Wall clock time and date at job start Sat Apr 11 2020 01:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49512 * 2 1 4 4 C 1.53247 * 109.49223 * 239.94929 * 2 1 3 5 5 N 1.47075 * 108.52044 * 186.20690 * 4 2 1 6 6 S 1.65606 * 120.88185 * 231.18901 * 5 4 2 7 7 O 1.42100 * 106.40060 * 350.06257 * 6 5 4 8 8 O 1.42101 * 106.39958 * 217.14443 * 6 5 4 9 9 C 1.76201 * 107.21822 * 103.60200 * 6 5 4 10 10 C 1.37635 * 120.12806 * 111.37386 * 9 6 5 11 11 C 1.38614 * 120.24901 * 179.69704 * 10 9 6 12 12 C 1.38655 * 120.49617 * 0.60402 * 11 10 9 13 13 C 1.37594 * 120.25505 * 359.67459 * 12 11 10 14 14 C 1.40692 * 120.12598 * 291.64589 * 9 6 5 15 15 C 1.41397 * 120.24575 * 0.02758 * 14 9 6 16 16 H 1.08001 * 119.99960 * 28.83847 * 15 14 9 17 17 C 1.39948 * 119.99762 * 208.83959 * 15 14 9 18 18 N 1.30825 * 120.00150 * 15.83098 * 17 15 14 19 19 Si 1.86799 * 119.99948 * 195.82100 * 17 15 14 20 20 H 1.48504 * 109.46865 * 90.00051 * 19 17 15 21 21 H 1.48493 * 109.47293 * 210.00442 * 19 17 15 22 22 H 1.48498 * 109.47006 * 330.00581 * 19 17 15 23 23 C 1.47081 * 118.23559 * 51.45947 * 5 4 2 24 24 H 1.09001 * 109.62901 * 188.83180 * 23 5 4 25 25 C 1.52997 * 109.63070 * 68.25231 * 23 5 4 26 26 C 1.53699 * 108.27772 * 308.48093 * 23 5 4 27 27 N 1.46898 * 109.49376 * 120.08444 * 2 1 3 28 28 H 1.09006 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46860 * 300.05051 * 1 2 3 30 30 H 1.09004 * 109.47453 * 60.05336 * 1 2 3 31 31 H 1.09002 * 109.62454 * 66.50020 * 4 2 1 32 32 H 1.08997 * 109.78870 * 306.01793 * 4 2 1 33 33 H 1.08000 * 119.87626 * 359.97438 * 10 9 6 34 34 H 1.08000 * 119.75039 * 180.29702 * 11 10 9 35 35 H 1.08004 * 119.87145 * 179.69764 * 12 11 10 36 36 H 1.07995 * 120.12983 * 180.02562 * 13 12 11 37 37 H 0.97000 * 119.99835 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.47184 * 59.99164 * 25 23 5 39 39 H 1.08998 * 109.47427 * 179.97438 * 25 23 5 40 40 H 1.09003 * 109.46901 * 300.00255 * 25 23 5 41 41 H 1.08998 * 109.64792 * 294.07718 * 26 23 5 42 42 H 1.09003 * 109.44085 * 173.96322 * 26 23 5 43 43 H 1.00899 * 111.00029 * 307.20891 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2505 5 7 3.5042 -0.8428 -1.1557 6 16 4.4792 -0.3581 -2.4035 7 8 3.6204 -0.0944 -3.5045 8 8 5.5515 -1.2888 -2.4597 9 6 5.1862 1.1886 -1.9424 10 6 6.5333 1.2802 -1.6756 11 6 7.0933 2.4970 -1.3188 12 6 6.3032 3.6316 -1.2142 13 6 4.9532 3.5623 -1.4707 14 6 4.3749 2.3334 -1.8400 15 6 2.9886 2.2500 -2.1055 16 1 2.4601 1.3244 -1.9313 17 6 2.3013 3.3669 -2.5942 18 7 2.9658 4.3762 -3.0955 19 14 0.4350 3.4165 -2.5308 20 1 -0.0007 4.0205 -1.2460 21 1 -0.0771 4.2329 -3.6605 22 1 -0.1007 2.0354 -2.6353 23 6 4.0779 -1.4098 0.0742 24 1 5.1612 -1.2901 0.0620 25 6 3.7220 -2.8947 0.1704 26 6 3.4867 -0.6539 1.2748 27 7 2.0202 -0.6942 1.1982 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5146 0.8895 30 1 -0.3634 0.5130 -0.8905 31 1 1.7776 -0.1497 -2.1389 32 1 1.5959 -1.7164 -1.3103 33 1 7.1573 0.4017 -1.7489 34 1 8.1522 2.5607 -1.1158 35 1 6.7492 4.5734 -0.9307 36 1 4.3397 4.4473 -1.3891 37 1 2.4894 5.1504 -3.4338 38 1 4.1259 -3.4219 -0.6940 39 1 4.1487 -3.3123 1.0823 40 1 2.6380 -3.0079 0.1909 41 1 3.8236 0.3826 1.2574 42 1 3.8158 -1.1278 2.1997 43 1 1.6039 -0.3112 2.0337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:08 Heat of formation + Delta-G solvation = -50.280260 kcal Electronic energy + Delta-G solvation = -27863.948765 eV Core-core repulsion = 24228.575064 eV Total energy + Delta-G solvation = -3635.373700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.80678 -37.59261 -36.32291 -34.81961 -33.92406 -33.90348 -32.33643 -30.25322 -29.59084 -28.91495 -25.89289 -25.40166 -24.66685 -21.71950 -21.69501 -21.15001 -19.41215 -17.97945 -17.66533 -17.33598 -16.02625 -15.60359 -15.41372 -15.35699 -14.69143 -14.38513 -14.16514 -14.01463 -13.46967 -13.33554 -13.08678 -12.94175 -12.77748 -12.18421 -12.03724 -11.94066 -11.76325 -11.61386 -11.44419 -11.32312 -11.17860 -11.14805 -11.08682 -11.01278 -10.80099 -10.70535 -10.52761 -10.49339 -10.07727 -9.88652 -9.45183 -9.30836 -8.66184 -8.07300 -7.99396 -7.63554 -7.08924 -4.76971 1.47371 2.32139 2.68268 2.91475 2.95056 3.06052 3.71850 3.81122 4.36068 4.37689 4.74769 5.00075 5.09221 5.26672 5.34571 5.42583 5.52893 5.58706 5.63309 5.75042 5.82375 5.96289 5.98767 6.03838 6.05806 6.09262 6.19026 6.22939 6.29833 6.37946 6.43233 6.53210 6.71332 6.77414 6.91412 7.02439 7.19199 7.24121 7.30026 7.48073 7.57682 7.61762 7.77702 7.87995 8.25644 8.47237 8.62150 9.86451 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.008781 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.816443 B = 3187.786585 C = 4598.885319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.065 0.935 4 C 0.129 3.871 5 N -0.997 5.997 6 S 2.694 3.306 7 O -0.961 6.961 8 O -0.995 6.995 9 C -0.775 4.775 10 C -0.003 4.003 11 C -0.251 4.251 12 C -0.076 4.076 13 C -0.160 4.160 14 C 0.189 3.811 15 C -0.456 4.456 16 H 0.099 0.901 17 C 0.084 3.916 18 N -0.772 5.772 19 Si 0.902 3.098 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.249 1.249 23 C 0.160 3.840 24 H 0.088 0.912 25 C -0.150 4.150 26 C 0.050 3.950 27 N -0.679 5.679 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.287 0.713 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -5.279 8.108 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 H 0.083 0.917 4 C 0.003 3.997 5 N -0.833 5.833 6 S 2.794 3.206 7 O -0.952 6.952 8 O -0.986 6.986 9 C -0.871 4.871 10 C -0.023 4.023 11 C -0.271 4.271 12 C -0.095 4.095 13 C -0.179 4.179 14 C 0.184 3.816 15 C -0.484 4.484 16 H 0.117 0.883 17 C -0.138 4.138 18 N -0.395 5.395 19 Si 0.725 3.275 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.172 1.172 23 C 0.053 3.947 24 H 0.106 0.894 25 C -0.209 4.209 26 C -0.081 4.081 27 N -0.311 5.311 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.135 -6.174 6.856 10.111 hybrid contribution -0.331 1.920 0.664 2.059 sum -4.466 -4.254 7.520 9.726 Atomic orbital electron populations 1.21831 0.94444 1.02301 1.02011 1.21972 0.94796 0.97269 0.90875 0.91736 1.21556 0.79294 1.00569 0.98278 1.58041 1.15795 1.77258 1.32161 1.01340 0.72419 0.73956 0.72900 1.93518 1.66485 1.86099 1.49068 1.93443 1.55743 1.62868 1.86511 1.29971 1.03178 1.19212 1.34693 1.20260 0.92800 0.96840 0.92353 1.20472 0.98057 0.93752 1.14862 1.20878 0.94579 0.96418 0.97585 1.21396 0.94012 0.98647 1.03888 1.16973 0.91725 0.89706 0.83162 1.20193 0.93350 0.98872 1.35937 0.88325 1.25921 1.01719 0.94206 0.91987 1.69806 1.39029 1.05842 1.24782 0.86381 0.81443 0.80543 0.79142 1.18799 1.19717 1.17217 1.20938 0.96931 0.93306 0.83539 0.89399 1.21985 1.02962 0.94803 1.01160 1.22342 0.88339 0.99370 0.98019 1.60311 1.06339 1.59723 1.04745 0.91887 0.92706 0.91766 0.87830 0.91512 0.87522 0.88760 0.88887 0.86361 0.90145 0.92758 0.92402 0.91160 0.93987 0.90427 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.43 37.16 0.35 -1.52 16 2 C 0.06 0.93 2.92 -67.59 -0.20 0.73 16 3 H 0.06 1.12 6.89 -51.93 -0.36 0.76 16 4 C 0.13 2.19 4.40 -3.60 -0.02 2.17 16 5 N -1.00 -18.30 2.93 -105.95 -0.31 -18.61 16 6 S 2.69 60.40 4.98 -107.50 -0.54 59.86 16 7 O -0.96 -24.10 14.90 -57.17 -0.85 -24.95 16 8 O -0.99 -23.14 16.26 -57.17 -0.93 -24.07 16 9 C -0.78 -18.58 5.97 -38.88 -0.23 -18.81 16 10 C 0.00 -0.06 9.53 -39.66 -0.38 -0.44 16 11 C -0.25 -5.48 10.05 -39.29 -0.39 -5.88 16 12 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 13 C -0.16 -3.90 8.66 -38.87 -0.34 -4.24 16 14 C 0.19 4.74 5.52 -106.82 -0.59 4.15 16 15 C -0.46 -11.05 7.02 -37.74 -0.27 -11.32 16 16 H 0.10 2.22 2.04 -52.49 -0.11 2.11 16 17 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 18 N -0.77 -18.78 11.14 55.55 0.62 -18.16 16 19 Si 0.90 17.25 29.59 -169.99 -5.03 12.22 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.25 -4.54 6.84 56.52 0.39 -4.15 16 23 C 0.16 2.50 3.15 -67.25 -0.21 2.28 16 24 H 0.09 1.40 7.61 -51.93 -0.40 1.01 16 25 C -0.15 -2.04 9.21 37.16 0.34 -1.70 16 26 C 0.05 0.69 6.12 -3.46 -0.02 0.67 16 27 N -0.68 -8.83 5.97 -106.19 -0.63 -9.46 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 31 H 0.10 1.96 5.23 -51.93 -0.27 1.69 16 32 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 33 H 0.11 2.26 7.33 -52.49 -0.38 1.87 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.12 2.91 6.42 -52.49 -0.34 2.57 16 37 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.95 7.07 -51.93 -0.37 0.58 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.34 3.73 8.77 -39.29 -0.34 3.38 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -29.08 344.13 -10.83 -39.90 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.90 Total: 12.20 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -2.44 Total: -34.11 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.33 Total: -46.23 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -1.78 Total: -49.02 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 60.40 SS G_CDS: -0.54 Total: 59.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.08 -10.83 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.378 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds