Wall clock time and date at job start Sat Apr 11 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46129 * 2 1 4 4 C 1.53040 * 109.46108 * 240.03269 * 2 1 3 5 5 C 1.53119 * 109.27399 * 180.80369 * 4 2 1 6 6 H 1.09001 * 109.57634 * 297.71486 * 5 4 2 7 7 N 1.46506 * 109.51679 * 177.55650 * 5 4 2 8 8 S 1.65603 * 119.99463 * 146.76559 * 7 5 4 9 9 O 1.42104 * 106.40102 * 177.97386 * 8 7 5 10 10 O 1.42091 * 106.40514 * 310.89258 * 8 7 5 11 11 C 1.76199 * 107.21929 * 64.43701 * 8 7 5 12 12 C 1.37639 * 120.12652 * 244.82931 * 11 8 7 13 13 C 1.38609 * 120.25285 * 179.97438 * 12 11 8 14 14 C 1.38655 * 120.49806 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.24903 * 0.02562 * 14 13 12 16 16 C 1.40690 * 120.13236 * 64.55644 * 11 8 7 17 17 C 1.41406 * 120.24111 * 359.97438 * 16 11 8 18 18 H 1.08001 * 119.99700 * 331.36974 * 17 16 11 19 19 C 1.39949 * 119.99557 * 151.37063 * 17 16 11 20 20 N 1.30814 * 120.00456 * 348.22488 * 19 17 16 21 21 Si 1.86805 * 119.99468 * 168.22062 * 19 17 16 22 22 H 1.48501 * 109.47112 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46946 * 120.00017 * 21 19 17 24 24 H 1.48494 * 109.47276 * 240.00034 * 21 19 17 25 25 C 1.53121 * 109.16428 * 57.65745 * 5 4 2 26 26 C 1.53044 * 109.27283 * 302.34009 * 25 5 4 27 27 N 1.46843 * 109.52258 * 59.18226 * 26 25 5 28 28 H 1.09007 * 109.47069 * 300.02402 * 1 2 3 29 29 H 1.08997 * 109.47186 * 60.02120 * 1 2 3 30 30 H 1.08998 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.50360 * 60.86262 * 4 2 1 32 32 H 1.09000 * 109.49797 * 300.74201 * 4 2 1 33 33 H 0.96999 * 120.00507 * 326.48469 * 7 5 4 34 34 H 1.08007 * 119.87332 * 0.02562 * 12 11 8 35 35 H 1.07998 * 119.75587 * 180.02562 * 13 12 11 36 36 H 1.08005 * 119.87737 * 179.97438 * 14 13 12 37 37 H 1.08000 * 120.12480 * 179.97438 * 15 14 13 38 38 H 0.97001 * 120.00304 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.50206 * 62.27890 * 25 5 4 40 40 H 1.08999 * 109.50537 * 182.36657 * 25 5 4 41 41 H 1.09000 * 109.45647 * 179.19703 * 26 25 5 42 42 H 1.08999 * 109.46135 * 299.17673 * 26 25 5 43 43 H 1.00905 * 111.00102 * 62.35191 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5709 -0.7359 -1.2356 6 1 3.9465 0.2869 -1.2677 7 7 4.0641 -1.4754 -2.4002 8 16 5.4828 -1.0257 -3.1265 9 8 5.7067 -1.9540 -4.1788 10 8 5.4008 0.3778 -3.3326 11 6 6.7730 -1.2819 -1.9542 12 6 7.4862 -0.2105 -1.4666 13 6 8.5014 -0.4090 -0.5439 14 6 8.8107 -1.6863 -0.1020 15 6 8.1116 -2.7723 -0.5766 16 6 7.0744 -2.5819 -1.5085 17 6 6.3442 -3.6897 -1.9977 18 1 5.3201 -3.5631 -2.3165 19 6 6.9487 -4.9499 -2.0687 20 7 8.2415 -5.0654 -1.9058 21 14 5.9092 -6.4671 -2.3959 22 1 4.4859 -6.0698 -2.5429 23 1 6.3710 -7.1233 -3.6454 24 1 6.0445 -7.4142 -1.2602 25 6 4.0548 -1.4188 0.0466 26 6 3.4865 -0.6777 1.2590 27 7 2.0193 -0.6918 1.1993 28 1 -0.3633 0.5142 0.8898 29 1 -0.3633 0.5135 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.6894 -0.1980 -2.1400 32 1 1.6659 -1.7446 -1.2577 33 1 3.5618 -2.2309 -2.7434 34 1 7.2534 0.7889 -1.8036 35 1 9.0556 0.4376 -0.1663 36 1 9.6040 -1.8295 0.6169 37 1 8.3545 -3.7664 -0.2313 38 1 8.6605 -5.9388 -1.9553 39 1 3.7125 -2.4535 0.0592 40 1 5.1439 -1.3952 0.0827 41 1 3.8176 -1.1700 2.1734 42 1 3.8402 0.3533 1.2530 43 1 1.6647 -1.6355 1.2424 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601343778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:28 Heat of formation + Delta-G solvation = -92.239132 kcal Electronic energy + Delta-G solvation = -26930.528270 eV Core-core repulsion = 23293.335096 eV Total energy + Delta-G solvation = -3637.193174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19834 -39.37169 -38.05106 -36.69676 -35.89972 -35.61173 -33.15810 -32.02867 -31.36338 -30.42540 -27.83138 -27.34972 -24.03649 -23.45460 -22.94677 -22.38923 -21.55853 -20.22970 -19.50645 -18.54144 -17.96585 -17.26915 -17.05239 -16.22235 -16.05560 -15.97047 -15.83406 -15.28060 -15.09786 -14.94409 -14.75131 -14.48872 -14.27856 -13.70802 -13.41516 -13.25194 -13.04654 -12.98021 -12.96052 -12.94225 -12.83491 -12.80467 -12.55462 -12.51183 -12.36969 -12.12488 -11.87136 -11.78110 -11.65177 -11.49582 -11.20756 -11.10998 -10.22561 -9.81879 -9.42420 -9.29589 -8.79801 -6.60891 -0.18190 0.53645 0.97307 1.34854 1.48114 1.49442 2.13625 2.30751 2.63122 2.97454 3.37159 3.47939 3.69206 3.83095 3.95150 4.05975 4.19502 4.23581 4.33668 4.46001 4.50534 4.55641 4.67999 4.71964 4.78892 4.88447 4.96764 4.98791 5.02942 5.14819 5.15237 5.20761 5.29816 5.34233 5.42210 5.46835 5.52150 5.71538 5.82830 6.01479 6.08628 6.14616 6.20792 6.48215 6.56302 6.68237 6.84165 8.16222 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.005730 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.552551 B = 4885.101899 C = 5447.568724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.148 4.148 5 C 0.154 3.846 6 H 0.076 0.924 7 N -1.105 6.105 8 S 2.714 3.286 9 O -1.002 7.002 10 O -1.012 7.012 11 C -0.784 4.784 12 C -0.017 4.017 13 C -0.247 4.247 14 C -0.075 4.075 15 C -0.184 4.184 16 C 0.171 3.829 17 C -0.472 4.472 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.808 5.808 21 Si 0.974 3.026 22 H -0.248 1.248 23 H -0.271 1.271 24 H -0.256 1.256 25 C -0.172 4.172 26 C 0.067 3.933 27 N -0.678 5.678 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.419 0.581 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.294 0.706 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 3.143 6.063 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.096 0.904 4 C -0.189 4.189 5 C 0.047 3.953 6 H 0.094 0.906 7 N -0.863 5.863 8 S 2.811 3.189 9 O -0.993 6.993 10 O -1.002 7.002 11 C -0.878 4.878 12 C -0.036 4.036 13 C -0.267 4.267 14 C -0.094 4.094 15 C -0.204 4.204 16 C 0.167 3.833 17 C -0.500 4.500 18 H 0.110 0.890 19 C -0.179 4.179 20 N -0.432 5.432 21 Si 0.793 3.207 22 H -0.170 1.170 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.213 4.213 26 C -0.064 4.064 27 N -0.308 5.308 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.676 4.028 5.646 13.580 hybrid contribution 0.832 -1.935 -0.601 2.190 sum -10.844 2.093 5.044 12.141 Atomic orbital electron populations 1.21735 0.92473 1.02596 1.02612 1.21616 0.96521 0.98010 0.86499 0.90399 1.22596 0.92430 1.02840 1.00987 1.20862 0.96149 0.94418 0.83840 0.90579 1.55415 1.40368 1.45803 1.44756 1.00454 0.73296 0.71661 0.73441 1.93487 1.85623 1.64673 1.55467 1.93418 1.87448 1.33380 1.85973 1.30054 1.27287 1.00727 1.29777 1.20530 0.93406 0.96313 0.93400 1.20846 1.03457 0.96918 1.05513 1.21226 0.97432 0.93072 0.97657 1.21555 1.00348 0.98179 1.00297 1.17200 0.89763 0.89791 0.86579 1.20127 1.00454 0.93377 1.36046 0.89027 1.26774 0.96053 1.03538 0.91507 1.69821 1.11551 1.27982 1.33893 0.85266 0.79887 0.76503 0.79001 1.17042 1.19582 1.17964 1.22785 1.01884 1.00677 0.95998 1.21914 0.87524 1.00487 0.96426 1.60769 1.08054 1.22849 1.39082 0.91609 0.91284 0.92116 0.90218 0.90287 0.74582 0.86400 0.85709 0.86180 0.86909 0.89479 0.91292 0.92402 0.89864 0.91095 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.47 71.98 0.68 -1.30 16 2 C 0.08 1.60 3.03 44.94 0.14 1.74 16 3 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.15 -3.18 4.88 30.65 0.15 -3.03 16 5 C 0.15 4.46 2.84 45.07 0.13 4.59 16 6 H 0.08 2.37 7.53 -2.39 -0.02 2.35 16 7 N -1.10 -37.45 4.59 -169.04 -0.78 -38.22 16 8 S 2.71 118.73 4.94 -56.49 -0.28 118.45 16 9 O -1.00 -50.69 16.61 -128.00 -2.13 -52.81 16 10 O -1.01 -45.98 16.33 -128.00 -2.09 -48.07 16 11 C -0.78 -36.80 4.77 22.73 0.11 -36.70 16 12 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 13 C -0.25 -10.23 10.05 22.46 0.23 -10.01 16 14 C -0.08 -3.24 10.02 22.22 0.22 -3.02 16 15 C -0.18 -8.97 8.66 22.73 0.20 -8.77 16 16 C 0.17 8.55 5.18 -21.29 -0.11 8.44 16 17 C -0.47 -23.32 7.65 23.46 0.18 -23.14 16 18 H 0.09 4.23 5.73 -2.91 -0.02 4.22 16 19 C 0.04 1.86 5.24 85.26 0.45 2.31 16 20 N -0.81 -39.91 10.87 21.83 0.24 -39.67 16 21 Si 0.97 36.06 29.58 68.60 2.03 38.09 16 22 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 25 C -0.17 -4.99 5.69 30.65 0.17 -4.81 16 26 C 0.07 1.58 6.55 86.33 0.57 2.14 16 27 N -0.68 -13.53 6.50 -491.67 -3.20 -16.72 16 28 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 12.66 8.55 -96.75 -0.83 11.83 16 34 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.11 5.67 6.23 -2.91 -0.02 5.65 16 38 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.06 6.53 -2.39 -0.02 2.04 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.35 6.21 8.79 -89.69 -0.79 5.42 16 Total: -1.00 -62.95 352.69 -3.46 -66.41 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: -0.58 Total: 44.62 kcal Atomic # 6 Polarization: -75.40 SS G_CDS: 3.32 Total: -72.08 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -3.74 Total: -94.62 kcal Atomic # 8 Polarization: -96.67 SS G_CDS: -4.22 Total: -100.88 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 16 Polarization: 118.73 SS G_CDS: -0.28 Total: 118.45 kcal Total: -62.95 -3.46 -66.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.825 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds