Wall clock time and date at job start Sat Apr 11 2020 01:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42095 * 109.47144 * 2 1 4 4 C 1.76205 * 102.99577 * 250.94735 * 2 1 3 5 5 C 1.38302 * 119.96558 * 90.00713 * 4 2 1 6 6 C 1.38258 * 120.13859 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07389 * 359.97438 * 6 5 4 8 8 C 1.38848 * 119.93084 * 0.02562 * 7 6 5 9 9 N 1.39942 * 120.07520 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99888 * 213.15921 * 9 8 7 11 11 O 1.21590 * 120.00148 * 5.30852 * 10 9 8 12 12 N 1.34778 * 119.99529 * 185.30766 * 10 9 8 13 13 C 1.46500 * 119.99744 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47250 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.47013 * 300.00109 * 14 13 12 16 16 C 1.52998 * 109.47116 * 59.99860 * 14 13 12 17 17 C 1.50699 * 109.47359 * 180.02562 * 14 13 12 18 18 H 1.08000 * 119.99976 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99926 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00019 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99622 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46985 * 90.00211 * 21 19 17 23 23 H 1.48503 * 109.47174 * 209.99849 * 21 19 17 24 24 H 1.48494 * 109.47482 * 330.00232 * 21 19 17 25 25 C 1.38095 * 119.96115 * 269.72319 * 4 2 1 26 26 H 1.09003 * 109.47104 * 49.04965 * 1 2 3 27 27 H 1.08995 * 109.47119 * 169.05240 * 1 2 3 28 28 H 1.09006 * 109.46517 * 289.05385 * 1 2 3 29 29 H 1.07998 * 119.92914 * 0.02562 * 5 4 2 30 30 H 1.08007 * 119.95801 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.04169 * 179.97438 * 7 6 5 32 32 H 0.97002 * 119.99898 * 33.15367 * 9 8 7 33 33 H 0.96998 * 120.00450 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.47108 * 299.99994 * 13 12 10 35 35 H 1.09004 * 109.46998 * 60.00117 * 13 12 10 36 36 H 1.08998 * 109.47279 * 59.99928 * 15 14 13 37 37 H 1.08998 * 109.46978 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.46956 * 300.00067 * 15 14 13 39 39 H 1.08997 * 109.47313 * 60.00317 * 16 14 13 40 40 H 1.09010 * 109.46997 * 180.02562 * 16 14 13 41 41 H 1.08998 * 109.47190 * 300.00081 * 16 14 13 42 42 H 0.97001 * 119.99565 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.03514 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5605 -1.6229 5 6 2.3658 0.3523 -2.6502 6 6 2.6762 -0.0835 -3.9250 7 6 2.8325 -1.4327 -4.1764 8 6 2.6771 -2.3517 -3.1472 9 7 2.8342 -3.7194 -3.3986 10 6 2.0978 -4.6189 -2.7166 11 8 1.2298 -4.2408 -1.9536 12 7 2.3236 -5.9375 -2.8803 13 6 1.5236 -6.9152 -2.1386 14 6 1.9793 -8.3293 -2.5038 15 6 1.7937 -8.5529 -4.0060 16 6 3.4561 -8.4988 -2.1416 17 6 1.1559 -9.3352 -1.7413 18 1 0.3849 -8.9993 -1.0636 19 6 1.3868 -10.6841 -1.9089 20 7 2.3252 -11.0931 -2.7345 21 14 0.3666 -11.9308 -0.9632 22 1 -0.8356 -12.2909 -1.7571 23 1 1.1789 -13.1489 -0.7149 24 1 -0.0546 -11.3437 0.3341 25 6 2.3710 -1.9103 -1.8663 26 1 -0.3633 0.6736 -0.7762 27 1 -0.3633 -1.0089 -0.1952 28 1 -0.3632 0.3355 0.9714 29 1 2.2445 1.4078 -2.4561 30 1 2.7974 0.6319 -4.7250 31 1 3.0746 -1.7726 -5.1725 32 1 3.4731 -4.0199 -4.0637 33 1 3.0158 -6.2391 -3.4892 34 1 1.6561 -6.7562 -1.0684 35 1 0.4714 -6.7942 -2.3964 36 1 2.3890 -7.8255 -4.5579 37 1 2.1188 -9.5602 -4.2663 38 1 0.7416 -8.4321 -4.2641 39 1 3.5883 -8.3395 -1.0714 40 1 3.7808 -9.5062 -2.4022 41 1 4.0513 -7.7713 -2.6934 42 1 2.4874 -12.0421 -2.8526 43 1 2.2536 -2.6222 -1.0627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459413805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:11:12 Heat of formation + Delta-G solvation = -40.093005 kcal Electronic energy + Delta-G solvation = -24833.552871 eV Core-core repulsion = 21198.620923 eV Total energy + Delta-G solvation = -3634.931948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54210 -38.71902 -36.57877 -35.85336 -34.62689 -33.41746 -31.25026 -31.03794 -29.37480 -28.89950 -25.79071 -25.69387 -24.96412 -23.31134 -22.65680 -20.70558 -18.96641 -18.70663 -18.10861 -17.10468 -16.33019 -15.89849 -15.60306 -15.37065 -15.02462 -14.87140 -14.70306 -14.46500 -13.95355 -13.67675 -13.61262 -13.17871 -12.95089 -12.91840 -12.73489 -12.26014 -12.20073 -11.86116 -11.79858 -11.47924 -11.25731 -10.93589 -10.73456 -10.59998 -10.44183 -10.33544 -10.25468 -9.94216 -9.70137 -9.39930 -9.30359 -8.85680 -8.62367 -8.51203 -8.42038 -8.08955 -6.07232 -4.17480 0.75343 1.24546 1.74135 2.54238 2.78916 3.24732 3.25386 3.32846 3.36585 3.60451 3.83550 4.32617 4.48175 4.73328 4.89833 5.01748 5.08318 5.14998 5.19982 5.36391 5.41758 5.63291 5.84450 6.01133 6.11187 6.17288 6.21003 6.26416 6.33101 6.42735 6.68429 6.75254 6.79387 6.90950 6.93277 6.95621 7.11169 7.30226 7.49379 7.64717 7.94949 8.04820 8.20061 8.33305 8.73643 8.83846 9.48799 10.94234 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.002556 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.119629 B =10953.969991 C =11854.527063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.332 4.668 3 O -0.864 6.864 4 C -0.440 4.440 5 C -0.080 4.080 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.164 3.836 9 N -0.693 5.693 10 C 0.696 3.304 11 O -0.582 6.582 12 N -0.725 5.725 13 C 0.148 3.852 14 C 0.057 3.943 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.059 0.941 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C -0.046 4.046 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.406 0.594 33 H 0.396 0.604 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.005 0.995 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.085 0.915 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 16.472 -0.378 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.530 4.470 3 O -0.860 6.860 4 C -0.537 4.537 5 C -0.100 4.100 6 C -0.135 4.135 7 C -0.140 4.140 8 C 0.067 3.933 9 N -0.341 5.341 10 C 0.397 3.603 11 O -0.460 6.460 12 N -0.378 5.378 13 C 0.026 3.974 14 C 0.056 3.944 15 C -0.189 4.189 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.067 4.067 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.241 0.759 33 H 0.231 0.769 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.674 16.764 1.024 17.007 hybrid contribution -0.822 0.166 -2.143 2.301 sum 1.851 16.930 -1.119 17.068 Atomic orbital electron populations 1.27728 1.21935 1.08465 1.07057 1.69682 0.86260 0.98925 0.92172 1.93051 1.73365 1.37614 1.81932 1.27512 1.11107 0.98891 1.16199 1.21007 0.97137 0.99295 0.92532 1.20968 1.00482 0.95006 0.96999 1.21048 1.02004 0.93111 0.97871 1.17572 0.99922 0.82346 0.93489 1.42762 1.43738 1.03705 1.43907 1.16063 0.81539 0.81538 0.81199 1.90888 1.34956 1.79161 1.40946 1.45579 1.40575 1.03519 1.48174 1.21688 0.93455 0.87816 0.94474 1.18366 0.93760 0.88658 0.93635 1.21844 0.98090 1.02228 0.96759 1.21832 0.96823 1.02155 0.98039 1.20973 1.18232 0.90405 1.24933 0.92319 1.24878 0.95128 0.98337 0.95138 1.69799 1.31482 1.15026 1.36140 0.86564 0.80098 0.80772 0.80405 1.20733 1.21275 1.19819 1.20921 0.95894 0.93776 0.96151 0.90122 0.86528 0.87668 0.85773 0.85626 0.85456 0.75875 0.76891 0.92460 0.92659 0.97622 0.89567 0.95404 0.95301 0.89612 0.97580 0.92970 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.36 10.70 101.05 1.08 -3.28 16 2 S 1.33 12.51 14.19 -107.50 -1.52 10.99 16 3 O -0.86 -12.79 16.89 -35.23 -0.60 -13.39 16 4 C -0.44 -5.13 5.61 -39.61 -0.22 -5.35 16 5 C -0.08 -0.96 9.44 -39.55 -0.37 -1.33 16 6 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 7 C -0.12 -1.25 9.96 -39.40 -0.39 -1.64 16 8 C 0.16 2.00 6.28 -83.68 -0.53 1.48 16 9 N -0.69 -8.27 5.35 -14.22 -0.08 -8.35 16 10 C 0.70 10.84 8.30 -86.91 -0.72 10.12 16 11 O -0.58 -10.72 14.04 5.29 0.07 -10.65 16 12 N -0.72 -11.51 4.96 -65.22 -0.32 -11.83 16 13 C 0.15 2.89 4.50 -4.04 -0.02 2.87 16 14 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 15 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 16 C -0.13 -2.76 8.08 37.16 0.30 -2.46 16 17 C -0.51 -12.65 8.01 -34.44 -0.28 -12.92 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 20 N -0.89 -22.79 9.35 55.43 0.52 -22.27 16 21 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.05 -0.57 8.36 -39.39 -0.33 -0.89 16 26 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.12 1.53 7.45 -52.49 -0.39 1.14 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.41 3.58 8.83 -40.82 -0.36 3.22 16 33 H 0.40 5.58 6.18 -40.82 -0.25 5.33 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 37 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.03 6.07 -51.92 -0.32 1.72 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 42 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.15 1.85 6.42 -52.49 -0.34 1.51 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -32.59 362.57 -9.26 -41.85 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.03 Total: 7.96 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.74 Total: -14.78 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.12 Total: -42.45 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.52 Total: -24.04 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 12.51 SS G_CDS: -1.52 Total: 10.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.59 -9.26 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459413805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.760 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds