Wall clock time and date at job start Sat Apr 11 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49314 * 2 1 4 4 C 1.53236 * 109.48959 * 239.92177 * 2 1 3 5 5 N 1.47086 * 108.51961 * 186.21114 * 4 2 1 6 6 S 1.65598 * 120.87875 * 231.16251 * 5 4 2 7 7 O 1.42104 * 106.40200 * 218.83409 * 6 5 4 8 8 O 1.42092 * 106.40557 * 351.75177 * 6 5 4 9 9 C 1.76197 * 107.21827 * 105.29607 * 6 5 4 10 10 C 1.37634 * 120.13037 * 111.58555 * 9 6 5 11 11 C 1.38616 * 120.25095 * 179.74581 * 10 9 6 12 12 C 1.38664 * 120.49562 * 0.50716 * 11 10 9 13 13 C 1.37595 * 120.24937 * 359.77295 * 12 11 10 14 14 C 1.40700 * 120.12560 * 291.85768 * 9 6 5 15 15 C 1.41397 * 120.24482 * 0.02562 * 14 9 6 16 16 H 1.07999 * 119.99634 * 24.62597 * 15 14 9 17 17 C 1.39943 * 119.99778 * 204.62906 * 15 14 9 18 18 N 1.30818 * 120.00359 * 18.26094 * 17 15 14 19 19 Si 1.86807 * 119.99808 * 198.25899 * 17 15 14 20 20 H 1.48496 * 109.46950 * 89.99915 * 19 17 15 21 21 H 1.48496 * 109.47088 * 210.00237 * 19 17 15 22 22 H 1.48507 * 109.46922 * 330.00381 * 19 17 15 23 23 C 1.47073 * 118.23640 * 51.18831 * 5 4 2 24 24 C 1.53242 * 108.52038 * 308.80980 * 23 5 4 25 25 H 1.08997 * 109.49939 * 293.87669 * 24 23 5 26 26 C 1.52997 * 109.49470 * 173.79208 * 24 23 5 27 27 N 1.46897 * 109.49475 * 120.05779 * 2 1 3 28 28 H 1.09003 * 109.46883 * 299.94728 * 1 2 3 29 29 H 1.08994 * 109.47475 * 59.94119 * 1 2 3 30 30 H 1.08997 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.63153 * 305.91903 * 4 2 1 32 32 H 1.08996 * 109.63239 * 66.50390 * 4 2 1 33 33 H 1.08000 * 119.87542 * 359.97438 * 10 9 6 34 34 H 1.08001 * 119.75048 * 180.25453 * 11 10 9 35 35 H 1.08004 * 119.87077 * 179.74599 * 12 11 10 36 36 H 1.08000 * 120.12285 * 179.97438 * 13 12 11 37 37 H 0.97001 * 120.00430 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.63276 * 68.52201 * 23 5 4 39 39 H 1.09000 * 109.62609 * 189.10667 * 23 5 4 40 40 H 1.09008 * 109.47024 * 300.13757 * 26 24 23 41 41 H 1.09004 * 109.47307 * 60.13581 * 26 24 23 42 42 H 1.09004 * 109.47375 * 180.13519 * 26 24 23 43 43 H 1.00905 * 110.99886 * 307.21235 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7240 -1.2500 5 7 3.5042 -0.8435 -1.1552 6 16 4.4791 -0.3599 -2.4035 7 8 5.5298 -1.3132 -2.4844 8 8 3.6173 -0.0591 -3.4924 9 6 5.2245 1.1627 -1.9234 10 6 6.5764 1.2208 -1.6714 11 6 7.1663 2.4185 -1.2987 12 6 6.4021 3.5678 -1.1652 13 6 5.0480 3.5318 -1.4065 14 6 4.4392 2.3225 -1.7907 15 6 3.0484 2.2734 -2.0409 16 1 2.5147 1.3396 -1.9425 17 6 2.3636 3.4347 -2.4161 18 7 3.0254 4.4635 -2.8798 19 14 0.5042 3.5158 -2.2550 20 1 0.1461 4.0369 -0.9114 21 1 -0.0442 4.4188 -3.2985 22 1 -0.0673 2.1559 -2.4269 23 6 4.0781 -1.4042 0.0773 24 6 3.4867 -0.6534 1.2751 25 1 3.8235 0.3831 1.2572 26 6 3.9485 -1.3185 2.5733 27 7 2.0202 -0.6936 1.1985 28 1 -0.3633 0.5130 0.8905 29 1 -0.3634 0.5147 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.5957 -1.7172 -1.3060 32 1 1.7776 -0.1507 -2.1388 33 1 7.1804 0.3308 -1.7679 34 1 8.2285 2.4559 -1.1068 35 1 6.8716 4.4947 -0.8703 36 1 4.4547 4.4281 -1.3016 37 1 2.5507 5.2685 -3.1395 38 1 3.8283 -2.4628 0.1490 39 1 5.1610 -1.2806 0.0662 40 1 3.6122 -2.3553 2.5900 41 1 5.0367 -1.2885 2.6298 42 1 3.5257 -0.7856 3.4250 43 1 1.6039 -0.3102 2.0339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601338604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:12:44 Heat of formation + Delta-G solvation = -52.689793 kcal Electronic energy + Delta-G solvation = -27705.667560 eV Core-core repulsion = 24070.189375 eV Total energy + Delta-G solvation = -3635.478186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.73703 -37.58724 -36.32482 -34.84290 -33.99788 -33.49562 -33.33870 -30.27017 -29.57754 -28.09308 -26.70812 -25.52348 -24.51010 -21.70735 -21.20271 -21.00404 -19.76754 -18.15767 -17.70669 -17.21434 -16.09144 -15.63201 -15.46430 -15.44206 -15.09886 -14.44340 -14.19205 -13.69264 -13.52158 -13.33579 -13.11285 -12.83132 -12.63834 -12.41283 -11.99324 -11.94188 -11.77350 -11.69346 -11.61249 -11.43270 -11.31865 -11.15843 -11.08588 -11.00188 -10.81454 -10.63371 -10.60840 -10.51016 -10.17901 -9.91091 -9.46617 -9.29647 -8.66155 -8.07983 -7.99919 -7.67190 -7.13120 -4.78294 1.46547 2.32407 2.67447 2.89210 2.92907 3.05832 3.68741 3.81593 4.28782 4.33106 4.72786 5.01798 5.03280 5.27986 5.28612 5.40521 5.50081 5.54691 5.58956 5.66183 5.82203 5.85996 5.93647 5.99729 6.02927 6.12172 6.15921 6.20539 6.23832 6.30801 6.38748 6.52269 6.55234 6.74814 6.90493 7.01783 7.16400 7.26241 7.29312 7.48316 7.59017 7.62191 7.79134 7.87144 8.25640 8.44307 8.62496 9.80770 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.008649 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.221108 B = 3236.516900 C = 4518.872047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.065 0.935 4 C 0.129 3.871 5 N -1.002 6.002 6 S 2.694 3.306 7 O -0.996 6.996 8 O -0.962 6.962 9 C -0.779 4.779 10 C -0.001 4.001 11 C -0.254 4.254 12 C -0.075 4.075 13 C -0.163 4.163 14 C 0.186 3.814 15 C -0.450 4.450 16 H 0.099 0.901 17 C 0.083 3.917 18 N -0.766 5.766 19 Si 0.901 3.099 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.248 1.248 23 C 0.142 3.858 24 C 0.068 3.932 25 H 0.050 0.950 26 C -0.143 4.143 27 N -0.678 5.678 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.288 0.712 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -4.850 8.445 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 H 0.083 0.917 4 C 0.003 3.997 5 N -0.837 5.837 6 S 2.794 3.206 7 O -0.986 6.986 8 O -0.952 6.952 9 C -0.874 4.874 10 C -0.021 4.021 11 C -0.274 4.274 12 C -0.094 4.094 13 C -0.183 4.183 14 C 0.181 3.819 15 C -0.477 4.477 16 H 0.116 0.884 17 C -0.140 4.140 18 N -0.389 5.389 19 Si 0.724 3.276 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.171 1.171 23 C 0.015 3.985 24 C -0.043 4.043 25 H 0.068 0.932 26 C -0.201 4.201 27 N -0.311 5.311 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.118 -5.742 7.198 10.086 hybrid contribution -0.339 1.919 0.745 2.087 sum -4.457 -3.823 7.943 9.878 Atomic orbital electron populations 1.21839 0.94373 1.02365 1.02044 1.21966 0.94844 0.97315 0.90794 0.91727 1.21567 0.79156 1.00630 0.98307 1.57955 1.15852 1.77924 1.31999 1.01335 0.72426 0.73938 0.72901 1.93444 1.57064 1.61770 1.86341 1.93515 1.66327 1.85530 1.49879 1.29875 1.03545 1.18688 1.35316 1.20245 0.92658 0.96898 0.92272 1.20460 0.98009 0.93900 1.15039 1.20876 0.94686 0.96300 0.97557 1.21453 0.93849 0.98925 1.04096 1.16964 0.91753 0.89673 0.83483 1.20204 0.93074 0.96758 1.37685 0.88380 1.25962 1.01861 0.94494 0.91645 1.69817 1.39226 1.04202 1.25617 0.86399 0.81350 0.80539 0.79348 1.18712 1.19674 1.17087 1.21324 0.97040 0.97400 0.82714 1.21842 0.88320 0.98981 0.95196 0.93155 1.21775 1.01135 1.01295 0.95932 1.60392 1.06014 1.59907 1.04753 0.92706 0.91688 0.91824 0.91477 0.87846 0.87558 0.88807 0.88925 0.86045 0.90059 0.91178 0.90058 0.91788 0.91930 0.92745 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.43 37.16 0.35 -1.55 16 2 C 0.06 0.94 2.95 -67.59 -0.20 0.74 16 3 H 0.06 1.14 6.84 -51.93 -0.36 0.78 16 4 C 0.13 2.22 4.82 -3.60 -0.02 2.20 16 5 N -1.00 -18.66 3.22 -113.24 -0.36 -19.02 16 6 S 2.69 60.63 4.94 -107.50 -0.53 60.10 16 7 O -1.00 -23.30 16.34 -57.18 -0.93 -24.24 16 8 O -0.96 -24.08 14.83 -57.18 -0.85 -24.92 16 9 C -0.78 -18.69 5.97 -38.87 -0.23 -18.92 16 10 C 0.00 -0.02 9.53 -39.66 -0.38 -0.40 16 11 C -0.25 -5.56 10.05 -39.28 -0.39 -5.95 16 12 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 13 C -0.16 -4.00 8.70 -38.88 -0.34 -4.34 16 14 C 0.19 4.67 5.57 -106.82 -0.59 4.07 16 15 C -0.45 -10.91 7.06 -37.74 -0.27 -11.18 16 16 H 0.10 2.23 2.13 -52.49 -0.11 2.12 16 17 C 0.08 1.93 5.13 -17.35 -0.09 1.84 16 18 N -0.77 -18.45 11.00 55.55 0.61 -17.84 16 19 Si 0.90 17.06 29.60 -169.99 -5.03 12.03 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.25 -4.46 6.61 56.52 0.37 -4.09 16 23 C 0.14 2.25 5.80 -3.60 -0.02 2.23 16 24 C 0.07 0.96 3.18 -67.59 -0.21 0.74 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 C -0.14 -1.57 9.43 37.16 0.35 -1.22 16 27 N -0.68 -9.12 6.15 -99.48 -0.61 -9.73 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.87 7.64 -51.93 -0.40 0.47 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.96 5.31 -51.93 -0.28 1.68 16 33 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.12 2.99 6.19 -52.49 -0.32 2.66 16 37 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.29 7.67 -51.93 -0.40 0.89 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.34 3.92 8.65 -39.29 -0.34 3.58 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -29.06 345.86 -10.92 -39.98 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.98 Total: 12.23 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: -2.44 Total: -33.80 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.37 Total: -46.59 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.78 Total: -49.16 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 60.63 SS G_CDS: -0.53 Total: 60.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.06 -10.92 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601338604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.707 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds