Wall clock time and date at job start Sat Apr 11 2020 01:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21884 * 119.99948 * 359.97438 * 13 12 2 15 15 N 1.33579 * 120.00304 * 180.02562 * 13 12 2 16 16 C 1.33178 * 120.00272 * 179.97438 * 15 13 12 17 17 N 1.33674 * 125.23860 * 179.97438 * 16 15 13 18 18 H 0.96996 * 122.81132 * 0.02562 * 17 16 15 19 19 N 1.37940 * 114.37400 * 179.97438 * 17 16 15 20 20 C 1.27971 * 115.12162 * 0.02562 * 19 17 16 21 21 C 1.50697 * 125.05615 * 179.97438 * 20 19 17 22 22 C 1.52998 * 109.47259 * 90.01888 * 21 20 19 23 23 F 1.39896 * 109.47353 * 60.00051 * 22 21 20 24 24 F 1.39907 * 109.47331 * 180.02562 * 22 21 20 25 25 F 1.39901 * 109.47138 * 300.00015 * 22 21 20 26 26 S 1.70863 * 125.23486 * 359.69130 * 16 15 13 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 32 32 H 1.09005 * 109.47446 * 210.02053 * 21 20 19 33 33 H 1.09003 * 109.46891 * 330.02152 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8575 1.1645 2.4118 15 7 2.5927 -0.6477 3.4477 16 6 2.7204 0.0168 4.5948 17 7 3.1541 -0.5071 5.7456 18 1 3.4162 -1.4368 5.8340 19 7 3.1988 0.3854 6.7964 20 6 2.8201 1.5750 6.5153 21 6 2.7787 2.7233 7.4902 22 6 4.1193 3.4602 7.4675 23 9 4.3603 3.9505 6.1796 24 9 4.0811 4.5260 8.3731 25 9 5.1427 2.5778 7.8296 26 16 2.3613 1.6720 4.8204 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 2.2490 -1.6317 1.1527 32 1 1.9813 3.4109 7.2082 33 1 2.5910 2.3413 8.4938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360215400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:10:59 Heat of formation + Delta-G solvation = -102.726875 kcal Electronic energy + Delta-G solvation = -24536.043229 eV Core-core repulsion = 20117.165095 eV Total energy + Delta-G solvation = -4418.878135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.46092 -47.98277 -47.90675 -40.63834 -39.34611 -35.64609 -34.64101 -33.07602 -32.36670 -30.28027 -28.77380 -25.68067 -25.24449 -24.32703 -22.04061 -20.98099 -20.14392 -19.17845 -18.85527 -18.71146 -17.85682 -17.67600 -17.14458 -15.94945 -15.91140 -15.45537 -15.00904 -14.84316 -14.67049 -14.40796 -14.34609 -14.25762 -14.06802 -14.05171 -13.51422 -13.31941 -12.77907 -12.67225 -12.41264 -11.84638 -11.46281 -11.26575 -11.00873 -10.93917 -10.67182 -10.30190 -10.25165 -10.13138 -9.91930 -9.10340 -9.04090 -8.61560 -8.43346 -7.73118 -6.12907 -4.21782 0.64973 0.68884 1.21033 1.30517 1.86896 2.39579 3.25363 3.30714 3.32363 3.35085 3.37875 3.57713 3.85528 4.08127 4.19043 4.37007 4.42577 4.68904 4.87259 5.19702 5.59371 6.47859 6.66266 6.82766 6.95988 7.12547 7.28679 7.50660 7.55656 7.70119 7.90922 8.13437 8.66132 8.78250 9.22717 9.46577 10.93329 Molecular weight = 324.06amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.002691 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.678541 B =10402.004159 C =10736.845249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.678 5.678 13 C 0.657 3.343 14 O -0.592 6.592 15 N -0.604 5.604 16 C 0.350 3.650 17 N -0.488 5.488 18 H 0.451 0.549 19 N -0.198 5.198 20 C -0.032 4.032 21 C -0.076 4.076 22 C 0.459 3.541 23 F -0.172 7.172 24 F -0.176 7.176 25 F -0.176 7.176 26 S 0.242 5.758 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.396 0.604 32 H 0.143 0.857 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 3.296 23.182 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.171 3.829 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.325 5.325 13 C 0.353 3.647 14 O -0.476 6.476 15 N -0.362 5.362 16 C -0.033 4.033 17 N -0.218 5.218 18 H 0.299 0.701 19 N -0.014 5.014 20 C -0.331 4.331 21 C -0.117 4.117 22 C 0.403 3.597 23 F -0.153 7.153 24 F -0.158 7.158 25 F -0.157 7.157 26 S 0.473 5.527 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.161 0.839 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.087 3.833 22.585 23.115 hybrid contribution 0.812 -1.502 -0.659 1.831 sum 3.899 2.330 21.926 22.392 Atomic orbital electron populations 1.22099 0.98275 0.99245 1.00957 1.18808 0.91068 0.93897 0.79082 0.93136 1.21212 1.32535 1.13333 0.90157 0.91928 1.24875 0.94793 0.94952 0.99029 1.69897 1.35863 1.22419 1.23941 0.86413 0.79207 0.79250 0.82039 1.20510 1.21031 1.19818 1.45580 1.64937 1.13750 1.08198 1.16884 0.79445 0.84483 0.83883 1.90703 1.57224 1.16591 1.83078 1.68281 1.34553 1.35818 0.97531 1.24579 0.91808 0.95766 0.91104 1.45762 1.60039 1.13672 1.02333 0.70077 1.74332 1.15613 1.00860 1.10609 1.28209 1.04192 0.95708 1.04958 1.21284 0.95311 0.93608 1.01526 1.20170 0.87421 0.77888 0.74226 1.93276 1.95294 1.88457 1.38312 1.93224 1.96732 1.58067 1.67752 1.93241 1.62519 1.68376 1.91575 1.87234 1.66502 1.03976 0.95034 0.95384 0.88924 0.96633 0.92527 0.77075 0.83896 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.27 7.16 2.56 -69.09 -0.18 6.98 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 5 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.68 -15.45 5.07 -60.07 -0.30 -15.76 16 13 C 0.66 14.47 8.43 -87.98 -0.74 13.73 16 14 O -0.59 -14.02 13.29 5.02 0.07 -13.95 16 15 N -0.60 -11.11 10.59 -18.27 -0.19 -11.30 16 16 C 0.35 5.31 8.16 -89.32 -0.73 4.58 16 17 N -0.49 -5.58 6.83 29.39 0.20 -5.38 16 18 H 0.45 4.06 8.96 -184.20 -1.65 2.41 16 19 N -0.20 -2.05 12.07 33.21 0.40 -1.65 16 20 C -0.03 -0.31 6.34 -13.89 -0.09 -0.40 16 21 C -0.08 -0.43 5.88 -27.89 -0.16 -0.59 16 22 C 0.46 3.61 3.15 37.16 0.12 3.73 16 23 F -0.17 -1.73 17.02 2.25 0.04 -1.69 16 24 F -0.18 -1.32 17.32 2.25 0.04 -1.28 16 25 F -0.18 -1.67 17.02 2.25 0.04 -1.63 16 26 S 0.24 3.33 19.94 -107.50 -2.14 1.18 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.40 8.24 8.64 -40.82 -0.35 7.89 16 32 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -32.51 319.01 -7.22 -39.73 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.94 Total: 3.83 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -1.83 Total: 11.59 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.73 Total: -58.43 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.95 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.12 Total: -4.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.14 Total: 1.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.51 -7.22 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360215400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.994 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds