Wall clock time and date at job start Sat Apr 11 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86802 * 120.00283 * 2 1 4 4 H 1.48497 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46879 * 299.99868 * 3 2 1 6 6 H 1.48500 * 109.47105 * 59.99622 * 3 2 1 7 7 C 1.40029 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.41318 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78536 * 179.97438 * 9 7 2 11 11 C 1.38346 * 119.15158 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.67636 * 359.75560 * 11 10 9 13 13 C 1.39754 * 119.49286 * 0.49219 * 12 11 10 14 14 N 1.38827 * 119.58561 * 179.76597 * 13 12 11 15 15 C 1.46505 * 119.99959 * 359.72971 * 14 13 12 16 16 C 1.50695 * 109.47302 * 179.97438 * 15 14 13 17 17 C 1.38287 * 119.92782 * 269.72893 * 16 15 14 18 18 C 1.38107 * 120.07063 * 179.72456 * 17 16 15 19 19 C 1.38908 * 119.92699 * 0.54446 * 18 17 16 20 20 N 1.39672 * 120.07330 * 179.70335 * 19 18 17 21 21 C 1.48537 * 110.99871 * 116.84398 * 20 19 18 22 22 C 1.54938 * 103.22778 * 159.72362 * 21 20 19 23 23 C 1.54598 * 102.91881 * 322.58169 * 22 21 20 24 24 C 1.47902 * 111.00288 * 234.23636 * 20 19 18 25 25 C 1.38914 * 119.85356 * 359.73010 * 19 18 17 26 26 C 1.38102 * 119.92055 * 359.97438 * 25 19 18 27 27 N 1.31983 * 120.83266 * 359.49274 * 13 12 11 28 28 H 0.97003 * 119.99649 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.42487 * 0.02562 * 10 9 7 30 30 H 1.07996 * 120.66092 * 180.02562 * 11 10 9 31 31 H 1.07998 * 120.25303 * 180.26099 * 12 11 10 32 32 H 0.97001 * 120.00287 * 179.72074 * 14 13 12 33 33 H 1.08997 * 109.46959 * 299.99594 * 15 14 13 34 34 H 1.09000 * 109.46991 * 59.99566 * 15 14 13 35 35 H 1.07998 * 119.96319 * 359.97438 * 17 16 15 36 36 H 1.08007 * 120.03391 * 180.27179 * 18 17 16 37 37 H 1.08999 * 110.66335 * 278.15200 * 21 20 19 38 38 H 1.08990 * 110.66897 * 41.28564 * 21 20 19 39 39 H 1.09001 * 110.72005 * 204.23072 * 22 21 20 40 40 H 1.09000 * 110.72789 * 80.93769 * 22 21 20 41 41 H 1.08997 * 110.31207 * 263.04025 * 23 22 21 42 42 H 1.09001 * 110.30925 * 140.87810 * 23 22 21 43 43 H 1.09005 * 109.91647 * 333.51646 * 24 20 19 44 44 H 1.09000 * 109.91777 * 94.60592 * 24 20 19 45 45 H 1.07997 * 120.04120 * 180.02562 * 25 19 18 46 46 H 1.08004 * 119.96197 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0016 10 6 2.0083 -3.6514 0.0016 11 6 1.3033 -4.8418 0.0022 12 6 -0.0822 -4.7944 0.0079 13 6 -0.7283 -3.5551 0.0025 14 7 -2.1157 -3.5054 0.0033 15 6 -2.8931 -4.7471 0.0037 16 6 -4.3639 -4.4190 0.0052 17 6 -5.0374 -4.2745 1.2043 18 6 -6.3840 -3.9681 1.2091 19 6 -7.0645 -3.8163 0.0077 20 7 -8.4278 -3.5126 0.0090 21 6 -8.6788 -2.1889 -0.6165 22 6 -10.1779 -2.2575 -1.0021 23 6 -10.3505 -3.7245 -1.4585 24 6 -9.1895 -4.4905 -0.7978 25 6 -6.3862 -3.9677 -1.1951 26 6 -5.0382 -4.2680 -1.1927 27 7 -0.0361 -2.4314 0.0020 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6555 0.0012 30 1 1.8220 -5.7891 0.0026 31 1 -0.6579 -5.7081 0.0127 32 1 -2.5703 -2.6486 0.0036 33 1 -2.6510 -5.3277 -0.8864 34 1 -2.6499 -5.3278 0.8936 35 1 -4.5088 -4.3974 2.1380 36 1 -6.9085 -3.8511 2.1460 37 1 -8.5021 -1.3857 0.0990 38 1 -8.0590 -2.0587 -1.5035 39 1 -10.3976 -1.5709 -1.8196 40 1 -10.8084 -2.0455 -0.1386 41 1 -10.2803 -3.7938 -2.5440 42 1 -11.3073 -4.1175 -1.1147 43 1 -8.5453 -4.9217 -1.5641 44 1 -9.5797 -5.2791 -0.1542 45 1 -6.9122 -3.8499 -2.1310 46 1 -4.5101 -4.3855 -2.1275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338233753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:07:36 Heat of formation + Delta-G solvation = 58.489059 kcal Electronic energy + Delta-G solvation = -25675.334799 eV Core-core repulsion = 22142.785495 eV Total energy + Delta-G solvation = -3532.549303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -41.29579 -40.13750 -39.02971 -36.63867 -35.17662 -33.64082 -32.29088 -31.98588 -31.24213 -29.85541 -29.46382 -27.26178 -26.12025 -24.01441 -23.44451 -22.99383 -22.17592 -21.83012 -21.27067 -19.27153 -18.44867 -18.03546 -17.18934 -16.82152 -16.48730 -16.17878 -16.09540 -15.81971 -15.29190 -15.12692 -14.95890 -14.85501 -14.55660 -14.39942 -14.13642 -13.81629 -13.67411 -13.49635 -13.03700 -12.96953 -12.84133 -12.72681 -12.59329 -12.30397 -12.26100 -12.16225 -12.12177 -12.09970 -11.71738 -11.47500 -11.31061 -10.67271 -9.93730 -9.83211 -9.71039 -9.51864 -9.43273 -8.29934 -8.22428 -6.47533 0.13466 0.39960 1.05818 1.35264 1.41228 1.56565 1.57189 2.25008 2.45505 2.87158 2.92863 3.00644 3.66254 3.75465 3.83802 3.87161 3.98468 4.04311 4.07116 4.29560 4.34847 4.38807 4.40355 4.55231 4.56900 4.61851 4.73263 4.78976 4.83239 4.86479 4.93236 4.99260 5.01266 5.01933 5.06665 5.11855 5.13073 5.24311 5.26224 5.37731 5.45138 5.62323 5.71887 5.74910 5.79495 5.97260 6.07169 6.23339 6.36772 6.55253 6.83481 6.93374 7.21722 8.34892 8.51693 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.002533 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.249489 B =11052.578098 C =12448.959465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.470 4.470 8 H 0.086 0.914 9 C 0.258 3.742 10 C -0.343 4.343 11 C -0.030 4.030 12 C -0.367 4.367 13 C 0.394 3.606 14 N -0.729 5.729 15 C 0.184 3.816 16 C -0.107 4.107 17 C -0.096 4.096 18 C -0.104 4.104 19 C 0.080 3.920 20 N -0.493 5.493 21 C 0.032 3.968 22 C -0.118 4.118 23 C -0.127 4.127 24 C 0.032 3.968 25 C -0.153 4.153 26 C -0.095 4.095 27 N -0.566 5.566 28 H 0.275 0.725 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.391 0.609 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.670 -5.857 -2.126 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.105 0.895 9 C 0.130 3.870 10 C -0.366 4.366 11 C -0.054 4.054 12 C -0.393 4.393 13 C 0.154 3.846 14 N -0.364 5.364 15 C 0.060 3.940 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.014 4.014 20 N -0.215 5.215 21 C -0.093 4.093 22 C -0.156 4.156 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.173 4.173 26 C -0.114 4.114 27 N -0.288 5.288 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.224 0.776 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.150 0.850 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.504 -5.187 -1.584 22.177 hybrid contribution 1.215 0.099 -0.766 1.439 sum -20.289 -5.087 -2.350 21.049 Atomic orbital electron populations 1.70268 1.08773 1.28521 1.29845 1.26973 0.95743 1.04395 0.92565 0.85112 0.79440 0.76147 0.78667 1.17810 1.19190 1.19207 1.19959 0.94588 0.90464 1.45241 0.89545 1.18705 0.87662 0.93267 0.87330 1.21699 0.99010 0.93773 1.22138 1.21015 0.93706 0.97196 0.93463 1.20958 0.95012 0.96032 1.27270 1.18961 0.85753 0.90357 0.89539 1.44333 1.01315 1.07839 1.82913 1.20062 0.86090 0.86187 1.01653 1.19887 0.94632 1.02281 0.93986 1.21186 0.94322 0.98103 0.97865 1.21116 0.93581 0.99506 0.98049 1.19153 0.90113 0.99227 0.92902 1.62468 1.04537 1.03586 1.50924 1.23415 0.97622 0.90617 0.97681 1.22495 0.94187 0.96921 1.02002 1.22418 0.98443 0.94956 1.00671 1.23082 0.95343 0.95291 0.95681 1.21668 0.94877 1.02144 0.98586 1.21077 0.94302 0.98232 0.97795 1.68181 1.08002 1.26171 1.26495 0.91461 0.87934 0.85204 0.86271 0.77558 0.91772 0.91626 0.84967 0.84381 0.90254 0.93536 0.89448 0.90313 0.90438 0.89607 0.93250 0.89988 0.85017 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.62 11.46 21.84 0.25 -41.37 16 2 C 0.02 1.31 5.50 85.29 0.47 1.78 16 3 Si 0.99 39.39 29.56 68.60 2.03 41.42 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.47 -26.62 9.14 23.46 0.21 -26.41 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.26 15.01 6.55 40.19 0.26 15.27 16 10 C -0.34 -17.85 9.83 22.87 0.22 -17.63 16 11 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 12 C -0.37 -16.74 9.34 22.73 0.21 -16.53 16 13 C 0.39 19.70 7.65 133.40 1.02 20.72 16 14 N -0.73 -29.96 5.71 -348.73 -1.99 -31.96 16 15 C 0.18 5.74 5.01 85.63 0.43 6.17 16 16 C -0.11 -2.91 5.25 -19.84 -0.10 -3.02 16 17 C -0.10 -2.42 9.69 22.25 0.22 -2.20 16 18 C -0.10 -2.44 9.97 22.40 0.22 -2.22 16 19 C 0.08 1.83 4.86 38.21 0.19 2.02 16 20 N -0.49 -9.72 5.28 -682.78 -3.60 -13.33 16 21 C 0.03 0.56 6.43 86.65 0.56 1.12 16 22 C -0.12 -1.43 7.06 31.80 0.22 -1.21 16 23 C -0.13 -1.43 6.93 31.47 0.22 -1.21 16 24 C 0.03 0.51 6.48 86.44 0.56 1.07 16 25 C -0.15 -3.45 7.90 22.40 0.18 -3.28 16 26 C -0.09 -2.39 9.69 22.25 0.22 -2.17 16 27 N -0.57 -32.64 7.89 -186.59 -1.47 -34.11 16 28 H 0.27 13.75 8.29 -92.71 -0.77 12.99 16 29 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 30 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.12 4.64 6.68 -2.91 -0.02 4.62 16 32 H 0.39 16.77 8.58 -92.71 -0.80 15.97 16 33 H 0.06 1.94 7.87 -2.39 -0.02 1.92 16 34 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 35 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 0.85 7.03 -2.39 -0.02 0.83 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 0.80 6.30 -2.38 -0.02 0.78 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.13 2.54 7.04 -2.91 -0.02 2.52 16 46 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -66.49 375.27 0.93 -65.56 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: 0.19 Total: 42.65 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 5.53 Total: -28.87 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.82 Total: -120.76 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -66.49 0.93 -65.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338233753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.045 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds