Wall clock time and date at job start Sat Apr 11 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46689 * 2 1 4 4 C 1.50694 * 109.47319 * 240.00709 * 2 1 3 5 5 H 1.08003 * 119.99906 * 239.99849 * 4 2 1 6 6 C 1.37873 * 120.00492 * 59.99329 * 4 2 1 7 7 N 1.31519 * 120.00558 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99743 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47216 * 269.99923 * 8 6 4 10 10 H 1.48497 * 109.47067 * 29.99829 * 8 6 4 11 11 H 1.48504 * 109.47172 * 149.99968 * 8 6 4 12 12 N 1.46494 * 109.47126 * 120.00032 * 2 1 3 13 13 C 1.46501 * 120.00236 * 60.00666 * 12 2 1 14 14 C 1.34777 * 120.00210 * 239.99716 * 12 2 1 15 15 O 1.21287 * 119.99780 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00340 * 180.02562 * 14 12 2 17 17 C 1.50705 * 109.46896 * 60.00332 * 16 14 12 18 18 C 1.38232 * 119.99985 * 228.92988 * 17 16 14 19 19 C 1.38238 * 119.99618 * 179.76790 * 18 17 16 20 20 C 1.38232 * 119.99869 * 0.50682 * 19 18 17 21 21 C 1.38228 * 120.00428 * 359.74377 * 20 19 18 22 22 C 1.38232 * 119.99639 * 49.20460 * 17 16 14 23 23 C 1.50694 * 109.47503 * 180.02562 * 16 14 12 24 24 C 1.38238 * 120.00098 * 306.35384 * 23 16 14 25 25 C 1.38235 * 120.00344 * 179.76381 * 24 23 16 26 26 C 1.38241 * 119.99641 * 0.50738 * 25 24 23 27 27 C 1.38233 * 119.99837 * 359.74538 * 26 25 24 28 28 C 1.38234 * 120.00182 * 126.62229 * 23 16 14 29 29 H 1.09003 * 109.47194 * 299.99207 * 1 2 3 30 30 H 1.08994 * 109.47422 * 60.00045 * 1 2 3 31 31 H 1.09004 * 109.46303 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99991 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47146 * 89.98879 * 13 12 2 34 34 H 1.08991 * 109.47405 * 209.99554 * 13 12 2 35 35 H 1.09001 * 109.46784 * 329.99901 * 13 12 2 36 36 H 1.09002 * 109.47091 * 300.00703 * 16 14 12 37 37 H 1.07997 * 120.00134 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.99689 * 180.22945 * 19 18 17 39 39 H 1.08009 * 119.99666 * 179.72363 * 20 19 18 40 40 H 1.07998 * 120.00387 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.00316 * 359.97438 * 22 17 16 42 42 H 1.08006 * 119.99989 * 359.97438 * 24 23 16 43 43 H 1.07996 * 120.00570 * 180.23038 * 25 24 23 44 44 H 1.08001 * 119.99826 * 179.72724 * 26 25 24 45 45 H 1.08002 * 119.99908 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00171 * 0.02562 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1373 -0.8593 -3.5566 8 14 0.6258 1.2799 -2.6540 9 1 -0.8021 0.8745 -2.6992 10 1 0.8489 2.1773 -1.4921 11 1 0.9770 1.9956 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1257 1.8916 16 6 3.2961 -0.7462 3.3135 17 6 4.1336 -1.9299 2.9028 18 6 3.9048 -3.1690 3.4712 19 6 4.6699 -4.2557 3.0909 20 6 5.6706 -4.1010 2.1499 21 6 5.9029 -2.8609 1.5853 22 6 5.1344 -1.7752 1.9618 23 6 4.1327 0.2011 4.1341 24 6 5.1920 0.8706 3.5506 25 6 5.9565 1.7433 4.3021 26 6 5.6682 1.9386 5.6399 27 6 4.6121 1.2651 6.2248 28 6 3.8444 0.3964 5.4719 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9026 -0.5281 -4.4376 33 1 2.4159 -2.7376 0.9715 34 1 1.6240 -2.2853 2.5000 35 1 0.6906 -2.3003 0.9845 36 1 2.4485 -1.0892 3.9069 37 1 3.1261 -3.2888 4.2099 38 1 4.4887 -5.2246 3.5322 39 1 6.2714 -4.9492 1.8561 40 1 6.6850 -2.7399 0.8505 41 1 5.3158 -0.8063 1.5207 42 1 5.4203 0.7145 2.5065 43 1 6.7818 2.2692 3.8453 44 1 6.2681 2.6171 6.2282 45 1 4.3871 1.4173 7.2701 46 1 3.0197 -0.1302 5.9290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339160374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:07:54 Heat of formation + Delta-G solvation = 11.892359 kcal Electronic energy + Delta-G solvation = -27888.113929 eV Core-core repulsion = 24321.251290 eV Total energy + Delta-G solvation = -3566.862639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84598 -39.75846 -39.54235 -37.27328 -35.20912 -34.47793 -32.22476 -31.98653 -31.61440 -31.03833 -28.15465 -27.60052 -27.10592 -24.09096 -23.64824 -23.08931 -22.90217 -21.71713 -19.89673 -18.93599 -18.18428 -17.81972 -17.44812 -17.35112 -16.69764 -16.36374 -15.93872 -15.65759 -15.46861 -15.30465 -14.99129 -14.68964 -14.44781 -14.22536 -14.13519 -13.99695 -13.90028 -13.63711 -13.46227 -13.30128 -13.23848 -13.07420 -12.96428 -12.56199 -12.36533 -12.07254 -11.94135 -11.88278 -11.65614 -11.60266 -11.37177 -10.81612 -10.76743 -9.80709 -9.73395 -9.69472 -9.46144 -9.39963 -8.36477 -6.40437 0.31518 0.51832 0.56581 0.59285 1.22652 1.32533 1.41026 1.69375 2.25021 2.25916 2.84852 2.97039 2.98684 3.62512 3.76474 3.80720 3.93620 4.07009 4.12090 4.23013 4.24124 4.34302 4.35982 4.41978 4.42980 4.56108 4.59610 4.64133 4.68140 4.72141 4.75182 4.80005 4.95913 5.03523 5.05825 5.13389 5.16714 5.20095 5.30874 5.47270 5.56483 5.59399 5.62696 5.64257 5.67259 5.70782 5.77672 6.12207 6.16137 6.20080 6.61238 6.72042 7.19711 7.35485 8.79756 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.004876 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.333743 B = 5740.916022 C = 6938.555882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.232 3.768 3 H 0.028 0.972 4 C -0.520 4.520 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.940 3.060 9 H -0.251 1.251 10 H -0.265 1.265 11 H -0.296 1.296 12 N -0.587 5.587 13 C 0.090 3.910 14 C 0.508 3.492 15 O -0.587 6.587 16 C -0.017 4.017 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.126 4.126 23 C -0.078 4.078 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.114 4.114 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.268 0.732 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 -5.135 22.017 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 H 0.046 0.954 4 C -0.559 4.559 5 H 0.059 0.941 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.767 3.233 9 H -0.177 1.177 10 H -0.190 1.190 11 H -0.224 1.224 12 N -0.317 5.317 13 C -0.053 4.053 14 C 0.297 3.703 15 O -0.468 6.468 16 C -0.038 4.038 17 C -0.075 4.075 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.159 4.159 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.143 0.857 44 H 0.164 0.836 45 H 0.172 0.828 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.823 -4.565 21.703 22.357 hybrid contribution 0.052 0.961 -1.640 1.901 sum 2.875 -3.605 20.063 20.586 Atomic orbital electron populations 1.22312 0.96506 1.02363 0.99957 1.18950 0.91868 0.93237 0.83108 0.95401 1.21305 1.31487 1.12879 0.90188 0.94079 1.25620 0.97174 0.99375 0.95321 1.70007 1.47190 1.42145 0.98545 0.86002 0.80067 0.80256 0.76973 1.17666 1.18979 1.22389 1.47809 1.49224 1.13075 1.21545 1.21829 1.01030 0.80304 1.02113 1.20888 0.77903 0.86546 0.85012 1.90639 1.59224 1.19145 1.77768 1.19273 0.98180 0.93002 0.93300 1.19338 0.96221 0.94243 0.97656 1.21325 1.00559 0.90670 0.99888 1.21487 0.94863 0.99760 0.97058 1.21452 0.98757 0.96771 0.97019 1.21259 1.00004 0.93636 1.00243 1.21006 0.96955 0.98373 0.98125 1.19359 0.95909 0.97830 0.94704 1.21019 0.95597 0.96837 0.98687 1.21315 1.00350 0.98827 0.95425 1.21459 0.98258 0.99939 0.94378 1.21453 0.95281 0.96431 1.01123 1.21309 1.00577 0.99082 0.92179 0.92398 0.94041 0.90916 0.92324 0.94318 0.88431 0.90677 0.84283 0.82417 0.82475 0.83915 0.86374 0.89737 0.89225 0.85684 0.83630 0.82815 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 8.65 71.98 0.62 -5.79 16 2 C 0.23 11.40 2.23 44.25 0.10 11.50 16 3 H 0.03 1.57 5.96 -2.39 -0.01 1.55 16 4 C -0.52 -29.87 8.95 25.60 0.23 -29.64 16 5 H 0.04 2.61 7.89 -2.91 -0.02 2.58 16 6 C 0.02 1.39 5.45 84.65 0.46 1.85 16 7 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 8 Si 0.94 46.01 24.37 68.60 1.67 47.68 16 9 H -0.25 -11.21 6.87 99.48 0.68 -10.52 16 10 H -0.26 -12.92 6.53 99.48 0.65 -12.28 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 N -0.59 -24.25 2.75 -826.82 -2.28 -26.52 16 13 C 0.09 2.90 8.22 127.77 1.05 3.95 16 14 C 0.51 20.54 6.03 87.66 0.53 21.07 16 15 O -0.59 -28.77 13.94 -3.05 -0.04 -28.81 16 16 C -0.02 -0.49 1.81 -13.03 -0.02 -0.51 16 17 C -0.07 -2.09 2.96 -19.87 -0.06 -2.15 16 18 C -0.11 -2.20 8.70 22.27 0.19 -2.01 16 19 C -0.11 -2.20 10.05 22.27 0.22 -1.97 16 20 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 21 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 22 C -0.13 -4.28 8.32 22.27 0.19 -4.10 16 23 C -0.08 -2.30 4.48 -19.87 -0.09 -2.39 16 24 C -0.10 -3.47 7.52 22.27 0.17 -3.30 16 25 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 26 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 27 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 28 C -0.11 -2.58 9.67 22.27 0.22 -2.37 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 31 H 0.07 2.77 6.66 -2.39 -0.02 2.75 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.04 1.38 7.88 -2.39 -0.02 1.36 16 34 H 0.10 2.25 5.56 -2.39 -0.01 2.23 16 35 H 0.07 2.36 6.43 -2.39 -0.02 2.34 16 36 H 0.14 3.00 6.93 -2.39 -0.02 2.98 16 37 H 0.16 2.06 7.98 -2.91 -0.02 2.04 16 38 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.08 3.41 5.82 -2.91 -0.02 3.40 16 42 H 0.09 3.53 5.43 -2.91 -0.02 3.51 16 43 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 45 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 46 H 0.15 2.37 7.96 -2.91 -0.02 2.35 16 Total: -1.00 -77.73 361.34 5.48 -72.25 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.91 Total: 24.38 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.92 Total: -30.72 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.98 Total: -84.78 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.04 Total: -28.81 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -77.73 5.48 -72.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339160374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.139 kcal (2) G-P(sol) polarization free energy of solvation -77.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds