Wall clock time and date at job start Sat Apr 11 2020 01:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48503 * 109.47237 * 274.98530 * 3 2 1 5 5 H 1.48496 * 109.47281 * 34.98720 * 3 2 1 6 6 H 1.48503 * 109.47229 * 154.98542 * 3 2 1 7 7 C 1.40025 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99908 * 186.34833 * 7 2 1 9 9 C 1.41320 * 119.99790 * 6.34504 * 7 2 1 10 10 C 1.40592 * 119.78046 * 173.77632 * 9 7 2 11 11 C 1.38351 * 119.14659 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.67952 * 0.02562 * 11 10 9 13 13 C 1.39749 * 119.49067 * 359.97438 * 12 11 10 14 14 N 1.38832 * 119.58485 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99639 * 359.97438 * 14 13 12 16 16 H 1.09003 * 109.53340 * 34.90932 * 15 14 13 17 17 C 1.53097 * 109.49281 * 274.81136 * 15 14 13 18 18 C 1.53115 * 109.15401 * 182.39935 * 17 15 14 19 19 C 1.53042 * 109.28077 * 57.65653 * 18 17 15 20 20 N 1.46841 * 109.51877 * 300.82033 * 19 18 17 21 21 C 1.39678 * 110.99795 * 185.83963 * 20 19 18 22 22 C 1.38915 * 120.07424 * 235.50856 * 21 20 19 23 23 C 1.38107 * 119.92145 * 179.76355 * 22 21 20 24 24 C 1.38281 * 120.07395 * 0.51802 * 23 22 21 25 25 C 1.38275 * 120.15509 * 359.73662 * 24 23 22 26 26 C 1.38108 * 120.07374 * 0.02562 * 25 24 23 27 27 C 1.46846 * 111.20454 * 61.73940 * 20 19 18 28 28 N 1.31978 * 120.83465 * 0.25642 * 13 12 11 29 29 H 0.97006 * 120.00262 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.42709 * 359.97438 * 10 9 7 31 31 H 1.07995 * 120.65913 * 179.97438 * 11 10 9 32 32 H 1.07999 * 120.25114 * 180.02562 * 12 11 10 33 33 H 0.97000 * 120.00111 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.52395 * 62.49735 * 17 15 14 35 35 H 1.08996 * 109.57387 * 302.33244 * 17 15 14 36 36 H 1.09003 * 109.50897 * 297.71230 * 18 17 15 37 37 H 1.09005 * 109.53164 * 177.61499 * 18 17 15 38 38 H 1.09002 * 109.46344 * 180.80079 * 19 18 17 39 39 H 1.08993 * 109.46043 * 60.83395 * 19 18 17 40 40 H 1.07998 * 120.03757 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.95724 * 180.25789 * 23 22 21 42 42 H 1.08009 * 119.92179 * 179.76510 * 24 23 22 43 43 H 1.08000 * 119.96683 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.03815 * 180.02562 * 26 25 24 45 45 H 1.09008 * 109.45945 * 58.27097 * 27 20 19 46 46 H 1.08997 * 109.46493 * 178.25080 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 0.1029 9 6 1.3074 -2.4327 -0.1363 10 6 2.0214 -3.6366 -0.2682 11 6 1.3227 -4.8233 -0.4008 12 6 -0.0631 -4.7832 -0.3996 13 6 -0.7157 -3.5548 -0.2650 14 7 -2.1034 -3.5123 -0.2641 15 6 -2.8741 -4.7502 -0.4043 16 1 -2.3511 -5.5641 0.0979 17 6 -3.0360 -5.0858 -1.8892 18 6 -3.8929 -6.3471 -2.0287 19 6 -5.2458 -6.1163 -1.3516 20 7 -5.0368 -5.7993 0.0668 21 6 -6.2549 -5.7120 0.7449 22 6 -6.5775 -4.5601 1.4512 23 6 -7.7848 -4.4753 2.1164 24 6 -8.6673 -5.5395 2.0890 25 6 -8.3471 -6.6896 1.3913 26 6 -7.1437 -6.7793 0.7198 27 6 -4.2564 -4.5656 0.2260 28 7 -0.0295 -2.4339 -0.1442 29 1 -0.4851 0.8401 0.0004 30 1 3.1014 -3.6350 -0.2667 31 1 1.8464 -5.7621 -0.5041 32 1 -0.6339 -5.6944 -0.5012 33 1 -2.5625 -2.6629 -0.1714 34 1 -2.0556 -5.2607 -2.3321 35 1 -3.5238 -4.2557 -2.4001 36 1 -3.3859 -7.1861 -1.5522 37 1 -4.0475 -6.5677 -3.0850 38 1 -5.8530 -7.0175 -1.4368 39 1 -5.7582 -5.2861 -1.8377 40 1 -5.8868 -3.7302 1.4764 41 1 -8.0380 -3.5784 2.6622 42 1 -9.6092 -5.4720 2.6133 43 1 -9.0385 -7.5191 1.3722 44 1 -6.8943 -7.6777 0.1747 45 1 -4.7735 -3.7425 -0.2675 46 1 -4.1449 -4.3406 1.2866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:06:29 Heat of formation + Delta-G solvation = 59.812557 kcal Electronic energy + Delta-G solvation = -26482.697181 eV Core-core repulsion = 22950.205269 eV Total energy + Delta-G solvation = -3532.491912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46765 -40.16329 -38.89773 -36.57178 -35.19635 -34.03022 -32.48924 -32.09054 -31.33204 -30.01478 -29.24021 -27.31270 -25.64923 -24.68944 -23.40627 -22.79037 -22.46631 -21.79227 -20.82402 -19.30768 -18.59458 -18.08951 -16.91524 -16.62856 -16.50525 -16.28718 -15.96825 -15.87601 -15.46628 -15.24921 -15.10184 -14.74339 -14.56899 -14.40074 -14.32931 -14.01222 -13.69220 -13.59629 -13.29619 -12.94665 -12.76097 -12.61883 -12.48883 -12.37156 -12.17869 -12.07863 -11.88952 -11.75387 -11.72363 -11.56307 -11.22900 -10.68333 -10.61798 -9.84806 -9.84010 -9.44723 -8.80084 -8.31683 -8.24264 -6.47401 0.46542 0.49916 1.05696 1.34503 1.40891 1.54804 1.57502 2.24521 2.28221 2.81026 2.91605 3.06701 3.66704 3.74115 3.93102 3.98075 4.06038 4.08703 4.15993 4.20613 4.31580 4.39446 4.44319 4.48241 4.57102 4.61895 4.65249 4.70874 4.78094 4.86726 4.89822 4.97557 5.00884 5.04051 5.11907 5.15673 5.20983 5.33287 5.34814 5.40433 5.53349 5.67051 5.71987 5.87146 5.95681 5.98910 6.08895 6.22491 6.33924 6.55265 6.82815 6.92881 7.21156 8.33795 8.50769 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002827 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.738321 B = 9903.843104 C =11008.240831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.031 4.031 12 C -0.363 4.363 13 C 0.400 3.600 14 N -0.728 5.728 15 C 0.172 3.828 16 H 0.074 0.926 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.059 3.941 20 N -0.489 5.489 21 C 0.098 3.902 22 C -0.192 4.192 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.097 4.097 26 C -0.149 4.149 27 C 0.061 3.939 28 N -0.566 5.566 29 H 0.275 0.725 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.391 0.609 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.049 0.951 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 -10.597 -0.744 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.366 4.366 11 C -0.055 4.055 12 C -0.388 4.388 13 C 0.160 3.840 14 N -0.362 5.362 15 C 0.066 3.934 16 H 0.092 0.908 17 C -0.171 4.171 18 C -0.145 4.145 19 C -0.066 4.066 20 N -0.204 5.204 21 C 0.001 3.999 22 C -0.213 4.213 23 C -0.122 4.122 24 C -0.173 4.173 25 C -0.116 4.116 26 C -0.169 4.169 27 C -0.067 4.067 28 N -0.288 5.288 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.225 0.775 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.067 0.933 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.885 -10.285 -0.527 20.638 hybrid contribution 0.664 1.050 -0.210 1.260 sum -17.221 -9.235 -0.737 19.555 Atomic orbital electron populations 1.70250 1.08747 1.28621 1.29762 1.26949 0.95737 1.04322 0.92532 0.85156 0.79149 0.75984 0.79123 1.19020 1.19282 1.17965 1.19922 0.94992 0.90652 1.44831 0.89617 1.18676 0.87616 0.93124 0.87394 1.21693 0.98989 0.94156 1.21771 1.21012 0.93788 0.97075 0.93626 1.20939 0.94804 0.96424 1.26657 1.18863 0.85622 0.90231 0.89299 1.44232 1.01562 1.08573 1.81847 1.20691 0.90411 0.86547 0.95758 0.90803 1.22053 1.00434 0.98617 0.95995 1.21569 0.94238 0.97061 1.01650 1.22357 0.98144 1.01886 0.84171 1.58925 1.14963 1.33257 1.13247 1.19163 0.89068 0.94331 0.97342 1.21497 0.98961 0.97441 1.03427 1.21271 0.93285 0.99600 0.98000 1.21397 1.00710 0.93845 1.01328 1.21353 0.96162 0.98482 0.95554 1.21006 0.94562 0.97918 1.03389 1.22226 0.92835 0.90468 1.01171 1.68168 1.08214 1.25955 1.26484 0.91399 0.87994 0.85386 0.86548 0.77518 0.92611 0.92494 0.90677 0.88762 0.87887 0.93975 0.86324 0.84843 0.84020 0.83346 0.84447 0.93252 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.18 11.48 21.84 0.25 -40.93 16 2 C 0.03 1.38 5.49 85.29 0.47 1.85 16 3 Si 0.99 39.23 29.56 68.60 2.03 41.25 16 4 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.47 -26.63 9.13 23.46 0.21 -26.41 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.53 16 9 C 0.26 15.03 6.54 40.19 0.26 15.29 16 10 C -0.34 -17.85 9.83 22.87 0.22 -17.63 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.36 -16.57 8.88 22.73 0.20 -16.37 16 13 C 0.40 19.80 7.63 133.40 1.02 20.82 16 14 N -0.73 -29.37 5.24 -324.26 -1.70 -31.07 16 15 C 0.17 5.39 2.29 45.04 0.10 5.49 16 16 H 0.07 2.50 6.43 -2.39 -0.02 2.49 16 17 C -0.13 -3.63 5.51 30.67 0.17 -3.46 16 18 C -0.11 -2.14 6.09 30.65 0.19 -1.95 16 19 C 0.06 1.13 5.26 86.33 0.45 1.59 16 20 N -0.49 -11.48 4.70 -695.39 -3.27 -14.74 16 21 C 0.10 2.24 5.64 38.21 0.22 2.46 16 22 C -0.19 -4.44 8.82 22.40 0.20 -4.25 16 23 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16 24 C -0.15 -2.51 10.04 22.29 0.22 -2.28 16 25 C -0.10 -1.52 10.04 22.25 0.22 -1.30 16 26 C -0.15 -2.76 9.16 22.40 0.21 -2.56 16 27 C 0.06 1.64 3.62 86.33 0.31 1.95 16 28 N -0.57 -32.34 7.91 -186.59 -1.48 -33.82 16 29 H 0.28 13.63 8.29 -92.70 -0.77 12.86 16 30 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 31 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.12 4.66 6.03 -2.91 -0.02 4.64 16 33 H 0.39 16.03 8.73 -92.71 -0.81 15.22 16 34 H 0.06 1.76 7.66 -2.39 -0.02 1.74 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.10 1.55 6.70 -2.39 -0.02 1.53 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.12 2.85 5.81 -2.91 -0.02 2.83 16 41 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.14 2.09 7.15 -2.91 -0.02 2.07 16 45 H 0.05 1.31 7.75 -2.38 -0.02 1.29 16 46 H 0.08 2.22 6.97 -2.39 -0.02 2.20 16 Total: -1.00 -66.65 366.62 1.15 -65.50 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: 0.19 Total: 43.53 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 5.13 Total: -29.72 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.19 Total: -120.56 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Total: -66.65 1.15 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.315 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds