Wall clock time and date at job start Sat Apr 11 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39906 * 120.17145 * 318.25210 * 3 2 1 5 5 F 1.35091 * 120.11154 * 0.02562 * 4 3 2 6 6 C 1.38235 * 119.77700 * 180.30331 * 4 3 2 7 7 C 1.38278 * 120.12677 * 359.70558 * 6 4 3 8 8 C 1.38406 * 120.34421 * 359.97438 * 7 6 4 9 9 C 1.37906 * 120.21909 * 0.02562 * 8 7 6 10 10 S 1.76199 * 120.06676 * 179.97438 * 9 8 7 11 11 O 1.42097 * 106.40326 * 228.54021 * 10 9 8 12 12 O 1.42105 * 106.39898 * 1.46041 * 10 9 8 13 13 N 1.65601 * 107.21881 * 114.99767 * 10 9 8 14 14 C 1.46506 * 119.99656 * 65.00218 * 13 10 9 15 15 C 1.52995 * 109.46987 * 165.52775 * 14 13 10 16 16 C 1.50706 * 115.55006 * 54.95502 * 15 14 13 17 17 H 1.07997 * 120.00196 * 274.17601 * 16 15 14 18 18 C 1.37882 * 119.99904 * 94.17536 * 16 15 14 19 19 N 1.31517 * 119.99862 * 354.62322 * 18 16 15 20 20 Si 1.86793 * 120.00174 * 174.62463 * 18 16 15 21 21 H 1.48500 * 109.46939 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47174 * 119.99845 * 20 18 16 23 23 H 1.48496 * 109.47061 * 239.99917 * 20 18 16 24 24 C 1.52998 * 117.50312 * 269.28642 * 15 14 13 25 25 C 1.52997 * 117.50094 * 200.62821 * 15 14 13 26 26 H 1.08007 * 119.93972 * 179.72844 * 6 4 3 27 27 H 1.08002 * 119.82836 * 179.97438 * 7 6 4 28 28 H 1.07997 * 119.88752 * 180.02562 * 8 7 6 29 29 H 0.97001 * 120.00484 * 245.00323 * 13 10 9 30 30 H 1.08996 * 109.47216 * 285.52811 * 14 13 10 31 31 H 1.08998 * 109.47269 * 45.52976 * 14 13 10 32 32 H 0.96999 * 119.99838 * 185.00512 * 19 18 16 33 33 H 1.09002 * 117.49538 * 0.02562 * 24 15 14 34 34 H 1.09004 * 117.50209 * 145.01905 * 24 15 14 35 35 H 1.09003 * 117.50086 * 214.98118 * 25 15 14 36 36 H 1.09000 * 117.49857 * 359.97186 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2715 -0.9014 0.8054 5 9 2.6023 -1.7774 1.5862 6 6 4.6538 -0.8895 0.8038 7 6 5.3392 0.0068 0.0044 8 6 4.6484 0.8970 -0.7993 9 6 3.2694 0.8974 -0.8088 10 16 2.3940 2.0329 -1.8330 11 8 1.4064 2.6372 -1.0093 12 8 3.3776 2.7761 -2.5399 13 7 1.5774 1.1425 -2.9656 14 6 0.5063 0.2336 -2.5497 15 6 -0.3124 -0.1833 -3.7731 16 6 0.4745 -0.7915 -4.9053 17 1 0.9358 -0.1547 -5.6456 18 6 0.6055 -2.1611 -4.9962 19 7 0.1351 -2.9315 -4.0397 20 14 1.4510 -2.9223 -6.4777 21 1 1.8868 -1.8475 -7.4052 22 1 2.6343 -3.6984 -6.0278 23 1 0.5035 -3.8259 -7.1783 24 6 -1.5257 0.6747 -4.1371 25 6 -1.7259 -0.7157 -3.5292 26 1 5.1996 -1.5818 1.4278 27 1 6.4192 0.0122 0.0072 28 1 5.1912 1.5935 -1.4211 29 1 1.8083 1.2226 -3.9043 30 1 0.9408 -0.6512 -2.0845 31 1 -0.1418 0.7392 -1.8339 32 1 0.2907 -3.8886 -4.0673 33 1 -1.7404 1.5366 -3.5052 34 1 -1.7550 0.7990 -5.1955 35 1 -2.0868 -1.5057 -4.1879 36 1 -2.0724 -0.7694 -2.4971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404281684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:11:17 Heat of formation + Delta-G solvation = -36.739269 kcal Electronic energy + Delta-G solvation = -25674.616616 eV Core-core repulsion = 21780.536698 eV Total energy + Delta-G solvation = -3894.079918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.073 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.24486 -40.49236 -39.18900 -38.43915 -37.69615 -37.10234 -34.99892 -33.93241 -32.92711 -32.01990 -27.89441 -26.84007 -25.63995 -24.49513 -22.95759 -21.45033 -21.04058 -20.28475 -19.03605 -18.70196 -18.10549 -17.90496 -17.26297 -17.07077 -16.88686 -16.65777 -16.24992 -15.91520 -15.60543 -15.17128 -14.96548 -14.62645 -14.57445 -14.33340 -13.96453 -13.70825 -13.49996 -13.39631 -13.37707 -13.25968 -13.10417 -13.02387 -12.86752 -12.83901 -12.27653 -12.10155 -12.01723 -11.37741 -10.95980 -10.64940 -10.55679 -10.33592 -10.07850 -10.02065 -8.09343 -6.24214 -0.95764 -0.71506 -0.31447 1.20340 1.41376 1.46263 1.55922 1.62753 1.79891 2.26881 2.37031 2.42592 2.56718 2.78269 3.15166 3.26307 3.45182 3.65384 3.75103 4.03734 4.07150 4.19593 4.43495 4.44660 4.50725 4.58161 4.68912 4.71454 4.91565 4.95298 5.00490 5.11082 5.22042 5.52423 5.53748 5.63541 5.75832 6.07274 6.12976 6.36589 6.83004 7.45183 8.97599 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.005628 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.539506 B = 4973.758825 C = 5341.895260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C 0.215 3.785 3 C 0.011 3.989 4 C 0.117 3.883 5 F -0.133 7.133 6 C -0.084 4.084 7 C -0.058 4.058 8 C -0.027 4.027 9 C -0.622 4.622 10 S 2.696 3.304 11 O -0.983 6.983 12 O -0.960 6.960 13 N -1.094 6.094 14 C 0.162 3.838 15 C 0.011 3.989 16 C -0.504 4.504 17 H 0.066 0.934 18 C 0.027 3.973 19 N -0.905 5.905 20 Si 0.951 3.049 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.289 1.289 24 C -0.192 4.192 25 C -0.148 4.148 26 H 0.198 0.802 27 H 0.208 0.792 28 H 0.184 0.816 29 H 0.428 0.572 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.744 4.210 8.945 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C -0.100 4.100 3 C 0.005 3.995 4 C 0.095 3.905 5 F -0.111 7.111 6 C -0.102 4.102 7 C -0.077 4.077 8 C -0.046 4.046 9 C -0.712 4.712 10 S 2.786 3.214 11 O -0.973 6.973 12 O -0.950 6.950 13 N -0.856 5.856 14 C 0.036 3.964 15 C 0.009 3.991 16 C -0.542 4.542 17 H 0.085 0.915 18 C -0.173 4.173 19 N -0.543 5.543 20 Si 0.777 3.223 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.215 1.215 24 C -0.229 4.229 25 C -0.187 4.187 26 H 0.215 0.785 27 H 0.225 0.775 28 H 0.201 0.799 29 H 0.265 0.735 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.815 4.877 9.275 17.340 hybrid contribution 0.038 -1.635 -0.646 1.758 sum 13.854 3.243 8.629 16.640 Atomic orbital electron populations 1.81143 1.12720 1.06412 1.05957 1.25803 0.93416 0.95045 0.95766 1.15561 0.83422 0.99564 1.00921 1.18025 0.91874 0.88836 0.91805 1.91552 1.81207 1.66427 1.71934 1.21987 0.89321 0.99781 0.99141 1.22062 1.03679 0.90728 0.91188 1.21550 0.89506 0.97507 0.96060 1.30874 1.08191 1.16964 1.15195 1.01611 0.73172 0.73500 0.73106 1.93587 1.59816 1.74349 1.69507 1.93561 1.60448 1.68693 1.72301 1.55132 1.47943 1.60516 1.21985 1.21306 0.87906 0.90142 0.97075 1.19101 0.86876 0.98521 0.94637 1.20645 1.33237 0.91288 1.09037 0.91543 1.25703 0.95715 0.97706 0.98221 1.70147 1.45317 1.04916 1.33891 0.85618 0.78051 0.78545 0.80115 1.18606 1.20495 1.21523 1.23111 1.06301 0.93241 1.00281 1.22294 1.02306 0.95558 0.98541 0.78527 0.77481 0.79926 0.73483 0.93809 0.92501 0.93155 0.90292 0.89522 0.91392 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -16.72 15.70 19.00 0.30 -16.42 16 2 C 0.21 8.29 9.43 88.33 0.83 9.12 16 3 C 0.01 0.32 5.66 -21.29 -0.12 0.20 16 4 C 0.12 2.77 7.28 22.67 0.17 2.94 16 5 F -0.13 -3.54 16.81 44.97 0.76 -2.78 16 6 C -0.08 -1.05 10.01 22.28 0.22 -0.83 16 7 C -0.06 -0.54 10.04 22.32 0.22 -0.32 16 8 C -0.03 -0.46 9.54 22.23 0.21 -0.24 16 9 C -0.62 -16.79 5.92 22.53 0.13 -16.66 16 10 S 2.70 89.41 5.44 -56.49 -0.31 89.11 16 11 O -0.98 -38.72 16.22 -128.00 -2.08 -40.79 16 12 O -0.96 -30.95 16.97 -128.00 -2.17 -33.12 16 13 N -1.09 -41.63 5.92 -187.49 -1.11 -42.74 16 14 C 0.16 7.32 3.89 86.38 0.34 7.66 16 15 C 0.01 0.52 1.75 -52.93 -0.09 0.42 16 16 C -0.50 -25.84 8.04 25.60 0.21 -25.63 16 17 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 18 C 0.03 1.43 5.35 84.66 0.45 1.89 16 19 N -0.91 -50.22 12.32 21.45 0.26 -49.95 16 20 Si 0.95 41.19 29.54 68.60 2.03 43.22 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 C -0.19 -8.63 9.93 30.62 0.30 -8.32 16 25 C -0.15 -7.39 8.96 30.61 0.27 -7.11 16 26 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 27 H 0.21 -0.24 8.06 -2.91 -0.02 -0.26 16 28 H 0.18 2.26 7.33 -2.91 -0.02 2.24 16 29 H 0.43 15.58 7.99 -96.74 -0.77 14.80 16 30 H 0.04 2.11 6.21 -2.39 -0.01 2.09 16 31 H 0.06 2.64 5.29 -2.39 -0.01 2.63 16 32 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 34 H 0.09 3.73 8.14 -2.38 -0.02 3.71 16 35 H 0.07 3.61 7.93 -2.39 -0.02 3.59 16 36 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -72.64 327.46 1.21 -71.42 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.38 Total: 18.95 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 3.15 Total: -36.89 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -0.55 Total: -109.11 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -4.25 Total: -73.92 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.76 Total: -2.78 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 89.41 SS G_CDS: -0.31 Total: 89.11 kcal Total: -72.64 1.21 -71.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404281684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.685 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds