Wall clock time and date at job start Sat Apr 11 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48492 * 109.47309 * 270.00393 * 3 2 1 5 5 H 1.48502 * 109.46848 * 30.00084 * 3 2 1 6 6 H 1.48495 * 109.46980 * 149.99742 * 3 2 1 7 7 C 1.40022 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.41318 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.40590 * 119.78504 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.14723 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68224 * 0.02562 * 11 10 9 13 13 C 1.39765 * 119.49368 * 359.97438 * 12 11 10 14 14 N 1.38820 * 119.58823 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99837 * 359.72471 * 14 13 12 16 16 H 1.09008 * 109.50551 * 325.35236 * 15 14 13 17 17 C 1.53116 * 109.50389 * 85.47449 * 15 14 13 18 18 C 1.53119 * 109.16339 * 177.59557 * 17 15 14 19 19 C 1.53043 * 109.27821 * 302.34879 * 18 17 15 20 20 N 1.46839 * 109.52279 * 59.17385 * 19 18 17 21 21 C 1.39683 * 110.99919 * 174.16557 * 20 19 18 22 22 C 1.38908 * 120.07934 * 123.93123 * 21 20 19 23 23 C 1.38098 * 119.92503 * 179.76724 * 22 21 20 24 24 C 1.38278 * 120.07768 * 0.51515 * 23 22 21 25 25 C 1.38287 * 120.14809 * 359.73952 * 24 23 22 26 26 C 1.38102 * 120.07565 * 0.02562 * 25 24 23 27 27 C 1.46850 * 111.20438 * 298.25869 * 20 19 18 28 28 N 1.31978 * 120.82640 * 0.26236 * 13 12 11 29 29 H 0.97000 * 120.00631 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.42661 * 0.02562 * 10 9 7 31 31 H 1.08000 * 120.66077 * 180.02562 * 11 10 9 32 32 H 1.08003 * 120.25868 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00313 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.52180 * 297.49518 * 17 15 14 35 35 H 1.09003 * 109.52497 * 57.69119 * 17 15 14 36 36 H 1.08999 * 109.50910 * 182.40617 * 18 17 15 37 37 H 1.09005 * 109.53581 * 62.30004 * 18 17 15 38 38 H 1.09002 * 109.45702 * 299.16010 * 19 18 17 39 39 H 1.08996 * 109.45446 * 179.19386 * 19 18 17 40 40 H 1.08004 * 120.03133 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.96182 * 180.25626 * 23 22 21 42 42 H 1.08005 * 119.93090 * 179.72183 * 24 23 22 43 43 H 1.08004 * 119.96198 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.03780 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.45714 * 301.73291 * 27 20 19 46 46 H 1.08993 * 109.46383 * 181.76177 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3010 -2.4365 -0.0016 10 6 2.0086 -3.6514 -0.0016 11 6 1.3036 -4.8417 -0.0033 12 6 -0.0819 -4.7945 -0.0054 13 6 -0.7282 -3.5552 -0.0053 14 7 -2.1155 -3.5056 -0.0079 15 6 -2.8928 -4.7473 -0.0169 16 1 -2.3682 -5.5009 -0.6044 17 6 -3.0706 -5.2496 1.4186 18 6 -3.9342 -6.5139 1.4054 19 6 -5.2795 -6.2000 0.7467 20 7 -5.0555 -5.7243 -0.6243 21 6 -6.2665 -5.5535 -1.2990 22 6 -6.5825 -4.3235 -1.8619 23 6 -7.7785 -4.1596 -2.5325 24 6 -8.6660 -5.2151 -2.6347 25 6 -8.3570 -6.4394 -2.0710 26 6 -7.1605 -6.6116 -1.4032 27 6 -4.2682 -4.4846 -0.6343 28 7 -0.0360 -2.4315 -0.0084 29 1 -0.4851 0.8400 -0.0004 30 1 3.0885 -3.6553 -0.0004 31 1 1.8223 -5.7890 -0.0029 32 1 -0.6576 -5.7083 -0.0071 33 1 -2.5702 -2.6488 -0.0083 34 1 -2.0952 -5.4792 1.8475 35 1 -3.5602 -4.4802 2.0157 36 1 -4.0999 -6.8521 2.4282 37 1 -3.4265 -7.2962 0.8411 38 1 -5.7930 -5.4279 1.3198 39 1 -5.8912 -7.1018 0.7229 40 1 -5.8915 -3.4976 -1.7788 41 1 -8.0229 -3.2047 -2.9740 42 1 -9.6028 -5.0829 -3.1558 43 1 -9.0522 -7.2619 -2.1530 44 1 -6.9200 -7.5680 -0.9628 45 1 -4.7865 -3.7207 -0.0548 46 1 -4.1457 -4.1406 -1.6613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:06:25 Heat of formation + Delta-G solvation = 59.952594 kcal Electronic energy + Delta-G solvation = -26485.345536 eV Core-core repulsion = 22952.859696 eV Total energy + Delta-G solvation = -3532.485840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46764 -40.16091 -38.89659 -36.57155 -35.19628 -34.02910 -32.48719 -32.08816 -31.33154 -30.01422 -29.23883 -27.31186 -25.64815 -24.68757 -23.40590 -22.79023 -22.46769 -21.79256 -20.82285 -19.30610 -18.59312 -18.09054 -16.91413 -16.62723 -16.50760 -16.28613 -15.97003 -15.87037 -15.46599 -15.24562 -15.10359 -14.74042 -14.56918 -14.39909 -14.33012 -14.00260 -13.69044 -13.59797 -13.29256 -12.92429 -12.75992 -12.62758 -12.49285 -12.37344 -12.16954 -12.08265 -11.89187 -11.75641 -11.72760 -11.56008 -11.23827 -10.67833 -10.61472 -9.84913 -9.83970 -9.44870 -8.80520 -8.31673 -8.23052 -6.47563 0.46426 0.49815 1.06043 1.34743 1.40924 1.53883 1.58401 2.24547 2.28377 2.81094 2.92326 3.06617 3.66856 3.74175 3.93212 3.98255 4.06768 4.08709 4.15946 4.20543 4.31585 4.39385 4.44358 4.48270 4.57010 4.61881 4.65350 4.70930 4.78205 4.86796 4.89890 4.97504 5.00913 5.04142 5.11872 5.15591 5.21072 5.33393 5.34910 5.40616 5.53290 5.66925 5.71973 5.87064 5.95750 5.98985 6.09037 6.22310 6.33943 6.55327 6.82811 6.93024 7.21379 8.34115 8.51036 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002845 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.503912 B = 9838.482617 C =11001.968545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.344 4.344 11 C -0.031 4.031 12 C -0.363 4.363 13 C 0.400 3.600 14 N -0.728 5.728 15 C 0.172 3.828 16 H 0.074 0.926 17 C -0.131 4.131 18 C -0.107 4.107 19 C 0.059 3.941 20 N -0.489 5.489 21 C 0.098 3.902 22 C -0.192 4.192 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.097 4.097 26 C -0.148 4.148 27 C 0.061 3.939 28 N -0.565 5.565 29 H 0.275 0.725 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.391 0.609 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.049 0.951 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 -10.477 -0.632 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.503 4.503 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.367 4.367 11 C -0.055 4.055 12 C -0.389 4.389 13 C 0.160 3.840 14 N -0.362 5.362 15 C 0.066 3.934 16 H 0.092 0.908 17 C -0.171 4.171 18 C -0.145 4.145 19 C -0.066 4.066 20 N -0.204 5.204 21 C 0.001 3.999 22 C -0.213 4.213 23 C -0.122 4.122 24 C -0.173 4.173 25 C -0.116 4.116 26 C -0.169 4.169 27 C -0.067 4.067 28 N -0.288 5.288 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.225 0.775 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.068 0.932 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.949 -10.141 -0.819 20.632 hybrid contribution 0.670 1.020 0.242 1.244 sum -17.279 -9.121 -0.578 19.547 Atomic orbital electron populations 1.70246 1.08727 1.28609 1.29765 1.26949 0.95756 1.04320 0.92559 0.85170 0.79024 0.75906 0.79321 1.18880 1.19307 1.18043 1.19927 0.94581 0.90496 1.45310 0.89609 1.18677 0.87664 0.93191 0.87306 1.21686 0.98974 0.93775 1.22223 1.21007 0.93758 0.97151 0.93579 1.20940 0.94838 0.96036 1.27056 1.18867 0.85634 0.90232 0.89283 1.44228 1.01544 1.07687 1.82743 1.20699 0.90335 0.86058 0.96328 0.90837 1.22056 1.00401 0.98250 0.96367 1.21570 0.94272 0.96820 1.01860 1.22360 0.98135 1.00942 0.85128 1.58932 1.15032 1.29445 1.16999 1.19161 0.89123 0.93917 0.97710 1.21501 0.99119 0.96496 1.04211 1.21269 0.93357 0.99998 0.97543 1.21400 1.00638 0.93346 1.01874 1.21357 0.96250 0.98078 0.95872 1.21007 0.94539 0.98131 1.03173 1.22225 0.92838 0.90456 1.01179 1.68177 1.07984 1.26121 1.26486 0.91406 0.88013 0.85402 0.86560 0.77519 0.92583 0.92458 0.88748 0.90689 0.93967 0.87895 0.86338 0.84849 0.84013 0.83339 0.84445 0.93237 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.16 11.46 21.84 0.25 -40.91 16 2 C 0.03 1.35 5.50 85.29 0.47 1.82 16 3 Si 0.99 39.20 29.56 68.60 2.03 41.23 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.47 -26.57 9.14 23.46 0.21 -26.36 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.26 15.02 6.55 40.19 0.26 15.28 16 10 C -0.34 -17.89 9.83 22.87 0.22 -17.67 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.36 -16.61 8.89 22.73 0.20 -16.41 16 13 C 0.40 19.81 7.63 133.40 1.02 20.83 16 14 N -0.73 -29.39 5.24 -324.21 -1.70 -31.09 16 15 C 0.17 5.39 2.29 45.04 0.10 5.50 16 16 H 0.07 2.50 6.43 -2.38 -0.02 2.48 16 17 C -0.13 -3.61 5.51 30.67 0.17 -3.45 16 18 C -0.11 -2.13 6.09 30.65 0.19 -1.95 16 19 C 0.06 1.13 5.26 86.33 0.45 1.59 16 20 N -0.49 -11.50 4.70 -695.39 -3.27 -14.77 16 21 C 0.10 2.24 5.64 38.21 0.22 2.46 16 22 C -0.19 -4.45 8.82 22.40 0.20 -4.25 16 23 C -0.10 -2.00 10.04 22.25 0.22 -1.78 16 24 C -0.15 -2.51 10.04 22.29 0.22 -2.28 16 25 C -0.10 -1.52 10.04 22.25 0.22 -1.30 16 26 C -0.15 -2.76 9.16 22.40 0.21 -2.55 16 27 C 0.06 1.65 3.62 86.33 0.31 1.96 16 28 N -0.57 -32.32 7.89 -186.58 -1.47 -33.79 16 29 H 0.28 13.64 8.29 -92.71 -0.77 12.87 16 30 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 32 H 0.12 4.66 6.03 -2.91 -0.02 4.64 16 33 H 0.39 16.04 8.72 -92.71 -0.81 15.23 16 34 H 0.06 1.76 7.67 -2.39 -0.02 1.74 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 1.55 6.70 -2.39 -0.02 1.53 16 40 H 0.12 2.85 5.81 -2.91 -0.02 2.83 16 41 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 44 H 0.14 2.09 7.15 -2.91 -0.02 2.07 16 45 H 0.05 1.32 7.72 -2.39 -0.02 1.30 16 46 H 0.08 2.21 6.99 -2.39 -0.02 2.19 16 Total: -1.00 -66.66 366.59 1.16 -65.50 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: 0.19 Total: 43.58 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 5.13 Total: -29.76 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -6.19 Total: -120.55 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -66.66 1.16 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.455 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds