 1.38305 * 120.08094 * 180.28594 * 22 21 20 24 24 C 1.38305 * 119.88146 * 0.03064 * 23 22 21 25 25 C 1.37902 * 120.26493 * 359.85156 * 24 23 22 26 26 C 1.38956 * 107.94545 * 343.81200 * 21 20 19 27 27 N 1.31980 * 120.83134 * 0.24669 * 13 12 11 28 28 H 0.97002 * 119.99780 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.42954 * 0.02562 * 10 9 7 30 30 H 1.08003 * 120.65882 * 179.97438 * 11 10 9 31 31 H 1.07995 * 120.25995 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00541 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.47197 * 60.00148 * 15 14 13 34 34 H 1.09000 * 109.47175 * 300.00390 * 15 14 13 35 35 H 1.09004 * 109.47108 * 59.99956 * 16 15 14 36 36 H 1.09004 * 109.47368 * 300.00056 * 16 15 14 37 37 H 1.09004 * 109.46862 * 59.99962 * 17 16 15 38 38 H 1.09000 * 109.47250 * 299.99985 * 17 16 15 39 39 H 1.09001 * 110.77254 * 212.94604 * 19 18 17 40 40 H 1.09002 * 110.77969 * 336.18233 * 19 18 17 41 41 H 1.08994 * 110.74686 * 143.93559 * 20 19 18 42 42 H 1.09002 * 110.73933 * 267.27437 * 20 19 18 43 43 H 1.08008 * 119.96166 * 0.29238 * 22 21 20 44 44 H 1.07995 * 120.05593 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.86139 * 179.87740 * 24 23 22 46 46 H 1.08006 * 119.89955 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0005 10 6 2.0084 -3.6514 0.0016 11 6 1.3034 -4.8417 0.0011 12 6 -0.0822 -4.7944 0.0000 13 6 -0.7282 -3.5552 -0.0010 14 7 -2.1156 -3.5055 -0.0027 15 6 -2.8930 -4.7472 -0.0038 16 6 -4.3863 -4.4140 -0.0062 17 6 -5.1982 -5.7107 -0.0080 18 7 -6.6320 -5.3908 -0.0096 19 6 -7.4451 -6.6025 -0.2512 20 6 -7.7920 -7.0679 1.1817 21 6 -7.7127 -5.7826 1.9812 22 6 -8.1840 -5.4543 3.2351 23 6 -7.9796 -4.1837 3.7416 24 6 -7.3022 -3.2422 2.9882 25 6 -6.8269 -3.5662 1.7349 26 6 -7.0259 -4.8457 1.2186 27 7 -0.0360 -2.4315 -0.0059 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6555 0.0029 30 1 1.8220 -5.7891 0.0015 31 1 -0.6579 -5.7082 0.0000 32 1 -2.5703 -2.6486 -0.0030 33 1 -2.6514 -5.3280 0.8863 34 1 -2.6492 -5.3277 -0.8936 35 1 -4.6276 -3.8334 -0.8966 36 1 -4.6304 -3.8334 0.8834 37 1 -4.9569 -6.2917 0.8822 38 1 -4.9541 -6.2910 -0.8978 39 1 -8.3496 -6.3565 -0.8075 40 1 -6.8636 -7.3599 -0.7769 41 1 -8.7985 -7.4845 1.2193 42 1 -7.0599 -7.7915 1.5404 43 1 -8.7132 -6.1903 3.8222 44 1 -8.3492 -3.9269 4.7234 45 1 -7.1445 -2.2495 3.3833 46 1 -6.2983 -2.8265 1.1518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320358949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:06:06 Heat of formation + Delta-G solvation = 61.301259 kcal Electronic energy + Delta-G solvation = -25836.681512 eV Core-core repulsion = 22304.254155 eV Total energy + Delta-G solvation = -3532.427357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79104 -40.12472 -38.00637 -37.09415 -35.34977 -34.15955 -32.47286 -32.01444 -30.77234 -30.03201 -29.26456 -27.28255 -25.88736 -23.99446 -23.62531 -22.86070 -22.28103 -21.79684 -21.60862 -19.26057 -18.00948 -17.62282 -16.87599 -16.83828 -16.65841 -16.40891 -16.33429 -16.02898 -15.81969 -15.11691 -14.89057 -14.78232 -14.53878 -14.28472 -13.94898 -13.75008 -13.68842 -13.45366 -13.16165 -12.94182 -12.82518 -12.75848 -12.65653 -12.55882 -12.35784 -12.15296 -12.10616 -11.81372 -11.73947 -11.69272 -11.26440 -10.65694 -10.38263 -9.83648 -9.73899 -9.44664 -8.88010 -8.30066 -8.22542 -6.47943 0.35767 0.43517 1.06272 1.34543 1.41359 1.54678 1.58956 2.25210 2.46647 2.74541 2.86517 2.92822 3.62285 3.78667 3.91371 4.03581 4.04936 4.08693 4.15680 4.21503 4.25652 4.38002 4.44444 4.54043 4.55456 4.59829 4.64407 4.68472 4.76538 4.79013 4.90726 4.98769 5.00656 5.02277 5.07404 5.12692 5.18265 5.19837 5.38502 5.44455 5.50066 5.58975 5.71686 5.80738 5.95972 5.97414 6.07635 6.22922 6.30425 6.56131 6.83510 6.94528 7.21793 8.34639 8.51650 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.002537 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.157371 B =11034.740024 C =12157.276087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.344 4.344 11 C -0.030 4.030 12 C -0.367 4.367 13 C 0.393 3.607 14 N -0.735 5.735 15 C 0.147 3.853 16 C -0.118 4.118 17 C 0.071 3.929 18 N -0.507 5.507 19 C 0.048 3.952 20 C -0.105 4.105 21 C -0.154 4.154 22 C -0.098 4.098 23 C -0.137 4.137 24 C -0.116 4.116 25 C -0.130 4.130 26 C 0.073 3.927 27 N -0.567 5.567 28 H 0.276 0.724 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.392 0.608 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 -11.248 3.604 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.503 4.503 8 H 0.105 0.895 9 C 0.130 3.870 10 C -0.367 4.367 11 C -0.054 4.054 12 C -0.393 4.393 13 C 0.152 3.848 14 N -0.370 5.370 15 C 0.022 3.978 16 C -0.156 4.156 17 C -0.055 4.055 18 N -0.224 5.224 19 C -0.078 4.078 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.117 4.117 23 C -0.155 4.155 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.023 4.023 27 N -0.290 5.290 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.226 0.774 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.156 0.844 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.502 -10.229 3.122 22.242 hybrid contribution 0.914 -0.061 0.544 1.065 sum -18.588 -10.290 3.666 21.560 Atomic orbital electron populations 1.70258 1.08791 1.28642 1.29717 1.26978 0.95761 1.04410 0.92550 0.85154 0.78999 0.75805 0.79357 1.18812 1.19306 1.17990 1.19938 0.94612 0.90480 1.45287 0.89512 1.18704 0.87670 0.93274 0.87318 1.21702 0.99024 0.93774 1.22195 1.21017 0.93695 0.97218 0.93497 1.20949 0.95010 0.96025 1.27342 1.18988 0.85924 0.90373 0.89489 1.44311 1.01527 1.08293 1.82883 1.21103 0.90004 0.86011 1.00644 1.21706 0.92294 0.98648 1.02951 1.22052 0.85064 0.96102 1.02286 1.60148 1.04881 1.28190 1.29225 1.23296 0.98331 0.89747 0.96456 1.21717 1.04196 0.94261 0.94071 1.21367 1.02301 0.96531 0.95480 1.20727 0.99530 0.97199 0.94224 1.21386 0.99880 0.93327 1.00898 1.21226 0.97776 1.00687 0.93761 1.20773 1.02439 0.94826 0.96973 1.19718 0.98453 0.94265 0.89849 1.68184 1.08048 1.26160 1.26574 0.91388 0.87887 0.85191 0.86372 0.77438 0.93175 0.92299 0.91063 0.91868 0.93993 0.88143 0.88868 0.87724 0.87924 0.89491 0.84099 0.83567 0.84445 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.69 11.46 21.84 0.25 -41.44 16 2 C 0.02 1.30 5.50 85.29 0.47 1.77 16 3 Si 0.99 39.44 29.56 68.60 2.03 41.47 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.47 -26.77 9.14 23.46 0.21 -26.55 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.26 15.10 6.55 40.19 0.26 15.37 16 10 C -0.34 -18.02 9.83 22.87 0.22 -17.79 16 11 C -0.03 -1.39 10.15 22.39 0.23 -1.17 16 12 C -0.37 -16.98 9.34 22.73 0.21 -16.77 16 13 C 0.39 19.87 7.65 133.40 1.02 20.89 16 14 N -0.73 -30.43 5.72 -345.01 -1.97 -32.40 16 15 C 0.15 4.53 4.88 86.38 0.42 4.95 16 16 C -0.12 -3.00 5.19 30.59 0.16 -2.85 16 17 C 0.07 1.45 4.76 86.30 0.41 1.87 16 18 N -0.51 -10.63 5.06 -688.65 -3.48 -14.11 16 19 C 0.05 0.70 7.00 86.65 0.61 1.30 16 20 C -0.10 -1.45 6.97 30.67 0.21 -1.23 16 21 C -0.15 -3.03 6.23 -19.49 -0.12 -3.15 16 22 C -0.10 -1.74 10.03 22.21 0.22 -1.51 16 23 C -0.14 -2.44 10.06 22.30 0.22 -2.22 16 24 C -0.12 -2.42 10.02 22.21 0.22 -2.19 16 25 C -0.13 -3.14 8.55 22.47 0.19 -2.95 16 26 C 0.07 1.69 5.29 38.29 0.20 1.89 16 27 N -0.57 -32.97 7.89 -186.59 -1.47 -34.44 16 28 H 0.28 13.81 8.29 -92.71 -0.77 13.04 16 29 H 0.10 5.02 8.06 -2.92 -0.02 5.00 16 30 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.12 4.67 6.68 -2.91 -0.02 4.65 16 32 H 0.39 16.56 8.59 -92.71 -0.80 15.76 16 33 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 34 H 0.06 1.74 7.92 -2.39 -0.02 1.72 16 35 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 1.75 5.55 -2.39 -0.01 1.73 16 37 H 0.04 0.87 8.06 -2.38 -0.02 0.85 16 38 H 0.10 1.72 7.84 -2.39 -0.02 1.70 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.12 7.60 -2.39 -0.02 1.10 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.12 2.92 7.15 -2.91 -0.02 2.89 16 Total: -1.00 -69.73 374.44 0.93 -68.80 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: 0.19 Total: 42.47 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.38 Total: -30.35 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -6.68 Total: -122.39 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -69.73 0.93 -68.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320358949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.103 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds