Wall clock time and date at job start Sat Apr 11 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46689 * 2 1 4 4 C 1.50694 * 109.47319 * 240.00709 * 2 1 3 5 5 H 1.08003 * 119.99906 * 239.99849 * 4 2 1 6 6 C 1.37873 * 120.00492 * 59.99329 * 4 2 1 7 7 N 1.31519 * 120.00558 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99743 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47216 * 269.99923 * 8 6 4 10 10 H 1.48497 * 109.47067 * 29.99829 * 8 6 4 11 11 H 1.48504 * 109.47172 * 149.99968 * 8 6 4 12 12 N 1.46494 * 109.47126 * 120.00032 * 2 1 3 13 13 C 1.46501 * 120.00236 * 60.00666 * 12 2 1 14 14 C 1.34777 * 120.00210 * 239.99716 * 12 2 1 15 15 O 1.21287 * 119.99780 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00340 * 180.02562 * 14 12 2 17 17 C 1.50705 * 109.46896 * 60.00332 * 16 14 12 18 18 C 1.38232 * 119.99985 * 228.92988 * 17 16 14 19 19 C 1.38238 * 119.99618 * 179.76790 * 18 17 16 20 20 C 1.38232 * 119.99869 * 0.50682 * 19 18 17 21 21 C 1.38228 * 120.00428 * 359.74377 * 20 19 18 22 22 C 1.38232 * 119.99639 * 49.20460 * 17 16 14 23 23 C 1.50694 * 109.47503 * 180.02562 * 16 14 12 24 24 C 1.38238 * 120.00098 * 306.35384 * 23 16 14 25 25 C 1.38235 * 120.00344 * 179.76381 * 24 23 16 26 26 C 1.38241 * 119.99641 * 0.50738 * 25 24 23 27 27 C 1.38233 * 119.99837 * 359.74538 * 26 25 24 28 28 C 1.38234 * 120.00182 * 126.62229 * 23 16 14 29 29 H 1.09003 * 109.47194 * 299.99207 * 1 2 3 30 30 H 1.08994 * 109.47422 * 60.00045 * 1 2 3 31 31 H 1.09004 * 109.46303 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99991 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47146 * 89.98879 * 13 12 2 34 34 H 1.08991 * 109.47405 * 209.99554 * 13 12 2 35 35 H 1.09001 * 109.46784 * 329.99901 * 13 12 2 36 36 H 1.09002 * 109.47091 * 300.00703 * 16 14 12 37 37 H 1.07997 * 120.00134 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.99689 * 180.22945 * 19 18 17 39 39 H 1.08009 * 119.99666 * 179.72363 * 20 19 18 40 40 H 1.07998 * 120.00387 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.00316 * 359.97438 * 22 17 16 42 42 H 1.08006 * 119.99989 * 359.97438 * 24 23 16 43 43 H 1.07996 * 120.00570 * 180.23038 * 25 24 23 44 44 H 1.08001 * 119.99826 * 179.72724 * 26 25 24 45 45 H 1.08002 * 119.99908 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00171 * 0.02562 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1373 -0.8593 -3.5566 8 14 0.6258 1.2799 -2.6540 9 1 -0.8021 0.8745 -2.6992 10 1 0.8489 2.1773 -1.4921 11 1 0.9770 1.9956 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1257 1.8916 16 6 3.2961 -0.7462 3.3135 17 6 4.1336 -1.9299 2.9028 18 6 3.9048 -3.1690 3.4712 19 6 4.6699 -4.2557 3.0909 20 6 5.6706 -4.1010 2.1499 21 6 5.9029 -2.8609 1.5853 22 6 5.1344 -1.7752 1.9618 23 6 4.1327 0.2011 4.1341 24 6 5.1920 0.8706 3.5506 25 6 5.9565 1.7433 4.3021 26 6 5.6682 1.9386 5.6399 27 6 4.6121 1.2651 6.2248 28 6 3.8444 0.3964 5.4719 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9026 -0.5281 -4.4376 33 1 2.4159 -2.7376 0.9715 34 1 1.6240 -2.2853 2.5000 35 1 0.6906 -2.3003 0.9845 36 1 2.4485 -1.0892 3.9069 37 1 3.1261 -3.2888 4.2099 38 1 4.4887 -5.2246 3.5322 39 1 6.2714 -4.9492 1.8561 40 1 6.6850 -2.7399 0.8505 41 1 5.3158 -0.8063 1.5207 42 1 5.4203 0.7145 2.5065 43 1 6.7818 2.2692 3.8453 44 1 6.2681 2.6171 6.2282 45 1 4.3871 1.4173 7.2701 46 1 3.0197 -0.1302 5.9290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339160374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:07:55 Heat of formation + Delta-G solvation = 30.285588 kcal Electronic energy + Delta-G solvation = -27887.316338 eV Core-core repulsion = 24321.251290 eV Total energy + Delta-G solvation = -3566.065049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57817 -38.55027 -38.40020 -35.55509 -33.89529 -32.58555 -30.98898 -30.67156 -30.43133 -29.93175 -26.95097 -26.14421 -25.08114 -22.98620 -22.20698 -22.06305 -21.89274 -20.33352 -18.35778 -17.12391 -16.80009 -16.70636 -16.03754 -15.71525 -15.52965 -14.96108 -14.63337 -14.47486 -14.32095 -13.93845 -13.48882 -13.27728 -13.23604 -13.02148 -12.79642 -12.52982 -12.38415 -12.30174 -12.19148 -12.04452 -11.78811 -11.57428 -11.35796 -11.14518 -10.95799 -10.85027 -10.67642 -10.61174 -10.13884 -9.65839 -9.39444 -9.20185 -8.78245 -8.72250 -8.63449 -8.59286 -8.40720 -7.71394 -6.14026 -4.14275 1.34774 1.53827 1.57523 1.61011 3.19856 3.23188 3.36667 3.39312 3.69665 3.90450 4.03704 4.35253 4.79011 4.85738 4.90220 5.05397 5.07310 5.12596 5.15003 5.19566 5.23120 5.29794 5.35210 5.60429 5.65022 5.71441 5.76214 5.77643 6.00659 6.02919 6.13225 6.15953 6.20914 6.22270 6.28668 6.34964 6.49652 6.54921 6.56994 6.63448 6.67309 6.70123 6.81008 6.84022 7.09878 7.10692 7.16597 7.34225 7.63117 8.17787 8.47862 8.84339 8.90952 9.47209 10.98669 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.004876 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.333743 B = 5740.916022 C = 6938.555882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.881 3.119 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.294 1.294 12 N -0.579 5.579 13 C 0.089 3.911 14 C 0.514 3.486 15 O -0.542 6.542 16 C -0.030 4.030 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.098 4.098 23 C -0.057 4.057 24 C -0.075 4.075 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.113 4.113 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 -3.897 18.009 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.222 1.222 12 N -0.309 5.309 13 C -0.055 4.055 14 C 0.300 3.700 15 O -0.421 6.421 16 C -0.051 4.051 17 C -0.066 4.066 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.129 4.129 22 C -0.116 4.116 23 C -0.058 4.058 24 C -0.093 4.093 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.131 4.131 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.807 -3.297 17.671 18.607 hybrid contribution -0.736 0.616 -0.425 1.050 sum 4.071 -2.681 17.246 17.922 Atomic orbital electron populations 1.22466 0.99200 1.01050 0.99257 1.19296 0.89904 0.95159 0.82868 0.92000 1.21138 1.32552 1.14144 0.88359 0.90302 1.24850 0.95665 0.96488 0.95655 1.69876 1.45279 1.40173 0.97930 0.86952 0.80491 0.83990 0.77461 1.20445 1.18845 1.22177 1.47775 1.48887 1.11711 1.22550 1.21667 1.01642 0.82820 0.99369 1.20002 0.79188 0.86871 0.83924 1.90673 1.58077 1.16828 1.76479 1.19320 0.97091 0.93161 0.95576 1.19333 0.96519 0.93294 0.97410 1.20933 1.00037 0.92059 1.00053 1.21024 0.96253 0.98339 0.98243 1.21118 0.98238 0.97259 0.97284 1.21125 0.99667 0.92763 0.99395 1.21117 0.94796 0.99387 0.96301 1.19229 0.95907 0.97241 0.93408 1.21085 0.93710 0.94747 0.99730 1.21114 1.00062 0.98828 0.94224 1.21085 0.97904 0.99913 0.95223 1.20985 0.96324 0.97770 0.99541 1.20935 0.99802 0.99043 0.93323 0.94830 0.93153 0.92527 0.92495 0.92601 0.92839 0.91046 0.87755 0.86178 0.86219 0.86320 0.86028 0.85954 0.85839 0.86272 0.86520 0.86396 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.65 37.16 0.32 -3.17 16 2 C 0.23 5.52 2.23 -69.09 -0.15 5.36 16 3 H 0.06 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.52 -14.38 8.95 -34.44 -0.31 -14.69 16 5 H 0.08 2.35 7.89 -52.48 -0.41 1.93 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.88 21.89 24.37 -169.99 -4.14 17.75 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.22 16 10 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 N -0.58 -11.81 2.75 -175.27 -0.48 -12.29 16 13 C 0.09 1.49 8.22 59.85 0.49 1.98 16 14 C 0.51 10.12 6.03 -10.99 -0.07 10.06 16 15 O -0.54 -12.54 13.94 5.55 0.08 -12.46 16 16 C -0.03 -0.46 1.81 -94.08 -0.17 -0.63 16 17 C -0.07 -0.94 2.96 -104.62 -0.31 -1.24 16 18 C -0.11 -1.36 8.70 -39.58 -0.34 -1.70 16 19 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 20 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 21 C -0.11 -1.56 10.05 -39.58 -0.40 -1.95 16 22 C -0.10 -1.54 8.32 -39.58 -0.33 -1.87 16 23 C -0.06 -0.87 4.48 -104.63 -0.47 -1.33 16 24 C -0.07 -1.18 7.52 -39.58 -0.30 -1.48 16 25 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 28 C -0.11 -1.45 9.67 -39.58 -0.38 -1.84 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 31 H 0.06 1.13 6.66 -51.93 -0.35 0.79 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 34 H 0.05 0.71 5.56 -51.93 -0.29 0.42 16 35 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 36 H 0.10 1.33 6.93 -51.93 -0.36 0.97 16 37 H 0.12 1.15 7.98 -52.49 -0.42 0.73 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.12 2.11 5.82 -52.49 -0.31 1.81 16 42 H 0.12 2.10 5.43 -52.48 -0.29 1.82 16 43 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.24 7.96 -52.49 -0.42 0.82 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -32.64 361.34 -9.03 -41.67 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.20 Total: 5.92 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -4.50 Total: -19.94 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.29 Total: -38.38 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.64 -9.03 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339160374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds