Wall clock time and date at job start Sat Apr 11 2020 01:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38190 * 119.96194 * 2 1 4 4 C 1.38669 * 119.95539 * 179.97438 * 3 2 1 5 5 O 1.35923 * 120.05856 * 179.97438 * 4 3 2 6 6 C 1.42905 * 117.00246 * 359.97438 * 5 4 3 7 7 C 1.52992 * 109.47270 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47472 * 55.00014 * 7 6 5 9 9 C 1.47198 * 109.47526 * 294.99669 * 7 6 5 10 10 N 6.82713 * 128.68555 * 24.70619 * 2 1 3 11 11 C 1.53010 * 109.47078 * 174.99944 * 7 6 5 12 12 C 1.50702 * 109.47033 * 184.99916 * 11 7 6 13 13 H 1.08005 * 120.00044 * 0.02562 * 12 11 7 14 14 C 1.37872 * 119.99623 * 179.97438 * 12 11 7 15 15 N 1.31513 * 120.00501 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99883 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47215 * 89.99945 * 16 14 12 18 18 H 1.48500 * 109.47234 * 210.00412 * 16 14 12 19 19 H 1.48501 * 109.46809 * 330.00182 * 16 14 12 20 20 C 1.38854 * 119.88047 * 0.24831 * 4 3 2 21 21 Cl 1.73599 * 120.03586 * 179.74695 * 20 4 3 22 22 C 1.38213 * 119.92370 * 359.49764 * 20 4 3 23 23 C 1.38234 * 119.95940 * 179.97438 * 2 1 3 24 24 N 1.48012 * 119.94408 * 0.02562 * 23 2 1 25 25 O 1.21789 * 119.99927 * 216.86668 * 24 23 2 26 26 O 1.21803 * 119.99737 * 36.85622 * 24 23 2 27 27 H 1.09002 * 109.47251 * 95.70681 * 1 2 3 28 28 H 1.09000 * 109.47404 * 215.70826 * 1 2 3 29 29 H 1.08999 * 109.47282 * 335.70683 * 1 2 3 30 30 H 1.08001 * 120.02122 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.46867 * 59.99790 * 6 5 4 32 32 H 1.09000 * 109.46767 * 300.00555 * 6 5 4 33 33 H 1.08999 * 109.46815 * 304.99895 * 11 7 6 34 34 H 1.08993 * 109.46945 * 65.00041 * 11 7 6 35 35 H 0.96999 * 120.00199 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.97811 * 180.27465 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5838 1.1971 0.0005 5 8 4.2648 2.3734 0.0000 6 6 3.4879 3.5728 -0.0017 7 6 4.4213 4.7851 -0.0027 8 1 5.1103 4.7124 -0.8441 9 6 5.1848 4.8176 1.2554 10 7 5.7743 4.8414 2.2274 11 6 3.5938 6.0658 -0.1302 12 6 4.5173 7.2502 -0.2547 13 1 5.5873 7.1041 -0.2443 14 6 3.9960 8.5201 -0.3828 15 7 2.6931 8.6980 -0.3960 16 14 5.1407 9.9883 -0.5379 17 1 5.4385 10.2345 -1.9717 18 1 4.4886 11.1881 0.0455 19 1 6.4049 9.7091 0.1895 20 6 4.2755 -0.0070 -0.0041 21 17 6.0114 -0.0119 -0.0101 22 6 3.5802 -1.2015 0.0012 23 6 2.1973 -1.1976 0.0005 24 7 1.4551 -2.4782 0.0005 25 8 1.8796 -3.4280 0.6337 26 8 0.4197 -2.5820 -0.6326 27 1 -0.3634 -0.1022 -1.0226 28 1 -0.3634 -0.8344 0.5998 29 1 -0.3634 0.9366 0.4228 30 1 1.6569 2.1324 0.0004 31 1 2.8584 3.5992 0.8878 32 1 2.8597 3.5975 -0.8921 33 1 2.9617 6.0032 -1.0160 34 1 2.9686 6.1840 0.7547 35 1 2.3264 9.5915 -0.4865 36 1 4.1173 -2.1385 0.0020 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349103158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:10:14 Heat of formation + Delta-G solvation = -22.400451 kcal Electronic energy + Delta-G solvation = -23791.923750 eV Core-core repulsion = 19884.049114 eV Total energy + Delta-G solvation = -3907.874637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35940 -41.68520 -39.46711 -37.89351 -37.80540 -37.63630 -35.67627 -34.15097 -33.69080 -32.27520 -29.23670 -28.79063 -27.01378 -25.56063 -23.95406 -23.40395 -23.02573 -20.29590 -19.86393 -19.36417 -18.96854 -18.58359 -18.41466 -17.45963 -16.82016 -16.52669 -16.25318 -15.67315 -15.53746 -14.98195 -14.85978 -14.57148 -14.37274 -14.26334 -14.01362 -13.82252 -13.41841 -13.24439 -13.04420 -12.88137 -12.70141 -12.57379 -12.51709 -12.43459 -12.39042 -12.22933 -12.13523 -12.05784 -11.93217 -11.58489 -11.27489 -10.55305 -10.33335 -9.79180 -8.21874 -6.28597 -1.15425 -0.43008 0.01086 0.22070 0.89515 1.39982 1.43606 1.50493 1.63973 1.90288 1.93148 1.96141 2.41484 3.07649 3.15448 3.16981 3.23634 3.34884 3.63424 3.83361 4.00043 4.11507 4.20114 4.23775 4.38047 4.45498 4.57769 4.61661 4.74395 4.82519 4.89648 5.03277 5.29073 5.43947 5.57083 5.75732 5.85280 6.17066 6.46448 6.71369 6.84876 7.40288 8.88581 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.002804 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.897699 B = 9984.000252 C =11087.903157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 C -0.192 4.192 4 C 0.197 3.803 5 O -0.302 6.302 6 C 0.061 3.939 7 C 0.021 3.979 8 H 0.131 0.869 9 C 0.250 3.750 10 N -0.502 5.502 11 C 0.041 3.959 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.918 5.918 16 Si 0.942 3.058 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.279 1.279 20 C -0.090 4.090 21 Cl -0.035 7.035 22 C -0.007 4.007 23 C -0.091 4.091 24 N 0.036 4.964 25 O -0.191 6.191 26 O -0.144 6.144 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.192 0.808 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.265 0.735 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -18.434 -3.393 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.029 3.971 3 C -0.211 4.211 4 C 0.148 3.852 5 O -0.213 6.213 6 C -0.014 4.014 7 C 0.000 4.000 8 H 0.148 0.852 9 C -0.067 4.067 10 N -0.179 5.179 11 C 0.003 3.997 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.182 4.182 15 N -0.557 5.557 16 Si 0.768 3.232 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.204 1.204 20 C -0.118 4.118 21 Cl -0.006 7.006 22 C -0.026 4.026 23 C -0.174 4.174 24 N 0.554 4.446 25 O -0.400 6.400 26 O -0.366 6.366 27 H 0.129 0.871 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.209 0.791 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.013 -17.609 -1.896 17.965 hybrid contribution 0.450 0.684 -0.205 0.844 sum -2.563 -16.925 -2.102 17.246 Atomic orbital electron populations 1.21222 0.86643 1.05196 1.05604 1.19861 0.99037 0.89023 0.89133 1.21475 0.91209 1.00083 1.08355 1.19093 0.91022 0.85608 0.89489 1.86244 1.36732 1.12544 1.85784 1.23353 0.93401 0.78679 1.05983 1.19240 0.96404 0.95863 0.88497 0.85156 1.29533 0.92439 0.90255 0.94457 1.81094 1.11647 1.11543 1.13655 1.18992 0.94346 0.87878 0.98528 1.21482 0.93413 0.92650 1.50350 0.92914 1.25574 0.96183 1.01385 0.95020 1.69981 1.11764 1.23210 1.50782 0.85792 0.79091 0.79556 0.78715 1.19297 1.21131 1.20414 1.19861 0.86956 0.91412 1.13619 1.98418 1.06422 1.98750 1.97032 1.20535 0.90747 0.98832 0.92534 1.20616 0.91833 0.83304 1.21651 1.43547 1.00450 1.02545 0.98024 1.94566 1.72030 1.31084 1.42351 1.94514 1.12147 1.89554 1.40402 0.87082 0.91362 0.87426 0.79110 0.89109 0.85445 0.93066 0.96820 0.92622 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.63 71.24 0.61 -0.88 16 2 C 0.03 0.48 5.87 -19.88 -0.12 0.37 16 3 C -0.19 -2.78 8.67 22.36 0.19 -2.59 16 4 C 0.20 3.77 6.68 22.52 0.15 3.92 16 5 O -0.30 -6.64 9.34 -92.68 -0.87 -7.51 16 6 C 0.06 1.22 4.09 71.98 0.29 1.52 16 7 C 0.02 0.64 2.45 -12.60 -0.03 0.61 16 8 H 0.13 3.56 8.14 -2.39 -0.02 3.55 16 9 C 0.25 9.19 13.71 89.43 1.23 10.41 16 10 N -0.50 -20.95 18.54 20.02 0.37 -20.58 16 11 C 0.04 1.59 4.42 29.85 0.13 1.73 16 12 C -0.54 -26.08 8.60 25.60 0.22 -25.86 16 13 H 0.05 2.56 7.59 -2.91 -0.02 2.54 16 14 C 0.02 0.92 5.46 84.65 0.46 1.38 16 15 N -0.92 -48.58 13.29 21.45 0.28 -48.29 16 16 Si 0.94 41.01 29.54 68.60 2.03 43.03 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 C -0.09 -1.80 6.33 22.41 0.14 -1.65 16 21 Cl -0.04 -0.76 28.51 -2.72 -0.08 -0.84 16 22 C -0.01 -0.13 9.44 22.28 0.21 0.08 16 23 C -0.09 -1.73 6.49 36.39 0.24 -1.50 16 24 N 0.04 0.80 4.14 -46.44 -0.19 0.61 16 25 O -0.19 -4.79 18.93 18.90 0.36 -4.43 16 26 O -0.14 -3.24 16.74 18.88 0.32 -2.92 16 27 H 0.11 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.07 0.94 6.90 -2.39 -0.02 0.92 16 29 H 0.11 0.77 8.05 -2.39 -0.02 0.75 16 30 H 0.19 1.72 6.30 -2.91 -0.02 1.70 16 31 H 0.09 1.63 7.66 -2.39 -0.02 1.61 16 32 H 0.13 1.75 7.66 -2.39 -0.02 1.73 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 36 H 0.17 2.70 8.00 -2.91 -0.02 2.68 16 Total: -1.00 -62.48 344.20 7.09 -55.39 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: 1.14 Total: -2.01 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 3.73 Total: -12.46 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: 0.46 Total: -68.26 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.19 Total: -14.85 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -62.48 7.09 -55.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349103158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.991 kcal (2) G-P(sol) polarization free energy of solvation -62.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds