Wall clock time and date at job start Sat Apr 11 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86802 * 120.00283 * 2 1 4 4 H 1.48497 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46879 * 299.99868 * 3 2 1 6 6 H 1.48500 * 109.47105 * 59.99622 * 3 2 1 7 7 C 1.40029 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.41318 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78536 * 179.97438 * 9 7 2 11 11 C 1.38346 * 119.15158 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.67636 * 359.75560 * 11 10 9 13 13 C 1.39754 * 119.49286 * 0.49219 * 12 11 10 14 14 N 1.38827 * 119.58561 * 179.76597 * 13 12 11 15 15 C 1.46505 * 119.99959 * 359.72971 * 14 13 12 16 16 C 1.50695 * 109.47302 * 179.97438 * 15 14 13 17 17 C 1.38287 * 119.92782 * 269.72893 * 16 15 14 18 18 C 1.38107 * 120.07063 * 179.72456 * 17 16 15 19 19 C 1.38908 * 119.92699 * 0.54446 * 18 17 16 20 20 N 1.39672 * 120.07330 * 179.70335 * 19 18 17 21 21 C 1.48537 * 110.99871 * 116.84398 * 20 19 18 22 22 C 1.54938 * 103.22778 * 159.72362 * 21 20 19 23 23 C 1.54598 * 102.91881 * 322.58169 * 22 21 20 24 24 C 1.47902 * 111.00288 * 234.23636 * 20 19 18 25 25 C 1.38914 * 119.85356 * 359.73010 * 19 18 17 26 26 C 1.38102 * 119.92055 * 359.97438 * 25 19 18 27 27 N 1.31983 * 120.83266 * 359.49274 * 13 12 11 28 28 H 0.97003 * 119.99649 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.42487 * 0.02562 * 10 9 7 30 30 H 1.07996 * 120.66092 * 180.02562 * 11 10 9 31 31 H 1.07998 * 120.25303 * 180.26099 * 12 11 10 32 32 H 0.97001 * 120.00287 * 179.72074 * 14 13 12 33 33 H 1.08997 * 109.46959 * 299.99594 * 15 14 13 34 34 H 1.09000 * 109.46991 * 59.99566 * 15 14 13 35 35 H 1.07998 * 119.96319 * 359.97438 * 17 16 15 36 36 H 1.08007 * 120.03391 * 180.27179 * 18 17 16 37 37 H 1.08999 * 110.66335 * 278.15200 * 21 20 19 38 38 H 1.08990 * 110.66897 * 41.28564 * 21 20 19 39 39 H 1.09001 * 110.72005 * 204.23072 * 22 21 20 40 40 H 1.09000 * 110.72789 * 80.93769 * 22 21 20 41 41 H 1.08997 * 110.31207 * 263.04025 * 23 22 21 42 42 H 1.09001 * 110.30925 * 140.87810 * 23 22 21 43 43 H 1.09005 * 109.91647 * 333.51646 * 24 20 19 44 44 H 1.09000 * 109.91777 * 94.60592 * 24 20 19 45 45 H 1.07997 * 120.04120 * 180.02562 * 25 19 18 46 46 H 1.08004 * 119.96197 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0016 10 6 2.0083 -3.6514 0.0016 11 6 1.3033 -4.8418 0.0022 12 6 -0.0822 -4.7944 0.0079 13 6 -0.7283 -3.5551 0.0025 14 7 -2.1157 -3.5054 0.0033 15 6 -2.8931 -4.7471 0.0037 16 6 -4.3639 -4.4190 0.0052 17 6 -5.0374 -4.2745 1.2043 18 6 -6.3840 -3.9681 1.2091 19 6 -7.0645 -3.8163 0.0077 20 7 -8.4278 -3.5126 0.0090 21 6 -8.6788 -2.1889 -0.6165 22 6 -10.1779 -2.2575 -1.0021 23 6 -10.3505 -3.7245 -1.4585 24 6 -9.1895 -4.4905 -0.7978 25 6 -6.3862 -3.9677 -1.1951 26 6 -5.0382 -4.2680 -1.1927 27 7 -0.0361 -2.4314 0.0020 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6555 0.0012 30 1 1.8220 -5.7891 0.0026 31 1 -0.6579 -5.7081 0.0127 32 1 -2.5703 -2.6486 0.0036 33 1 -2.6510 -5.3277 -0.8864 34 1 -2.6499 -5.3278 0.8936 35 1 -4.5088 -4.3974 2.1380 36 1 -6.9085 -3.8511 2.1460 37 1 -8.5021 -1.3857 0.0990 38 1 -8.0590 -2.0587 -1.5035 39 1 -10.3976 -1.5709 -1.8196 40 1 -10.8084 -2.0455 -0.1386 41 1 -10.2803 -3.7938 -2.5440 42 1 -11.3073 -4.1175 -1.1147 43 1 -8.5453 -4.9217 -1.5641 44 1 -9.5797 -5.2791 -0.1542 45 1 -6.9122 -3.8499 -2.1310 46 1 -4.5101 -4.3855 -2.1275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338233753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:07:40 Heat of formation + Delta-G solvation = 74.156936 kcal Electronic energy + Delta-G solvation = -25674.655388 eV Core-core repulsion = 22142.785495 eV Total energy + Delta-G solvation = -3531.869893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.41248 -38.50094 -37.88498 -35.11340 -33.41296 -32.53428 -31.00689 -30.45916 -29.73754 -29.19342 -28.03407 -25.33757 -24.89857 -23.04221 -22.16484 -21.43032 -21.22345 -20.55912 -20.15705 -17.51957 -17.30541 -16.51116 -16.38873 -15.27508 -15.25215 -14.78338 -14.62794 -14.40157 -14.32193 -14.05832 -13.54607 -13.46978 -13.30738 -13.16683 -13.00905 -12.68531 -12.33194 -12.04473 -11.90340 -11.85920 -11.70280 -11.47540 -11.24404 -11.13251 -11.10687 -10.95102 -10.92140 -10.58193 -10.42557 -9.89177 -9.48451 -8.95897 -8.86507 -8.85585 -8.55950 -7.88517 -7.48099 -6.48910 -6.30116 -4.44919 1.14720 1.38698 2.88566 3.13018 3.17476 3.26292 3.31780 3.56972 3.65137 4.00370 4.32193 4.44228 4.50162 4.61821 4.81494 4.87335 4.91816 4.94383 4.97094 5.16462 5.27554 5.39943 5.42237 5.47009 5.51444 5.63715 5.64855 5.71832 5.80506 5.82150 5.94504 6.05111 6.12649 6.17840 6.25675 6.39298 6.46825 6.59724 6.67882 6.75545 6.88466 6.91694 6.96651 7.25437 7.27829 7.62013 7.83730 7.94206 8.19935 8.38852 8.71512 8.82991 9.14813 10.27320 10.43110 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.002533 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.249489 B =11052.578098 C =12448.959465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.411 3.589 14 N -0.734 5.734 15 C 0.181 3.819 16 C -0.095 4.095 17 C -0.093 4.093 18 C -0.097 4.097 19 C 0.078 3.922 20 N -0.483 5.483 21 C 0.037 3.963 22 C -0.124 4.124 23 C -0.132 4.132 24 C 0.036 3.964 25 C -0.153 4.153 26 C -0.090 4.090 27 N -0.531 5.531 28 H 0.268 0.732 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.396 0.604 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.288 -5.611 -1.781 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.371 5.371 15 C 0.056 3.944 16 C -0.095 4.095 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.017 4.017 20 N -0.205 5.205 21 C -0.089 4.089 22 C -0.162 4.162 23 C -0.170 4.170 24 C -0.091 4.091 25 C -0.173 4.173 26 C -0.109 4.109 27 N -0.253 5.253 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.084 -4.895 -1.237 20.709 hybrid contribution 0.933 0.150 -0.881 1.291 sum -19.152 -4.745 -2.118 19.844 Atomic orbital electron populations 1.70169 1.07120 1.27177 1.29206 1.26056 0.94854 1.00907 0.93605 0.86333 0.80919 0.81477 0.78410 1.18449 1.19980 1.19962 1.19613 0.94161 0.89370 1.43489 0.89866 1.18217 0.86902 0.91868 0.86539 1.21536 0.98405 0.93485 1.20512 1.20592 0.93440 0.96361 0.95247 1.20602 0.94625 0.95455 1.28736 1.18514 0.84157 0.90291 0.89864 1.44140 1.02557 1.06454 1.83995 1.19939 0.85247 0.87967 1.01261 1.20061 0.95832 1.00427 0.93197 1.21101 0.93895 0.98251 0.97960 1.20954 0.93773 0.99556 0.97297 1.18963 0.89270 1.00408 0.93016 1.62423 1.05384 1.02649 1.50031 1.23356 0.95992 0.91375 0.98134 1.22498 0.95976 0.96314 1.01388 1.22414 0.98743 0.95601 1.00223 1.23001 0.94910 0.95355 0.95790 1.21528 0.95286 1.02658 0.97843 1.20978 0.93724 0.98248 0.97950 1.68211 1.07650 1.24340 1.25066 0.92037 0.88729 0.88954 0.89211 0.76896 0.92325 0.92213 0.85409 0.85429 0.89642 0.93039 0.90840 0.90572 0.91400 0.90844 0.92989 0.90138 0.86466 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.28 11.46 55.55 0.64 -18.64 16 2 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 3 Si 0.90 18.96 29.56 -169.99 -5.02 13.93 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.43 -11.92 9.14 -37.74 -0.34 -12.26 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16 9 C 0.29 8.25 6.55 -85.00 -0.56 7.69 16 10 C -0.32 -8.12 9.83 -38.66 -0.38 -8.50 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.37 -8.58 9.34 -38.87 -0.36 -8.94 16 13 C 0.41 10.18 7.65 -155.31 -1.19 8.99 16 14 N -0.73 -15.00 5.71 -61.58 -0.35 -15.35 16 15 C 0.18 2.89 5.01 -5.19 -0.03 2.87 16 16 C -0.09 -1.31 5.25 -104.59 -0.55 -1.86 16 17 C -0.09 -1.20 9.69 -39.61 -0.38 -1.59 16 18 C -0.10 -1.18 9.97 -39.38 -0.39 -1.58 16 19 C 0.08 0.93 4.86 -83.79 -0.41 0.52 16 20 N -0.48 -5.10 5.28 -167.16 -0.88 -5.98 16 21 C 0.04 0.35 6.43 -1.90 -0.01 0.34 16 22 C -0.12 -0.88 7.06 -24.87 -0.18 -1.06 16 23 C -0.13 -0.90 6.93 -25.37 -0.18 -1.08 16 24 C 0.04 0.32 6.48 -2.76 -0.02 0.30 16 25 C -0.15 -1.81 7.90 -39.38 -0.31 -2.13 16 26 C -0.09 -1.16 9.69 -39.61 -0.38 -1.55 16 27 N -0.53 -14.89 7.89 -10.33 -0.08 -14.97 16 28 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 29 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 32 H 0.40 8.31 8.58 -40.82 -0.35 7.96 16 33 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 34 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.50 7.03 -51.93 -0.36 0.14 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.47 6.30 -51.93 -0.33 0.14 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.12 1.22 7.04 -52.49 -0.37 0.85 16 46 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -30.26 375.27 -12.99 -43.25 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.78 Total: 11.35 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -6.16 Total: -19.25 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.68 Total: -54.94 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.26 -12.99 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338233753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.406 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds