Wall clock time and date at job start Sat Apr 11 2020 01:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48492 * 109.47309 * 270.00393 * 3 2 1 5 5 H 1.48502 * 109.46848 * 30.00084 * 3 2 1 6 6 H 1.48495 * 109.46980 * 149.99742 * 3 2 1 7 7 C 1.40022 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.41318 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.40590 * 119.78504 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.14723 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68224 * 0.02562 * 11 10 9 13 13 C 1.39765 * 119.49368 * 359.97438 * 12 11 10 14 14 N 1.38820 * 119.58823 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99837 * 359.72471 * 14 13 12 16 16 H 1.09008 * 109.50551 * 325.35236 * 15 14 13 17 17 C 1.53116 * 109.50389 * 85.47449 * 15 14 13 18 18 C 1.53119 * 109.16339 * 177.59557 * 17 15 14 19 19 C 1.53043 * 109.27821 * 302.34879 * 18 17 15 20 20 N 1.46839 * 109.52279 * 59.17385 * 19 18 17 21 21 C 1.39683 * 110.99919 * 174.16557 * 20 19 18 22 22 C 1.38908 * 120.07934 * 123.93123 * 21 20 19 23 23 C 1.38098 * 119.92503 * 179.76724 * 22 21 20 24 24 C 1.38278 * 120.07768 * 0.51515 * 23 22 21 25 25 C 1.38287 * 120.14809 * 359.73952 * 24 23 22 26 26 C 1.38102 * 120.07565 * 0.02562 * 25 24 23 27 27 C 1.46850 * 111.20438 * 298.25869 * 20 19 18 28 28 N 1.31978 * 120.82640 * 0.26236 * 13 12 11 29 29 H 0.97000 * 120.00631 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.42661 * 0.02562 * 10 9 7 31 31 H 1.08000 * 120.66077 * 180.02562 * 11 10 9 32 32 H 1.08003 * 120.25868 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00313 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.52180 * 297.49518 * 17 15 14 35 35 H 1.09003 * 109.52497 * 57.69119 * 17 15 14 36 36 H 1.08999 * 109.50910 * 182.40617 * 18 17 15 37 37 H 1.09005 * 109.53581 * 62.30004 * 18 17 15 38 38 H 1.09002 * 109.45702 * 299.16010 * 19 18 17 39 39 H 1.08996 * 109.45446 * 179.19386 * 19 18 17 40 40 H 1.08004 * 120.03133 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.96182 * 180.25626 * 23 22 21 42 42 H 1.08005 * 119.93090 * 179.72183 * 24 23 22 43 43 H 1.08004 * 119.96198 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.03780 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.45714 * 301.73291 * 27 20 19 46 46 H 1.08993 * 109.46383 * 181.76177 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3010 -2.4365 -0.0016 10 6 2.0086 -3.6514 -0.0016 11 6 1.3036 -4.8417 -0.0033 12 6 -0.0819 -4.7945 -0.0054 13 6 -0.7282 -3.5552 -0.0053 14 7 -2.1155 -3.5056 -0.0079 15 6 -2.8928 -4.7473 -0.0169 16 1 -2.3682 -5.5009 -0.6044 17 6 -3.0706 -5.2496 1.4186 18 6 -3.9342 -6.5139 1.4054 19 6 -5.2795 -6.2000 0.7467 20 7 -5.0555 -5.7243 -0.6243 21 6 -6.2665 -5.5535 -1.2990 22 6 -6.5825 -4.3235 -1.8619 23 6 -7.7785 -4.1596 -2.5325 24 6 -8.6660 -5.2151 -2.6347 25 6 -8.3570 -6.4394 -2.0710 26 6 -7.1605 -6.6116 -1.4032 27 6 -4.2682 -4.4846 -0.6343 28 7 -0.0360 -2.4315 -0.0084 29 1 -0.4851 0.8400 -0.0004 30 1 3.0885 -3.6553 -0.0004 31 1 1.8223 -5.7890 -0.0029 32 1 -0.6576 -5.7083 -0.0071 33 1 -2.5702 -2.6488 -0.0083 34 1 -2.0952 -5.4792 1.8475 35 1 -3.5602 -4.4802 2.0157 36 1 -4.0999 -6.8521 2.4282 37 1 -3.4265 -7.2962 0.8411 38 1 -5.7930 -5.4279 1.3198 39 1 -5.8912 -7.1018 0.7229 40 1 -5.8915 -3.4976 -1.7788 41 1 -8.0229 -3.2047 -2.9740 42 1 -9.6028 -5.0829 -3.1558 43 1 -9.0522 -7.2619 -2.1530 44 1 -6.9200 -7.5680 -0.9628 45 1 -4.7865 -3.7207 -0.0548 46 1 -4.1457 -4.1406 -1.6613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:06:26 Heat of formation + Delta-G solvation = 75.367219 kcal Electronic energy + Delta-G solvation = -26484.677108 eV Core-core repulsion = 22952.859696 eV Total energy + Delta-G solvation = -3531.817412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.51310 -38.57129 -37.68941 -35.14880 -33.45075 -32.85085 -31.35026 -30.48221 -29.87558 -29.06815 -27.72366 -25.43010 -24.62186 -23.62322 -21.80999 -21.54981 -21.39800 -20.32647 -19.64125 -17.85634 -17.26129 -16.43283 -15.93857 -15.41002 -15.07367 -14.95921 -14.71622 -14.59016 -14.19603 -13.94059 -13.76029 -13.61589 -13.47864 -13.28775 -12.83082 -12.65843 -12.34830 -12.30625 -11.94056 -11.59146 -11.41305 -11.27731 -11.12746 -10.97589 -10.90570 -10.69632 -10.61066 -10.50069 -10.36159 -9.89412 -9.75810 -9.47778 -9.07121 -8.87970 -7.94056 -7.90388 -7.49978 -6.51926 -6.31925 -4.46012 1.25729 1.27372 2.88409 3.11464 3.14748 3.25031 3.30557 3.39388 3.70845 3.99051 4.29678 4.68063 4.74602 4.82728 4.86144 4.91680 4.96172 5.03040 5.13067 5.25679 5.29145 5.39298 5.45932 5.51203 5.63574 5.73254 5.77635 5.83135 5.95329 6.02776 6.08341 6.18077 6.18955 6.28148 6.33468 6.42501 6.44468 6.63698 6.68236 6.85481 6.86669 6.92110 6.99197 7.19225 7.25998 7.61170 7.82706 7.93978 8.17295 8.37296 8.68077 8.81390 9.13074 10.25487 10.41285 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002845 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.503912 B = 9838.482617 C =11001.968545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.365 4.365 13 C 0.414 3.586 14 N -0.733 5.733 15 C 0.171 3.829 16 H 0.086 0.914 17 C -0.138 4.138 18 C -0.116 4.116 19 C 0.059 3.941 20 N -0.485 5.485 21 C 0.119 3.881 22 C -0.172 4.172 23 C -0.093 4.093 24 C -0.153 4.153 25 C -0.097 4.097 26 C -0.143 4.143 27 C 0.047 3.953 28 N -0.532 5.532 29 H 0.269 0.731 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.049 0.951 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 -9.232 -0.639 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.340 4.340 11 C -0.057 4.057 12 C -0.391 4.391 13 C 0.175 3.825 14 N -0.369 5.369 15 C 0.063 3.937 16 H 0.104 0.896 17 C -0.177 4.177 18 C -0.155 4.155 19 C -0.066 4.066 20 N -0.200 5.200 21 C 0.021 3.979 22 C -0.193 4.193 23 C -0.112 4.112 24 C -0.172 4.172 25 C -0.116 4.116 26 C -0.164 4.164 27 C -0.080 4.080 28 N -0.253 5.253 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.228 0.772 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.067 0.933 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.190 -8.851 -0.826 18.469 hybrid contribution 0.283 0.761 0.279 0.859 sum -15.907 -8.089 -0.547 17.854 Atomic orbital electron populations 1.70150 1.07120 1.27259 1.29279 1.26041 0.94857 1.00880 0.93565 0.86385 0.80518 0.81090 0.79124 1.19518 1.20284 1.18614 1.19576 0.94141 0.89395 1.43550 0.89932 1.18195 0.86888 0.91839 0.86534 1.21532 0.98405 0.93490 1.20525 1.20601 0.93492 0.96345 0.95243 1.20636 0.94526 0.95552 1.28416 1.18461 0.84049 0.90266 0.89772 1.44071 1.02795 1.06256 1.83758 1.20546 0.89898 0.88147 0.95074 0.89627 1.22157 1.00727 0.96715 0.98132 1.21608 0.94774 0.98758 1.00331 1.22277 0.98207 1.00086 0.86050 1.58879 1.14579 1.30533 1.15960 1.19001 0.88811 0.93193 0.96943 1.21424 0.98353 0.96453 1.03043 1.21021 0.93651 0.98831 0.97668 1.21047 1.00055 0.93669 1.02414 1.20985 0.96327 0.97292 0.97004 1.20778 0.94467 0.98078 1.03054 1.22488 0.93891 0.89481 1.02182 1.68201 1.07682 1.24370 1.25035 0.92008 0.88764 0.88986 0.89001 0.77191 0.90621 0.92135 0.91019 0.90800 0.93858 0.90139 0.85362 0.86133 0.86403 0.86107 0.85840 0.93315 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.02 11.46 55.55 0.64 -18.38 16 2 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 3 Si 0.90 18.80 29.56 -169.99 -5.02 13.78 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.43 -11.82 9.14 -37.74 -0.34 -12.17 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.29 8.17 6.55 -84.99 -0.56 7.61 16 10 C -0.32 -8.05 9.83 -38.66 -0.38 -8.43 16 11 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 12 C -0.37 -8.36 8.89 -38.86 -0.35 -8.71 16 13 C 0.41 9.98 7.63 -155.32 -1.19 8.80 16 14 N -0.73 -14.37 5.24 -53.83 -0.28 -14.65 16 15 C 0.17 2.66 2.29 -67.85 -0.16 2.51 16 16 H 0.09 1.46 6.43 -51.92 -0.33 1.13 16 17 C -0.14 -1.93 5.51 -26.61 -0.15 -2.08 16 18 C -0.12 -1.28 6.09 -26.65 -0.16 -1.44 16 19 C 0.06 0.62 5.26 -3.84 -0.02 0.60 16 20 N -0.48 -5.94 4.70 -171.15 -0.80 -6.75 16 21 C 0.12 1.42 5.64 -83.78 -0.47 0.94 16 22 C -0.17 -2.01 8.82 -39.38 -0.35 -2.36 16 23 C -0.09 -0.96 10.04 -39.62 -0.40 -1.35 16 24 C -0.15 -1.44 10.04 -39.55 -0.40 -1.83 16 25 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 26 C -0.14 -1.50 9.16 -39.38 -0.36 -1.86 16 27 C 0.05 0.63 3.62 -3.83 -0.01 0.62 16 28 N -0.53 -14.63 7.89 -10.33 -0.08 -14.71 16 29 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 30 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.89 6.03 -52.48 -0.32 1.57 16 33 H 0.39 7.72 8.72 -40.82 -0.36 7.37 16 34 H 0.08 1.20 7.67 -51.93 -0.40 0.80 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.73 6.70 -51.93 -0.35 0.38 16 40 H 0.13 1.48 5.81 -52.48 -0.30 1.17 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 44 H 0.12 1.13 7.15 -52.49 -0.38 0.75 16 45 H 0.05 0.63 7.72 -51.93 -0.40 0.23 16 46 H 0.09 1.23 6.99 -51.93 -0.36 0.86 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -29.73 366.59 -12.76 -42.49 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -6.55 Total: 12.56 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -6.18 Total: -19.87 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.53 Total: -54.48 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.73 -12.76 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.862 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds