Wall clock time and date at job start Sat Apr 11 2020 01:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48503 * 109.47237 * 274.98530 * 3 2 1 5 5 H 1.48496 * 109.47281 * 34.98720 * 3 2 1 6 6 H 1.48503 * 109.47229 * 154.98542 * 3 2 1 7 7 C 1.40025 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99908 * 186.34833 * 7 2 1 9 9 C 1.41320 * 119.99790 * 6.34504 * 7 2 1 10 10 C 1.40592 * 119.78046 * 173.77632 * 9 7 2 11 11 C 1.38351 * 119.14659 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.67952 * 0.02562 * 11 10 9 13 13 C 1.39749 * 119.49067 * 359.97438 * 12 11 10 14 14 N 1.38832 * 119.58485 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99639 * 359.97438 * 14 13 12 16 16 H 1.09003 * 109.53340 * 34.90932 * 15 14 13 17 17 C 1.53097 * 109.49281 * 274.81136 * 15 14 13 18 18 C 1.53115 * 109.15401 * 182.39935 * 17 15 14 19 19 C 1.53042 * 109.28077 * 57.65653 * 18 17 15 20 20 N 1.46841 * 109.51877 * 300.82033 * 19 18 17 21 21 C 1.39678 * 110.99795 * 185.83963 * 20 19 18 22 22 C 1.38915 * 120.07424 * 235.50856 * 21 20 19 23 23 C 1.38107 * 119.92145 * 179.76355 * 22 21 20 24 24 C 1.38281 * 120.07395 * 0.51802 * 23 22 21 25 25 C 1.38275 * 120.15509 * 359.73662 * 24 23 22 26 26 C 1.38108 * 120.07374 * 0.02562 * 25 24 23 27 27 C 1.46846 * 111.20454 * 61.73940 * 20 19 18 28 28 N 1.31978 * 120.83465 * 0.25642 * 13 12 11 29 29 H 0.97006 * 120.00262 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.42709 * 359.97438 * 10 9 7 31 31 H 1.07995 * 120.65913 * 179.97438 * 11 10 9 32 32 H 1.07999 * 120.25114 * 180.02562 * 12 11 10 33 33 H 0.97000 * 120.00111 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.52395 * 62.49735 * 17 15 14 35 35 H 1.08996 * 109.57387 * 302.33244 * 17 15 14 36 36 H 1.09003 * 109.50897 * 297.71230 * 18 17 15 37 37 H 1.09005 * 109.53164 * 177.61499 * 18 17 15 38 38 H 1.09002 * 109.46344 * 180.80079 * 19 18 17 39 39 H 1.08993 * 109.46043 * 60.83395 * 19 18 17 40 40 H 1.07998 * 120.03757 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.95724 * 180.25789 * 23 22 21 42 42 H 1.08009 * 119.92179 * 179.76510 * 24 23 22 43 43 H 1.08000 * 119.96683 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.03815 * 180.02562 * 26 25 24 45 45 H 1.09008 * 109.45945 * 58.27097 * 27 20 19 46 46 H 1.08997 * 109.46493 * 178.25080 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 0.1029 9 6 1.3074 -2.4327 -0.1363 10 6 2.0214 -3.6366 -0.2682 11 6 1.3227 -4.8233 -0.4008 12 6 -0.0631 -4.7832 -0.3996 13 6 -0.7157 -3.5548 -0.2650 14 7 -2.1034 -3.5123 -0.2641 15 6 -2.8741 -4.7502 -0.4043 16 1 -2.3511 -5.5641 0.0979 17 6 -3.0360 -5.0858 -1.8892 18 6 -3.8929 -6.3471 -2.0287 19 6 -5.2458 -6.1163 -1.3516 20 7 -5.0368 -5.7993 0.0668 21 6 -6.2549 -5.7120 0.7449 22 6 -6.5775 -4.5601 1.4512 23 6 -7.7848 -4.4753 2.1164 24 6 -8.6673 -5.5395 2.0890 25 6 -8.3471 -6.6896 1.3913 26 6 -7.1437 -6.7793 0.7198 27 6 -4.2564 -4.5656 0.2260 28 7 -0.0295 -2.4339 -0.1442 29 1 -0.4851 0.8401 0.0004 30 1 3.1014 -3.6350 -0.2667 31 1 1.8464 -5.7621 -0.5041 32 1 -0.6339 -5.6944 -0.5012 33 1 -2.5625 -2.6629 -0.1714 34 1 -2.0556 -5.2607 -2.3321 35 1 -3.5238 -4.2557 -2.4001 36 1 -3.3859 -7.1861 -1.5522 37 1 -4.0475 -6.5677 -3.0850 38 1 -5.8530 -7.0175 -1.4368 39 1 -5.7582 -5.2861 -1.8377 40 1 -5.8868 -3.7302 1.4764 41 1 -8.0380 -3.5784 2.6622 42 1 -9.6092 -5.4720 2.6133 43 1 -9.0385 -7.5191 1.3722 44 1 -6.8943 -7.6777 0.1747 45 1 -4.7735 -3.7425 -0.2675 46 1 -4.1449 -4.3406 1.2866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:06:30 Heat of formation + Delta-G solvation = 75.235491 kcal Electronic energy + Delta-G solvation = -26482.028393 eV Core-core repulsion = 22950.205269 eV Total energy + Delta-G solvation = -3531.823124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.51330 -38.57416 -37.69158 -35.15011 -33.45071 -32.85181 -31.35069 -30.48546 -29.87855 -29.06972 -27.72533 -25.43147 -24.62296 -23.62558 -21.80871 -21.55097 -21.39795 -20.32791 -19.64252 -17.85807 -17.26347 -16.43297 -15.93785 -15.41021 -15.07652 -14.95880 -14.72010 -14.58948 -14.19523 -13.94317 -13.76195 -13.61709 -13.48025 -13.29038 -12.83101 -12.65946 -12.34870 -12.31602 -11.94269 -11.58770 -11.41598 -11.28032 -11.13580 -10.97747 -10.90625 -10.68502 -10.62351 -10.50587 -10.35917 -9.89561 -9.76559 -9.46227 -9.07072 -8.87969 -7.93703 -7.90528 -7.49869 -6.52000 -6.33165 -4.45873 1.25775 1.27397 2.87909 3.11604 3.15185 3.24702 3.30427 3.39028 3.70749 3.99118 4.29522 4.68008 4.74441 4.82697 4.85582 4.91609 4.96017 5.03150 5.13001 5.25659 5.29150 5.39245 5.45834 5.51120 5.63437 5.73121 5.77572 5.83003 5.95303 6.02478 6.07494 6.18189 6.18909 6.28132 6.33356 6.42541 6.44417 6.63636 6.68180 6.85366 6.86580 6.91957 6.99303 7.19102 7.25778 7.61072 7.82474 7.93673 8.17621 8.37137 8.67979 8.81313 9.12824 10.25090 10.40979 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002827 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.738321 B = 9903.843104 C =11008.240831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.083 0.917 9 C 0.293 3.707 10 C -0.316 4.316 11 C -0.033 4.033 12 C -0.365 4.365 13 C 0.414 3.586 14 N -0.733 5.733 15 C 0.171 3.829 16 H 0.086 0.914 17 C -0.138 4.138 18 C -0.116 4.116 19 C 0.059 3.941 20 N -0.485 5.485 21 C 0.119 3.881 22 C -0.172 4.172 23 C -0.093 4.093 24 C -0.153 4.153 25 C -0.097 4.097 26 C -0.144 4.144 27 C 0.047 3.953 28 N -0.532 5.532 29 H 0.269 0.731 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.049 0.951 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.881 -9.345 -0.498 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.101 0.899 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.391 4.391 13 C 0.175 3.825 14 N -0.369 5.369 15 C 0.063 3.937 16 H 0.104 0.896 17 C -0.178 4.178 18 C -0.155 4.155 19 C -0.066 4.066 20 N -0.199 5.199 21 C 0.021 3.979 22 C -0.193 4.193 23 C -0.112 4.112 24 C -0.172 4.172 25 C -0.116 4.116 26 C -0.164 4.164 27 C -0.080 4.080 28 N -0.253 5.253 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.228 0.772 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.067 0.933 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.137 -8.989 -0.280 18.474 hybrid contribution 0.281 0.794 -0.313 0.898 sum -15.857 -8.195 -0.593 17.859 Atomic orbital electron populations 1.70156 1.07144 1.27264 1.29258 1.26041 0.94840 1.00895 0.93539 0.86371 0.80619 0.81176 0.78940 1.19606 1.20268 1.18567 1.19578 0.94567 0.89541 1.43066 0.89898 1.18196 0.86841 0.91787 0.86611 1.21540 0.98428 0.93846 1.20097 1.20606 0.93510 0.96312 0.95266 1.20634 0.94500 0.95956 1.28005 1.18457 0.84029 0.90281 0.89778 1.44075 1.02823 1.07175 1.82819 1.20538 0.89939 0.88792 0.94384 0.89624 1.22154 1.00798 0.96972 0.97831 1.21606 0.94722 0.99066 1.00074 1.22275 0.98229 1.00937 0.85174 1.58872 1.14505 1.34386 1.12179 1.19004 0.88771 0.93521 0.96652 1.21418 0.98192 0.97330 1.02328 1.21023 0.93590 0.98512 0.98043 1.21044 1.00102 0.94289 1.01768 1.20982 0.96244 0.97750 0.96623 1.20777 0.94472 0.97989 1.03164 1.22487 0.93922 0.89446 1.02183 1.68194 1.07912 1.24201 1.25025 0.92016 0.88750 0.88978 0.88994 0.77189 0.90625 0.92141 0.90801 0.91019 0.90136 0.93855 0.85355 0.86129 0.86406 0.86109 0.85841 0.93312 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.02 11.48 55.55 0.64 -18.38 16 2 C 0.07 1.84 5.49 -17.34 -0.10 1.75 16 3 Si 0.90 18.81 29.56 -169.99 -5.03 13.79 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.44 -11.85 9.13 -37.74 -0.34 -12.19 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.29 8.17 6.54 -85.00 -0.56 7.62 16 10 C -0.32 -8.04 9.83 -38.65 -0.38 -8.42 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.37 -8.35 8.88 -38.87 -0.35 -8.69 16 13 C 0.41 9.98 7.63 -155.31 -1.18 8.79 16 14 N -0.73 -14.36 5.24 -53.84 -0.28 -14.64 16 15 C 0.17 2.66 2.29 -67.86 -0.16 2.51 16 16 H 0.09 1.46 6.43 -51.93 -0.33 1.12 16 17 C -0.14 -1.94 5.51 -26.62 -0.15 -2.09 16 18 C -0.12 -1.28 6.09 -26.65 -0.16 -1.44 16 19 C 0.06 0.63 5.26 -3.83 -0.02 0.61 16 20 N -0.48 -5.94 4.70 -171.15 -0.80 -6.74 16 21 C 0.12 1.42 5.64 -83.78 -0.47 0.94 16 22 C -0.17 -2.01 8.82 -39.38 -0.35 -2.35 16 23 C -0.09 -0.95 10.04 -39.61 -0.40 -1.35 16 24 C -0.15 -1.44 10.04 -39.55 -0.40 -1.83 16 25 C -0.10 -0.91 10.04 -39.62 -0.40 -1.30 16 26 C -0.14 -1.50 9.16 -39.38 -0.36 -1.86 16 27 C 0.05 0.63 3.62 -3.83 -0.01 0.61 16 28 N -0.53 -14.64 7.91 -10.33 -0.08 -14.72 16 29 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 30 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.89 6.03 -52.49 -0.32 1.57 16 33 H 0.39 7.72 8.73 -40.82 -0.36 7.36 16 34 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.73 6.70 -51.93 -0.35 0.38 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.13 1.48 5.81 -52.49 -0.30 1.17 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.13 7.15 -52.49 -0.38 0.75 16 45 H 0.05 0.63 7.75 -51.92 -0.40 0.23 16 46 H 0.09 1.22 6.97 -51.93 -0.36 0.86 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -29.74 366.62 -12.76 -42.49 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.55 Total: 12.55 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -6.18 Total: -19.86 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.53 Total: -54.49 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.74 -12.76 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.729 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds