Wall clock time and date at job start Sat Apr 11 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 120.75142 * 2 1 4 4 C 1.39078 * 119.10948 * 179.97438 * 3 2 1 5 5 N 1.39052 * 119.69466 * 180.02562 * 4 3 2 6 6 C 1.46837 * 111.00092 * 304.21364 * 5 4 3 7 7 C 1.53040 * 109.52634 * 174.15749 * 6 5 4 8 8 C 1.53116 * 109.27670 * 59.17740 * 7 6 5 9 9 C 1.50698 * 109.52705 * 182.44144 * 8 7 6 10 10 H 1.07996 * 120.00006 * 119.68279 * 9 8 7 11 11 C 1.37879 * 119.99969 * 299.68855 * 9 8 7 12 12 N 1.31515 * 120.00019 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00108 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47045 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46941 * 119.99778 * 13 11 9 16 16 H 1.48493 * 109.47506 * 239.99797 * 13 11 9 17 17 C 1.53116 * 109.16390 * 302.35210 * 8 7 6 18 18 C 1.46847 * 110.99876 * 180.02562 * 5 4 3 19 19 N 1.32415 * 120.61180 * 0.02562 * 4 3 2 20 20 C 1.31951 * 121.63375 * 359.97438 * 19 4 3 21 21 C 1.38145 * 120.83787 * 0.02562 * 20 19 4 22 22 Br 1.89101 * 120.34017 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47397 * 270.02360 * 1 2 3 24 24 H 1.08993 * 109.47419 * 30.02621 * 1 2 3 25 25 H 1.09004 * 109.46790 * 150.02312 * 1 2 3 26 26 H 1.07996 * 120.43925 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.46451 * 294.17596 * 6 5 4 28 28 H 1.09001 * 109.46818 * 54.14445 * 6 5 4 29 29 H 1.08997 * 109.50365 * 299.23911 * 7 6 5 30 30 H 1.09000 * 109.50715 * 179.11974 * 7 6 5 31 31 H 1.09005 * 109.52377 * 62.25367 * 8 7 6 32 32 H 0.96999 * 119.99743 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.50147 * 297.71208 * 17 8 7 34 34 H 1.09001 * 109.50664 * 177.59791 * 17 8 7 35 35 H 1.09001 * 109.46335 * 305.85667 * 18 5 4 36 36 H 1.09000 * 109.46472 * 65.82860 * 18 5 4 37 37 H 1.07993 * 119.57745 * 180.28193 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2144 1.1890 0.0000 4 6 3.6046 1.1491 0.0005 5 7 4.3277 2.3368 0.0011 6 6 3.9435 3.1874 -1.1325 7 6 4.6494 4.5405 -1.0190 8 6 6.1647 4.3211 -1.0120 9 6 6.8645 5.6447 -0.8402 10 1 7.5078 5.8088 0.0116 11 6 6.6834 6.6461 -1.7704 12 7 5.9004 6.4461 -2.8080 13 14 7.5503 8.2870 -1.5571 14 1 8.3679 8.2574 -0.3178 15 1 8.4322 8.5365 -2.7255 16 1 6.5405 9.3713 -1.4587 17 6 6.5329 3.3931 0.1489 18 6 5.7724 2.0733 0.0010 19 7 4.2459 -0.0094 0.0005 20 6 3.5982 -1.1590 0.0005 21 6 2.2172 -1.1937 0.0000 22 35 1.3034 -2.8493 0.0007 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6939 2.1353 -0.0004 27 1 4.2342 2.7032 -2.0648 28 1 2.8641 3.3391 -1.1234 29 1 4.3485 5.0314 -0.0935 30 1 4.3762 5.1660 -1.8688 31 1 6.4712 3.8656 -1.9537 32 1 5.7727 7.1508 -3.4622 33 1 6.2616 3.8660 1.0928 34 1 7.6053 3.1989 0.1336 35 1 6.0216 1.4155 0.8337 36 1 6.0542 1.5945 -0.9368 37 1 4.1549 -2.0844 0.0052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335981308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:09:08 Heat of formation + Delta-G solvation = 34.627515 kcal Electronic energy + Delta-G solvation = -19435.512896 eV Core-core repulsion = 16451.516586 eV Total energy + Delta-G solvation = -2983.996310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 324.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68116 -38.08403 -34.63912 -33.72643 -32.13012 -31.07260 -30.07234 -28.66637 -27.79016 -25.70760 -23.50203 -22.71425 -21.73289 -20.78001 -18.74785 -17.06379 -16.76281 -16.27736 -15.59639 -14.89774 -14.66674 -14.42122 -14.04857 -13.55582 -13.10826 -12.95653 -12.86498 -12.68472 -12.55539 -12.27826 -11.86828 -11.47399 -11.34639 -11.05313 -10.91014 -10.51767 -10.48478 -10.31955 -10.13997 -9.71800 -9.57384 -9.49901 -9.30337 -9.01591 -8.78070 -8.36253 -7.82584 -6.03049 -4.08066 0.95312 1.16542 1.51910 3.27870 3.36350 3.40477 3.53420 3.92178 4.41091 4.41715 4.54678 4.91387 4.95840 5.25762 5.27504 5.36839 5.53823 5.58805 5.65530 5.76997 5.80632 5.95403 6.03677 6.05937 6.23432 6.32552 6.36683 6.54939 6.75760 6.87289 6.99810 7.25764 7.30513 7.51379 7.69726 7.94424 8.00108 8.05654 8.41196 8.95670 9.56942 11.03545 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.044354 B = 0.002708 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.131833 B =10336.538396 C =10707.448800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.007 3.993 3 C -0.191 4.191 4 C 0.343 3.657 5 N -0.470 5.470 6 C 0.062 3.938 7 C -0.107 4.107 8 C 0.045 3.955 9 C -0.509 4.509 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.112 4.112 18 C 0.070 3.930 19 N -0.519 5.519 20 C 0.167 3.833 21 C -0.193 4.193 22 Br -0.050 7.050 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.024 0.976 32 H 0.259 0.741 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.163 -17.495 4.742 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.002 4.002 3 C -0.214 4.214 4 C 0.111 3.889 5 N -0.186 5.186 6 C -0.063 4.063 7 C -0.145 4.145 8 C 0.027 3.973 9 C -0.548 4.548 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.149 4.149 18 C -0.056 4.056 19 N -0.235 5.235 20 C 0.006 3.994 21 C -0.276 4.276 22 Br 0.034 6.966 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.696 -17.616 4.993 21.727 hybrid contribution -0.073 0.892 -0.466 1.009 sum -11.770 -16.725 4.527 20.946 Atomic orbital electron populations 1.20987 0.89624 1.03990 1.03466 1.19999 0.96861 0.91032 0.92334 1.21472 0.93212 0.98678 1.08087 1.20305 0.90483 0.89055 0.89057 1.59100 1.07937 1.10037 1.41485 1.22543 0.99898 0.95631 0.88193 1.21771 0.97780 0.91943 1.02998 1.18730 0.91824 0.93953 0.92817 1.21220 1.27342 0.97846 1.08346 0.92553 1.24974 0.95276 0.98649 0.95140 1.69863 1.37800 1.33343 1.12184 0.86554 0.79525 0.83987 0.78049 1.19796 1.21109 1.21062 1.21789 0.97953 0.93859 1.01342 1.22094 0.83742 0.98659 1.01138 1.67889 1.39849 0.97600 1.18162 1.22546 0.89364 0.96241 0.91240 1.22539 0.95962 0.91709 1.17420 1.96611 1.77157 1.24829 1.98003 0.89930 0.90465 0.90259 0.83862 0.94165 0.91523 0.93353 0.88113 0.95776 0.93069 0.92410 0.92417 0.91002 0.93756 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.63 36.00 0.35 -0.77 16 2 C 0.01 0.09 5.92 -104.34 -0.62 -0.53 16 3 C -0.19 -2.66 8.88 -39.23 -0.35 -3.01 16 4 C 0.34 5.64 6.41 -154.98 -0.99 4.65 16 5 N -0.47 -8.52 4.68 -173.23 -0.81 -9.33 16 6 C 0.06 1.16 5.24 -3.84 -0.02 1.14 16 7 C -0.11 -2.39 5.12 -26.65 -0.14 -2.53 16 8 C 0.05 1.09 2.16 -91.65 -0.20 0.89 16 9 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 12 N -0.89 -24.72 11.37 55.43 0.63 -24.09 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 18 C 0.07 1.30 4.65 -3.83 -0.02 1.29 16 19 N -0.52 -8.32 8.68 -12.41 -0.11 -8.43 16 20 C 0.17 2.22 10.93 -17.53 -0.19 2.02 16 21 C -0.19 -2.36 6.24 -39.37 -0.25 -2.61 16 22 Br -0.05 -0.50 31.96 -68.01 -2.17 -2.67 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 25 H 0.08 0.67 6.77 -51.93 -0.35 0.32 16 26 H 0.14 1.82 7.14 -52.49 -0.37 1.45 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.10 6.67 -51.93 -0.35 0.75 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 2.50 6.17 -51.93 -0.32 2.18 16 31 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 36 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 37 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -27.69 315.57 -10.82 -38.51 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.14 Total: -0.33 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.95 Total: -14.30 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.29 Total: -41.85 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.17 Total: -2.67 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.69 -10.82 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335981308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.139 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds