Wall clock time and date at job start Sat Apr 11 2020 01:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47632 * 274.98441 * 3 2 1 5 5 H 1.48506 * 109.47185 * 34.98857 * 3 2 1 6 6 H 1.48500 * 109.47121 * 154.98022 * 3 2 1 7 7 C 1.40230 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 198.04925 * 7 2 1 9 9 C 1.41080 * 120.00223 * 18.04414 * 7 2 1 10 10 C 1.40903 * 120.10484 * 205.09758 * 9 7 2 11 11 C 1.36301 * 119.89388 * 180.02562 * 10 9 7 12 12 C 1.40043 * 120.10741 * 0.02562 * 11 10 9 13 13 C 1.47585 * 119.89957 * 179.97438 * 12 11 10 14 14 O 1.21618 * 119.99908 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00301 * 180.02562 * 13 12 11 16 16 C 1.39973 * 119.99927 * 185.14038 * 15 13 12 17 17 C 1.39412 * 119.77159 * 324.05796 * 16 15 13 18 18 C 1.37512 * 120.01238 * 180.28189 * 17 16 15 19 19 C 1.39366 * 120.21404 * 359.97438 * 18 17 16 20 20 S 1.76126 * 131.57008 * 180.02562 * 19 18 17 21 21 C 1.70643 * 90.83749 * 179.97438 * 20 19 18 22 22 N 1.27933 * 111.52277 * 359.97438 * 21 20 19 23 23 C 1.34682 * 117.84217 * 0.02562 * 22 21 20 24 24 C 1.37808 * 119.76615 * 144.33241 * 16 15 13 25 25 C 1.40041 * 120.20132 * 0.25664 * 12 11 10 26 26 C 1.36299 * 120.10557 * 359.44535 * 25 12 11 27 27 H 0.97001 * 119.99924 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.04979 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.94653 * 180.02562 * 11 10 9 30 30 H 0.96996 * 119.99523 * 5.13537 * 15 13 12 31 31 H 1.07999 * 119.98874 * 0.27560 * 17 16 15 32 32 H 1.07996 * 119.89263 * 179.97438 * 18 17 16 33 33 H 1.08003 * 124.23675 * 179.97438 * 21 20 19 34 34 H 1.07999 * 119.87675 * 359.69689 * 24 16 15 35 35 H 1.07995 * 119.94345 * 179.70560 * 25 12 11 36 36 H 1.08001 * 120.05001 * 180.27833 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3827 2.1073 -1.3947 5 1 1.4946 2.6199 0.8028 6 1 3.5867 1.4120 0.5921 7 6 2.0076 -1.2144 -0.0005 8 1 3.0477 -1.2376 0.2892 9 6 1.3543 -2.4060 -0.3795 10 6 1.8208 -3.6488 0.0929 11 6 1.1866 -4.7974 -0.2764 12 6 0.0734 -4.7438 -1.1244 13 6 -0.6094 -5.9904 -1.5218 14 8 -0.2049 -7.0621 -1.1132 15 7 -1.6806 -5.9412 -2.3382 16 6 -2.3932 -7.1104 -2.6289 17 6 -1.7132 -8.3199 -2.7646 18 6 -2.4076 -9.4705 -3.0559 19 6 -3.7916 -9.4329 -3.2160 20 16 -4.9602 -10.6980 -3.5845 21 6 -6.2375 -9.5675 -3.5342 22 7 -5.8121 -8.3902 -3.2703 23 6 -4.4885 -8.2271 -3.0819 24 6 -3.7614 -7.0569 -2.7846 25 6 -0.3902 -3.5114 -1.6012 26 6 0.2338 -2.3571 -1.2324 27 1 -0.4850 0.8401 0.0004 28 1 2.6794 -3.6912 0.7466 29 1 1.5432 -5.7505 0.0856 30 1 -1.9577 -5.0957 -2.7242 31 1 -0.6408 -8.3530 -2.6410 32 1 -1.8789 -10.4062 -3.1610 33 1 -7.2750 -9.8150 -3.7039 34 1 -4.2787 -6.1150 -2.6770 35 1 -1.2462 -3.4753 -2.2587 36 1 -0.1273 -1.4068 -1.5971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340135444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:09:36 Heat of formation + Delta-G solvation = 26.261037 kcal Electronic energy + Delta-G solvation = -22625.031859 eV Core-core repulsion = 19164.453064 eV Total energy + Delta-G solvation = -3460.578795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.067 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83123 -40.76089 -39.16146 -37.82030 -35.73437 -35.40683 -32.32620 -31.57887 -31.31757 -30.17814 -27.73283 -26.06072 -24.43933 -23.83119 -22.90085 -22.42630 -21.15343 -19.49448 -19.37378 -18.97436 -18.11792 -17.24677 -16.94907 -16.79525 -16.07382 -15.81710 -15.73731 -15.58761 -15.17026 -14.90311 -14.85637 -14.52579 -14.18958 -13.91509 -13.73372 -13.37849 -13.26813 -13.03845 -12.86881 -12.63795 -12.39171 -12.10306 -11.77719 -11.62044 -11.39237 -11.15614 -10.78292 -10.69000 -10.61461 -9.63451 -9.56137 -9.44165 -8.88323 -8.82673 -6.51461 -0.59891 -0.09475 0.29275 0.42068 0.72688 1.13759 1.32242 1.38876 1.42862 1.53576 1.98722 2.06104 2.15574 2.57628 2.76306 3.11885 3.56164 3.65711 3.96651 4.03231 4.17030 4.27107 4.30280 4.41219 4.42981 4.68552 4.89426 4.93022 4.99881 5.04065 5.09905 5.18644 5.25407 5.26583 5.55887 5.73337 5.79744 5.90069 5.96783 6.19603 6.46336 6.51489 6.56100 6.73864 6.85215 7.22481 8.12167 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.032808 B = 0.002264 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.251527 B =12363.749392 C =13082.053220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.468 4.468 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.253 4.253 11 C -0.026 4.026 12 C -0.295 4.295 13 C 0.577 3.423 14 O -0.576 6.576 15 N -0.669 5.669 16 C 0.166 3.834 17 C -0.116 4.116 18 C -0.051 4.051 19 C -0.219 4.219 20 S 0.142 5.858 21 C 0.076 3.924 22 N -0.501 5.501 23 C 0.081 3.919 24 C -0.112 4.112 25 C -0.053 4.053 26 C -0.198 4.198 27 H 0.298 0.702 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.421 0.579 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.244 0.756 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 -12.291 -8.484 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.494 4.494 8 H 0.105 0.895 9 C 0.099 3.901 10 C -0.272 4.272 11 C -0.045 4.045 12 C -0.300 4.300 13 C 0.373 3.627 14 O -0.459 6.459 15 N -0.314 5.314 16 C 0.068 3.932 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.338 4.338 20 S 0.395 5.605 21 C -0.228 4.228 22 N -0.215 5.215 23 C -0.038 4.038 24 C -0.136 4.136 25 C -0.072 4.072 26 C -0.217 4.217 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.260 0.740 31 H 0.157 0.843 32 H 0.176 0.824 33 H 0.260 0.740 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.320 -13.459 -8.316 18.889 hybrid contribution 0.615 2.087 0.334 2.201 sum -9.705 -11.372 -7.981 16.947 Atomic orbital electron populations 1.69759 1.09263 1.31763 1.31013 1.26946 0.95545 1.04901 0.90828 0.85088 0.79202 0.75237 0.79722 1.18315 1.19008 1.18018 1.20163 0.98894 0.92185 1.38206 0.89459 1.18166 0.91103 0.92973 0.87831 1.20867 1.05410 0.92684 1.08242 1.20512 0.93083 0.97249 0.93692 1.18976 1.05003 0.91488 1.14533 1.18501 0.78688 0.89171 0.76326 1.90627 1.66167 1.31746 1.57336 1.43383 1.29690 1.10028 1.48340 1.17569 0.90277 0.87584 0.97745 1.21375 1.01379 0.91516 0.99619 1.20415 0.90218 0.99162 0.97541 1.24078 1.00130 0.97750 1.11838 1.83692 0.96689 1.10276 1.69856 1.28859 1.06530 0.89747 0.97699 1.66252 1.13108 1.24822 1.17284 1.19004 0.88058 0.93695 1.03090 1.20281 0.90849 0.97919 1.04571 1.20735 0.97691 0.91536 0.97216 1.20996 1.00683 0.97408 1.02634 0.89076 0.87586 0.87459 0.74000 0.84313 0.82448 0.73962 0.83757 0.85815 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.20 11.00 21.87 0.24 -36.96 16 2 C 0.04 1.69 5.13 85.35 0.44 2.13 16 3 Si 0.99 33.95 29.60 68.60 2.03 35.98 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 5 H -0.27 -8.70 7.11 99.48 0.71 -8.00 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 7 C -0.47 -22.97 9.04 23.45 0.21 -22.76 16 8 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.10 5.18 5.57 -21.28 -0.12 5.06 16 10 C -0.25 -12.10 9.73 22.47 0.22 -11.89 16 11 C -0.03 -1.20 9.52 22.26 0.21 -0.99 16 12 C -0.30 -12.89 5.89 -19.94 -0.12 -13.01 16 13 C 0.58 23.20 7.60 86.71 0.66 23.86 16 14 O -0.58 -25.49 13.77 -4.09 -0.06 -25.55 16 15 N -0.67 -21.79 5.27 -306.60 -1.61 -23.40 16 16 C 0.17 5.15 6.26 38.02 0.24 5.39 16 17 C -0.12 -3.50 8.68 22.38 0.19 -3.31 16 18 C -0.05 -1.26 10.05 22.37 0.22 -1.03 16 19 C -0.22 -5.34 6.55 22.95 0.15 -5.19 16 20 S 0.14 2.26 23.17 -56.49 -1.31 0.95 16 21 C 0.08 1.21 12.10 130.81 1.58 2.79 16 22 N -0.50 -12.32 10.57 -194.77 -2.06 -14.38 16 23 C 0.08 2.24 6.99 39.78 0.28 2.52 16 24 C -0.11 -3.21 10.00 22.83 0.23 -2.98 16 25 C -0.05 -2.23 9.47 22.25 0.21 -2.02 16 26 C -0.20 -9.49 8.63 22.47 0.19 -9.29 16 27 H 0.30 12.38 8.29 -92.71 -0.77 11.61 16 28 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.11 4.73 7.63 -2.91 -0.02 4.71 16 30 H 0.42 11.64 6.84 -92.71 -0.63 11.01 16 31 H 0.14 4.61 6.24 -2.91 -0.02 4.59 16 32 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.24 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.12 4.21 6.38 -2.91 -0.02 4.19 16 36 H 0.11 5.51 6.20 -2.91 -0.02 5.49 16 Total: -1.00 -61.94 327.63 2.56 -59.38 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.52 Total: 34.69 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 4.81 Total: -30.72 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -3.43 Total: -74.75 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.95 kcal Total: -61.94 2.56 -59.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340135444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.643 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds