Wall clock time and date at job start Sat Apr 11 2020 01:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47110 * 2 1 4 4 N 1.46501 * 109.46895 * 119.99734 * 2 1 3 5 5 C 1.46499 * 120.00188 * 300.00264 * 4 2 1 6 6 C 1.50706 * 109.46745 * 269.99786 * 5 4 2 7 7 H 1.07994 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00051 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00514 * 180.02562 * 8 6 5 10 10 Si 1.86809 * 119.99696 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47050 * 90.00008 * 10 8 6 12 12 H 1.48500 * 109.47003 * 209.99686 * 10 8 6 13 13 H 1.48500 * 109.46945 * 329.99732 * 10 8 6 14 14 C 1.34773 * 119.99719 * 120.00061 * 4 2 1 15 15 O 1.21279 * 120.00218 * 180.02562 * 14 4 2 16 16 C 1.50700 * 120.00085 * 359.97438 * 14 4 2 17 17 C 1.50706 * 109.47092 * 180.02562 * 16 14 4 18 18 C 1.38267 * 119.97130 * 100.45820 * 17 16 14 19 19 C 1.38178 * 120.02119 * 180.27324 * 18 17 16 20 20 C 1.38484 * 119.97467 * 359.42803 * 19 18 17 21 21 F 1.35095 * 120.02592 * 180.29205 * 20 19 18 22 22 C 1.38439 * 119.94576 * 0.59463 * 20 19 18 23 23 C 1.38214 * 119.97616 * 359.70021 * 22 20 19 24 24 N 1.48001 * 119.98673 * 180.02562 * 23 22 20 25 25 O 1.21799 * 120.00289 * 5.90322 * 24 23 22 26 26 O 1.21805 * 120.00154 * 185.90487 * 24 23 22 27 27 H 1.08997 * 109.47166 * 300.00333 * 1 2 3 28 28 H 1.09006 * 109.47080 * 59.99608 * 1 2 3 29 29 H 1.08993 * 109.47464 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47166 * 239.99667 * 2 1 3 31 31 H 1.09003 * 109.47138 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47060 * 299.99740 * 3 2 1 33 33 H 1.08996 * 109.46859 * 59.99824 * 3 2 1 34 34 H 1.08999 * 109.47132 * 29.99454 * 5 4 2 35 35 H 1.08992 * 109.46892 * 150.00447 * 5 4 2 36 36 H 0.96994 * 120.00245 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47379 * 60.00065 * 16 14 4 38 38 H 1.08996 * 109.47286 * 300.00008 * 16 14 4 39 39 H 1.07991 * 119.98854 * 359.97438 * 18 17 16 40 40 H 1.08004 * 120.01429 * 179.72026 * 19 18 17 41 41 H 1.08004 * 120.00870 * 179.72697 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5427 1.0363 2.3455 8 6 2.5811 1.4109 4.2139 9 7 3.4873 2.2769 4.6119 10 14 1.1285 1.0059 5.3164 11 1 1.4779 -0.1393 6.1949 12 1 0.7969 2.1877 6.1523 13 1 -0.0440 0.6474 4.4786 14 6 2.7931 -1.7864 1.0726 15 8 3.1970 -2.3584 2.0628 16 6 3.1567 -2.3016 -0.2961 17 6 4.0227 -3.5272 -0.1578 18 6 3.4691 -4.7850 -0.3106 19 6 4.2610 -5.9096 -0.1784 20 6 5.6119 -5.7762 0.0955 21 9 6.3883 -6.8749 0.2191 22 6 6.1649 -4.5164 0.2487 23 6 5.3696 -3.3930 0.1221 24 7 5.9607 -2.0460 0.2853 25 8 7.1644 -1.9218 0.4240 26 8 5.2434 -1.0616 0.2810 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.6904 0.2975 2.4843 35 1 1.6238 -1.0225 3.2291 36 1 3.4017 2.7050 5.4780 37 1 3.7015 -1.5310 -0.8416 38 1 2.2483 -2.5587 -0.8408 39 1 2.4165 -4.8885 -0.5286 40 1 3.8275 -6.8921 -0.2933 41 1 7.2175 -4.4113 0.4667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593444069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:12:16 Heat of formation + Delta-G solvation = -69.611699 kcal Electronic energy + Delta-G solvation = -28572.380721 eV Core-core repulsion = 24369.955570 eV Total energy + Delta-G solvation = -4202.425151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.21141 -43.40966 -41.16847 -40.05634 -37.84720 -37.50563 -34.88683 -33.91289 -33.17621 -32.52697 -30.55225 -28.78601 -27.90555 -27.31321 -24.60072 -24.07031 -23.27864 -22.57714 -20.56239 -19.88121 -19.53072 -19.01188 -18.79342 -18.16218 -17.86542 -17.58826 -17.25451 -16.87976 -16.55973 -16.23391 -15.76243 -15.09616 -15.01725 -14.79616 -14.74903 -14.52053 -13.99653 -13.70438 -13.60111 -13.46626 -13.42218 -13.14390 -12.96691 -12.81894 -12.63728 -12.59224 -12.35337 -12.32125 -12.22810 -11.88928 -11.85330 -11.67050 -11.47301 -10.81296 -10.76533 -10.71718 -10.06587 -9.34975 -8.25537 -6.27599 -1.39149 -0.36207 0.10678 0.32443 1.31055 1.35278 1.43282 1.81462 1.95989 2.33801 2.44063 2.75141 3.07724 3.17981 3.20322 3.56511 3.62334 3.71471 3.93270 4.04869 4.16882 4.34599 4.39084 4.48257 4.50413 4.58208 4.72534 4.78669 4.86765 4.94272 4.97482 4.99057 5.10713 5.11350 5.17236 5.39433 5.47754 5.53917 5.67617 5.76016 6.34164 6.36591 6.75527 6.79406 7.29253 7.46544 8.91766 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.004236 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.694459 B = 6609.138649 C = 6961.767322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 C -0.153 4.153 4 N -0.587 5.587 5 C 0.228 3.772 6 C -0.514 4.514 7 H 0.031 0.969 8 C 0.005 3.995 9 N -0.950 5.950 10 Si 0.941 3.059 11 H -0.282 1.282 12 H -0.278 1.278 13 H -0.234 1.234 14 C 0.520 3.480 15 O -0.600 6.600 16 C -0.114 4.114 17 C -0.014 4.014 18 C -0.069 4.069 19 C -0.075 4.075 20 C 0.100 3.900 21 F -0.123 7.123 22 C -0.107 4.107 23 C -0.027 4.027 24 N 0.032 4.968 25 O -0.186 6.186 26 O -0.175 6.175 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.013 0.987 36 H 0.264 0.736 37 H 0.122 0.878 38 H 0.162 0.838 39 H 0.203 0.797 40 H 0.201 0.799 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 -17.801 -18.235 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 C -0.211 4.211 4 N -0.317 5.317 5 C 0.106 3.894 6 C -0.553 4.553 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.592 5.592 10 Si 0.765 3.235 11 H -0.208 1.208 12 H -0.204 1.204 13 H -0.157 1.157 14 C 0.309 3.691 15 O -0.482 6.482 16 C -0.153 4.153 17 C -0.016 4.016 18 C -0.087 4.087 19 C -0.093 4.093 20 C 0.080 3.920 21 F -0.102 7.102 22 C -0.126 4.126 23 C -0.111 4.111 24 N 0.544 4.456 25 O -0.398 6.398 26 O -0.387 6.387 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.179 0.821 39 H 0.220 0.780 40 H 0.219 0.781 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.831 -18.605 -17.670 26.552 hybrid contribution 1.007 1.007 1.499 2.068 sum -5.824 -17.598 -16.171 24.599 Atomic orbital electron populations 1.22148 0.93064 1.03095 1.03096 1.21463 0.95784 0.93385 0.87016 1.22071 1.00186 0.96662 1.02196 1.47995 1.49483 1.26400 1.07838 1.19220 0.95541 0.93121 0.81537 1.21576 1.08737 1.22622 1.02340 0.95064 1.25836 0.99327 0.94781 0.99227 1.70080 1.37295 1.30352 1.21422 0.85815 0.80663 0.77713 0.79329 1.20776 1.20390 1.15692 1.20596 0.77223 0.80301 0.90960 1.90644 1.55126 1.60520 1.41908 1.21158 1.02629 0.95677 0.95808 1.19738 0.89607 0.98184 0.94044 1.21507 1.02961 0.87440 0.96787 1.22071 0.90149 1.03111 0.93962 1.17325 0.90137 0.81251 1.03313 1.91579 1.74743 1.50449 1.93415 1.20945 1.02540 0.90018 0.99145 1.20805 0.95184 0.81016 1.14086 1.43916 1.00608 1.03950 0.97104 1.94470 0.98382 1.93347 1.53627 1.94589 1.59313 1.30570 1.54234 0.93889 0.88556 0.91031 0.86486 0.95177 0.89241 0.93959 0.93149 0.96884 0.92721 0.86020 0.82094 0.77995 0.78147 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.17 71.98 0.66 -2.72 16 2 C 0.13 3.54 3.17 44.99 0.14 3.69 16 3 C -0.15 -5.11 8.47 71.98 0.61 -4.50 16 4 N -0.59 -22.97 2.39 -802.14 -1.91 -24.88 16 5 C 0.23 11.05 3.66 85.63 0.31 11.36 16 6 C -0.51 -30.74 8.38 25.60 0.21 -30.52 16 7 H 0.03 2.13 7.87 -2.91 -0.02 2.11 16 8 C 0.00 0.30 5.47 84.65 0.46 0.77 16 9 N -0.95 -62.47 13.96 21.45 0.30 -62.17 16 10 Si 0.94 45.60 27.47 68.60 1.88 47.48 16 11 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.23 -9.98 6.54 99.48 0.65 -9.33 16 14 C 0.52 20.06 6.07 87.66 0.53 20.59 16 15 O -0.60 -29.35 15.51 -3.03 -0.05 -29.40 16 16 C -0.11 -2.82 3.44 29.10 0.10 -2.72 16 17 C -0.01 -0.33 4.44 -19.86 -0.09 -0.42 16 18 C -0.07 -0.93 9.67 22.26 0.22 -0.72 16 19 C -0.07 -0.87 10.03 22.31 0.22 -0.65 16 20 C 0.10 1.82 7.30 22.38 0.16 1.98 16 21 F -0.12 -2.23 17.27 44.97 0.78 -1.45 16 22 C -0.11 -2.63 9.54 22.31 0.21 -2.42 16 23 C -0.03 -0.82 6.69 36.37 0.24 -0.58 16 24 N 0.03 1.24 4.45 -46.50 -0.21 1.03 16 25 O -0.19 -7.53 18.46 18.89 0.35 -7.18 16 26 O -0.18 -7.67 14.20 18.90 0.27 -7.40 16 27 H 0.04 1.14 6.66 -2.39 -0.02 1.12 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.12 2.35 5.76 -2.39 -0.01 2.34 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.71 6.92 -2.39 -0.02 1.69 16 34 H 0.05 2.25 5.48 -2.39 -0.01 2.23 16 35 H 0.01 0.69 6.85 -2.39 -0.02 0.67 16 36 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 37 H 0.12 3.20 5.76 -2.39 -0.01 3.18 16 38 H 0.16 2.05 7.64 -2.39 -0.02 2.04 16 39 H 0.20 0.90 8.03 -2.92 -0.02 0.88 16 40 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.16 3.88 7.62 -2.91 -0.02 3.86 16 Total: -1.00 -89.93 347.50 6.43 -83.49 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.02 Total: 7.35 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 4.01 Total: -6.87 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.82 Total: -86.02 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: 0.57 Total: -43.99 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -89.93 6.43 -83.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593444069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.882 kcal (2) G-P(sol) polarization free energy of solvation -89.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds