Wall clock time and date at job start Sat Apr 11 2020 01:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00541 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99489 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99511 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46708 * 180.02562 * 16 15 13 18 18 N 1.30838 * 125.96089 * 274.99696 * 17 16 15 19 19 C 1.33244 * 109.82827 * 179.97438 * 18 17 16 20 20 C 1.50704 * 125.52570 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.82048 * 15.56720 * 20 19 18 22 22 C 1.54380 * 109.83039 * 254.59351 * 20 19 18 23 23 C 1.55301 * 102.25123 * 219.12974 * 22 20 19 24 24 C 1.54941 * 100.94216 * 34.13252 * 23 22 20 25 25 O 1.43231 * 109.82947 * 136.45779 * 20 19 18 26 26 N 1.30713 * 108.94798 * 0.02562 * 19 18 17 27 27 N 1.34430 * 125.96328 * 94.69346 * 17 16 15 28 28 H 0.96996 * 126.82144 * 359.97438 * 27 17 16 29 29 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 31 31 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 32 32 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 33 33 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 34 34 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 36 36 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 37 37 H 0.97003 * 120.00377 * 0.02562 * 15 13 12 38 38 H 1.08994 * 109.47121 * 299.99693 * 16 15 13 39 39 H 1.08994 * 109.47503 * 60.00345 * 16 15 13 40 40 H 1.09007 * 110.84559 * 337.31795 * 22 20 19 41 41 H 1.08999 * 110.85018 * 100.93431 * 22 20 19 42 42 H 1.09001 * 111.12762 * 276.21431 * 23 22 20 43 43 H 1.08999 * 111.16212 * 152.06530 * 23 22 20 44 44 H 1.09009 * 110.30929 * 204.64180 * 24 23 22 45 45 H 1.09004 * 110.31407 * 82.47272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9832 -7.3712 0.0015 14 8 0.7878 -7.5935 0.0024 15 7 2.8591 -8.3956 0.0014 16 6 2.3707 -9.7769 0.0019 17 6 3.5428 -10.7240 0.0024 18 7 4.1985 -11.1356 -1.0524 19 6 5.1741 -11.9646 -0.6831 20 6 6.1452 -12.6439 -1.6140 21 1 6.1214 -12.1600 -2.5904 22 6 5.7762 -14.1360 -1.7579 23 6 7.1705 -14.8198 -1.7783 24 6 7.9632 -13.9001 -0.8158 25 8 7.4684 -12.5757 -1.0700 26 7 5.1523 -12.0930 0.6175 27 7 4.1008 -11.2891 1.0871 28 1 3.8299 -11.1670 2.0104 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8720 -3.6042 -0.8894 34 1 0.8534 -5.0451 -0.8886 35 1 0.8541 -5.0445 0.8914 36 1 3.3861 -5.9233 0.0002 37 1 3.8128 -8.2184 0.0011 38 1 1.7654 -9.9479 0.8921 39 1 1.7649 -9.9484 -0.8878 40 1 5.1904 -14.4749 -0.9033 41 1 5.2424 -14.3155 -2.6911 42 1 7.6009 -14.8047 -2.7796 43 1 7.1152 -15.8377 -1.3924 44 1 9.0299 -13.9538 -1.0340 45 1 7.7734 -14.1826 0.2197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329034390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:07:00 Heat of formation + Delta-G solvation = -2.135431 kcal Electronic energy + Delta-G solvation = -25626.284662 eV Core-core repulsion = 21680.257220 eV Total energy + Delta-G solvation = -3946.027442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.73186 -39.95215 -39.73416 -35.88404 -34.95512 -33.45592 -33.29692 -32.60770 -32.09261 -31.07292 -29.58374 -27.63733 -26.13542 -24.28401 -23.06910 -22.28500 -21.65566 -20.96699 -20.71845 -20.44490 -18.81000 -18.07060 -17.09235 -16.68737 -16.63126 -16.26037 -15.82743 -15.63212 -15.38919 -14.78578 -14.48791 -14.38954 -14.13069 -14.00854 -13.79910 -13.54720 -13.27209 -12.47806 -12.34118 -12.28347 -12.25753 -11.81810 -11.81003 -11.71321 -11.45693 -10.90424 -10.73907 -10.63983 -10.59776 -10.55933 -10.40555 -10.19926 -9.96041 -9.86597 -9.45203 -9.43091 -9.12675 -8.69886 -8.36889 -6.01657 -4.04715 0.94662 2.03577 2.14498 2.85080 3.14487 3.24607 3.31167 3.37594 3.40352 3.56633 3.85940 4.05672 4.22116 4.29624 4.31986 4.45229 4.54524 4.67341 4.80328 5.08501 5.16520 5.19202 5.23233 5.28843 5.34199 5.37603 5.58669 5.67011 5.68204 5.79791 5.84854 6.09327 6.18325 6.41389 6.47479 6.50473 6.61098 6.71879 6.96046 7.00973 7.56572 7.63811 7.76429 7.97142 8.00985 8.38018 8.61395 9.01925 9.59500 11.09568 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.001612 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.025336 B =17369.531082 C =18113.473911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.135 3.865 12 N -0.738 5.738 13 C 0.706 3.294 14 O -0.589 6.589 15 N -0.749 5.749 16 C 0.222 3.778 17 C 0.272 3.728 18 N -0.513 5.513 19 C 0.213 3.787 20 C 0.176 3.824 21 H 0.114 0.886 22 C -0.143 4.143 23 C -0.155 4.155 24 C 0.049 3.951 25 O -0.365 6.365 26 N -0.287 5.287 27 N -0.470 5.470 28 H 0.444 0.556 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.399 0.601 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.348 -32.261 -0.822 34.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.012 3.988 12 N -0.392 5.392 13 C 0.405 3.595 14 O -0.467 6.467 15 N -0.408 5.408 16 C 0.095 3.905 17 C -0.008 4.008 18 N -0.243 5.243 19 C -0.070 4.070 20 C 0.115 3.885 21 H 0.132 0.868 22 C -0.182 4.182 23 C -0.192 4.192 24 C -0.027 4.027 25 O -0.282 6.282 26 N -0.117 5.117 27 N -0.189 5.189 28 H 0.290 0.710 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.228 0.772 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.628 -32.505 -0.760 34.880 hybrid contribution 0.898 1.136 0.720 1.617 sum 13.527 -31.368 -0.040 34.161 Atomic orbital electron populations 1.69965 1.06041 1.26678 1.50542 1.25026 0.94856 0.99283 0.95271 0.86582 0.79783 0.83444 0.78099 1.20657 1.21213 1.19931 1.21206 0.93000 0.90956 1.50963 0.92656 1.19029 0.93852 0.90785 0.97726 1.21899 0.99823 0.93289 1.00902 1.21557 0.91232 0.84008 1.02039 1.45380 1.10672 1.04251 1.78868 1.15863 0.84990 0.80660 0.77966 1.90944 1.13868 1.84017 1.57833 1.44951 1.09519 1.04081 1.82203 1.19411 0.88573 0.77054 1.05443 1.24280 0.96777 0.96676 0.83029 1.70353 1.09017 1.15429 1.29474 1.24564 0.95819 0.96111 0.90518 1.20871 0.79756 0.94862 0.93023 0.86802 1.23157 0.98346 0.92478 1.04173 1.23294 0.94722 1.00128 1.01081 1.23466 0.98878 0.81589 0.98815 1.88522 1.27790 1.27734 1.84159 1.78044 1.05865 1.15369 1.12401 1.48139 1.24613 1.35546 1.10607 0.70952 0.92933 0.96191 0.96217 0.92766 0.92681 0.91745 0.91812 0.77151 0.76720 0.88978 0.87495 0.90130 0.88886 0.89806 0.89468 0.89162 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.74 -0.14 -2.47 16 11 C 0.13 2.32 5.67 -4.04 -0.02 2.30 16 12 N -0.74 -10.24 5.56 -65.22 -0.36 -10.60 16 13 C 0.71 10.01 8.57 -86.92 -0.74 9.26 16 14 O -0.59 -10.68 16.34 5.29 0.09 -10.60 16 15 N -0.75 -7.50 5.55 -66.42 -0.37 -7.87 16 16 C 0.22 1.91 6.30 -5.19 -0.03 1.88 16 17 C 0.27 2.42 7.61 -155.69 -1.18 1.23 16 18 N -0.51 -5.55 11.19 -8.16 -0.09 -5.65 16 19 C 0.21 2.23 6.90 -156.85 -1.08 1.14 16 20 C 0.18 1.47 4.09 -27.16 -0.11 1.35 16 21 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 22 C -0.14 -0.81 6.53 -24.79 -0.16 -0.97 16 23 C -0.15 -0.64 7.16 -24.49 -0.18 -0.82 16 24 C 0.05 0.29 7.78 38.18 0.30 0.59 16 25 O -0.36 -3.44 10.99 -35.23 -0.39 -3.83 16 26 N -0.29 -2.99 12.79 32.42 0.41 -2.57 16 27 N -0.47 -3.73 7.45 32.62 0.24 -3.49 16 28 H 0.44 2.15 8.96 -182.34 -1.63 0.52 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 4.41 8.49 -40.82 -0.35 4.07 16 37 H 0.40 3.36 8.48 -40.82 -0.35 3.02 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.52 7.84 -51.92 -0.41 0.11 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -35.78 383.23 -11.08 -46.86 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.19 Total: 0.87 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.91 Total: 0.62 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.57 Total: -56.14 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.30 Total: -14.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.78 -11.08 -46.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329034390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.726 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds