Wall clock time and date at job start Sat Apr 11 2020 01:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00541 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99489 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99511 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46708 * 180.02562 * 16 15 13 18 18 N 1.30838 * 125.96089 * 274.99696 * 17 16 15 19 19 C 1.33244 * 109.82827 * 179.97438 * 18 17 16 20 20 C 1.50704 * 125.52570 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.82048 * 15.56720 * 20 19 18 22 22 C 1.54380 * 109.83039 * 254.59351 * 20 19 18 23 23 C 1.55301 * 102.25123 * 219.12974 * 22 20 19 24 24 C 1.54941 * 100.94216 * 34.13252 * 23 22 20 25 25 O 1.43231 * 109.82947 * 136.45779 * 20 19 18 26 26 N 1.30713 * 108.94798 * 0.02562 * 19 18 17 27 27 N 1.34430 * 125.96328 * 94.69346 * 17 16 15 28 28 H 0.96996 * 126.82144 * 359.97438 * 27 17 16 29 29 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 31 31 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 32 32 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 33 33 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 34 34 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 36 36 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 37 37 H 0.97003 * 120.00377 * 0.02562 * 15 13 12 38 38 H 1.08994 * 109.47121 * 299.99693 * 16 15 13 39 39 H 1.08994 * 109.47503 * 60.00345 * 16 15 13 40 40 H 1.09007 * 110.84559 * 337.31795 * 22 20 19 41 41 H 1.08999 * 110.85018 * 100.93431 * 22 20 19 42 42 H 1.09001 * 111.12762 * 276.21431 * 23 22 20 43 43 H 1.08999 * 111.16212 * 152.06530 * 23 22 20 44 44 H 1.09009 * 110.30929 * 204.64180 * 24 23 22 45 45 H 1.09004 * 110.31407 * 82.47272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9832 -7.3712 0.0015 14 8 0.7878 -7.5935 0.0024 15 7 2.8591 -8.3956 0.0014 16 6 2.3707 -9.7769 0.0019 17 6 3.5428 -10.7240 0.0024 18 7 4.1985 -11.1356 -1.0524 19 6 5.1741 -11.9646 -0.6831 20 6 6.1452 -12.6439 -1.6140 21 1 6.1214 -12.1600 -2.5904 22 6 5.7762 -14.1360 -1.7579 23 6 7.1705 -14.8198 -1.7783 24 6 7.9632 -13.9001 -0.8158 25 8 7.4684 -12.5757 -1.0700 26 7 5.1523 -12.0930 0.6175 27 7 4.1008 -11.2891 1.0871 28 1 3.8299 -11.1670 2.0104 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8720 -3.6042 -0.8894 34 1 0.8534 -5.0451 -0.8886 35 1 0.8541 -5.0445 0.8914 36 1 3.3861 -5.9233 0.0002 37 1 3.8128 -8.2184 0.0011 38 1 1.7654 -9.9479 0.8921 39 1 1.7649 -9.9484 -0.8878 40 1 5.1904 -14.4749 -0.9033 41 1 5.2424 -14.3155 -2.6911 42 1 7.6009 -14.8047 -2.7796 43 1 7.1152 -15.8377 -1.3924 44 1 9.0299 -13.9538 -1.0340 45 1 7.7734 -14.1826 0.2197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329034390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:07:00 Heat of formation + Delta-G solvation = -29.394986 kcal Electronic energy + Delta-G solvation = -25627.466725 eV Core-core repulsion = 21680.257220 eV Total energy + Delta-G solvation = -3947.209505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.45233 -41.04878 -40.31783 -37.19013 -36.11196 -35.18032 -34.12178 -33.24699 -33.08596 -32.47841 -30.20197 -28.91802 -27.53025 -24.91671 -24.76983 -22.70003 -22.39630 -22.28760 -21.93733 -21.37995 -19.70924 -19.00641 -18.52085 -17.72831 -17.32548 -17.19001 -16.93260 -16.62190 -16.44070 -16.02907 -15.85514 -15.62292 -15.29126 -14.68542 -14.55976 -14.27750 -14.22877 -14.04198 -13.71716 -13.46607 -13.15734 -12.82393 -12.77041 -12.73072 -12.52886 -12.35141 -12.19582 -11.85005 -11.69986 -11.64581 -11.37526 -11.32477 -11.29059 -11.16784 -10.92570 -10.63001 -10.53426 -10.48678 -9.85763 -8.17898 -6.29038 0.21326 1.28416 1.42858 1.43850 1.46079 1.54742 1.90328 2.09566 2.43150 2.50947 3.00482 3.15942 3.28346 3.30368 3.48677 3.63048 3.88834 4.08510 4.17960 4.19622 4.27122 4.33710 4.47607 4.50652 4.59669 4.78688 4.80806 4.89834 4.98113 4.99423 4.99926 5.01142 5.11529 5.19215 5.21314 5.22438 5.47226 5.55609 5.74275 5.85245 5.87012 5.89713 5.96304 6.24815 6.84860 6.88132 6.99437 7.40378 7.50021 8.94024 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.001612 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.025336 B =17369.531082 C =18113.473911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.150 3.850 12 N -0.729 5.729 13 C 0.707 3.293 14 O -0.629 6.629 15 N -0.730 5.730 16 C 0.226 3.774 17 C 0.278 3.722 18 N -0.536 5.536 19 C 0.204 3.796 20 C 0.169 3.831 21 H 0.116 0.884 22 C -0.138 4.138 23 C -0.144 4.144 24 C 0.040 3.960 25 O -0.390 6.390 26 N -0.306 5.306 27 N -0.457 5.457 28 H 0.457 0.543 29 H 0.263 0.737 30 H -0.007 1.007 31 H -0.006 1.006 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.410 0.590 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.336 -33.110 -0.842 36.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.025 3.975 12 N -0.384 5.384 13 C 0.407 3.593 14 O -0.510 6.510 15 N -0.389 5.389 16 C 0.099 3.901 17 C -0.001 4.001 18 N -0.267 5.267 19 C -0.079 4.079 20 C 0.108 3.892 21 H 0.134 0.866 22 C -0.177 4.177 23 C -0.181 4.181 24 C -0.035 4.035 25 O -0.308 6.308 26 N -0.136 5.136 27 N -0.178 5.178 28 H 0.306 0.694 29 H 0.072 0.928 30 H 0.012 0.988 31 H 0.013 0.987 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.248 0.752 37 H 0.246 0.754 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.684 -33.392 -0.759 36.486 hybrid contribution 0.278 1.344 0.747 1.563 sum 14.962 -32.048 -0.012 35.368 Atomic orbital electron populations 1.70108 1.07861 1.27730 1.51681 1.25996 0.95737 1.03438 0.94825 0.85434 0.78669 0.78439 0.78403 1.19903 1.21033 1.18556 1.21693 0.93733 0.92109 1.50443 0.91647 1.18947 0.94471 0.92834 0.95238 1.21596 0.98474 0.91879 1.02054 1.21106 0.91230 0.84304 1.00825 1.45030 1.10967 1.03538 1.78869 1.15898 0.84731 0.81073 0.77622 1.90926 1.15834 1.84615 1.59643 1.44726 1.09552 1.03831 1.80756 1.19483 0.88457 0.75943 1.06213 1.24169 0.96477 0.96467 0.83006 1.70339 1.09678 1.16151 1.30514 1.24982 0.96028 0.96061 0.90825 1.21071 0.79253 0.96346 0.92525 0.86617 1.23146 0.99265 0.90820 1.04435 1.23288 0.93211 1.00307 1.01333 1.23657 0.99914 0.80863 0.99098 1.88486 1.28276 1.29764 1.84323 1.77999 1.06759 1.16210 1.12654 1.48069 1.23805 1.34729 1.11199 0.69352 0.92848 0.98825 0.98727 0.91420 0.91516 0.93231 0.93014 0.75250 0.75428 0.87098 0.87967 0.91104 0.87453 0.88566 0.87807 0.87792 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.18 4.97 29.84 0.15 1.32 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.15 5.13 5.67 86.38 0.49 5.62 16 12 N -0.73 -19.17 5.56 -478.53 -2.66 -21.83 16 13 C 0.71 19.19 8.57 179.05 1.53 20.72 16 14 O -0.63 -22.54 16.34 -3.98 -0.07 -22.61 16 15 N -0.73 -13.38 5.55 -482.30 -2.68 -16.05 16 16 C 0.23 3.54 6.30 85.63 0.54 4.08 16 17 C 0.28 4.59 7.61 138.22 1.05 5.64 16 18 N -0.54 -11.18 11.19 -179.71 -2.01 -13.19 16 19 C 0.20 4.15 6.90 138.63 0.96 5.11 16 20 C 0.17 2.72 4.09 30.32 0.12 2.84 16 21 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 22 C -0.14 -1.40 6.53 31.85 0.21 -1.19 16 23 C -0.14 -0.93 7.16 32.05 0.23 -0.71 16 24 C 0.04 0.45 7.78 72.65 0.56 1.01 16 25 O -0.39 -7.20 10.99 -148.98 -1.64 -8.84 16 26 N -0.31 -6.14 12.79 -51.33 -0.66 -6.80 16 27 N -0.46 -6.67 7.45 -50.70 -0.38 -7.05 16 28 H 0.46 3.69 8.96 -213.10 -1.91 1.78 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 8.21 8.49 -92.71 -0.79 7.43 16 37 H 0.41 6.01 8.48 -92.71 -0.79 5.23 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 0.86 7.84 -2.38 -0.02 0.84 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -77.72 383.23 -3.52 -81.24 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -2.45 Total: 14.62 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.70 Total: 11.23 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -8.10 Total: -121.40 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.70 Total: -31.45 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -77.72 -3.52 -81.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329034390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.843 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds