Wall clock time and date at job start Sat Apr 11 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.87817 * 2 1 4 4 C 1.54324 * 109.88062 * 121.02117 * 2 1 3 5 5 C 1.55155 * 102.94292 * 141.76021 * 4 2 1 6 6 H 1.09003 * 111.00306 * 82.60916 * 5 4 2 7 7 C 1.52999 * 111.00686 * 206.42225 * 5 4 2 8 8 N 1.46901 * 109.47353 * 185.00183 * 7 5 4 9 9 C 1.54911 * 101.58169 * 324.49675 * 5 4 2 10 10 N 1.47022 * 110.00744 * 238.90010 * 2 1 3 11 11 S 1.65601 * 125.64808 * 61.55588 * 10 2 1 12 12 O 1.42103 * 106.40406 * 210.45420 * 11 10 2 13 13 O 1.42100 * 106.40353 * 343.36764 * 11 10 2 14 14 C 1.76193 * 107.22130 * 96.91355 * 11 10 2 15 15 C 1.37639 * 120.13248 * 114.69820 * 14 11 10 16 16 C 1.38613 * 120.24994 * 179.74176 * 15 14 11 17 17 C 1.38655 * 120.50339 * 0.51478 * 16 15 14 18 18 C 1.37606 * 120.24540 * 359.76753 * 17 16 15 19 19 C 1.40704 * 120.12866 * 294.97117 * 14 11 10 20 20 C 1.41396 * 120.23976 * 0.02842 * 19 14 11 21 21 H 1.08007 * 119.99831 * 330.51440 * 20 19 14 22 22 C 1.39942 * 120.00176 * 150.52019 * 20 19 14 23 23 N 1.30817 * 119.99965 * 341.71872 * 22 20 19 24 24 Si 1.86802 * 120.00223 * 161.71631 * 22 20 19 25 25 H 1.48502 * 109.47009 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47226 * 119.99928 * 24 22 20 27 27 H 1.48497 * 109.47111 * 240.00130 * 24 22 20 28 28 H 1.09000 * 109.46672 * 300.70039 * 1 2 3 29 29 H 1.09000 * 109.46845 * 60.69314 * 1 2 3 30 30 H 1.08996 * 109.47480 * 180.70091 * 1 2 3 31 31 H 1.08997 * 110.71781 * 260.12242 * 4 2 1 32 32 H 1.08998 * 110.72168 * 23.22193 * 4 2 1 33 33 H 1.09003 * 109.47095 * 305.00366 * 7 5 4 34 34 H 1.08996 * 109.46990 * 64.99631 * 7 5 4 35 35 H 1.00901 * 110.99887 * 180.02562 * 8 7 5 36 36 H 1.00894 * 110.99398 * 303.94927 * 8 7 5 37 37 H 1.09003 * 110.36444 * 155.85093 * 9 5 4 38 38 H 1.08997 * 110.36449 * 278.16609 * 9 5 4 39 39 H 1.08003 * 119.87187 * 0.02562 * 15 14 11 40 40 H 1.07997 * 119.74858 * 180.25616 * 16 15 14 41 41 H 1.07994 * 119.87916 * 179.73875 * 17 16 15 42 42 H 1.08003 * 120.12663 * 180.02562 * 18 17 16 43 43 H 0.97002 * 120.00201 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7479 1.2437 5 6 3.2899 -1.5103 0.6953 6 1 4.1665 -0.8632 0.6648 7 6 3.5688 -2.7681 1.5204 8 7 4.8099 -3.3975 1.0495 9 6 2.8194 -1.8771 -0.7343 10 7 2.0330 -0.7136 -1.1829 11 16 1.7610 -0.2821 -2.7584 12 8 1.7574 -1.4882 -3.5099 13 8 0.6689 0.6269 -2.7427 14 6 3.1648 0.6359 -3.2977 15 6 3.9779 0.1361 -4.2894 16 6 5.0799 0.8587 -4.7193 17 6 5.3824 2.0862 -4.1498 18 6 4.5868 2.6027 -3.1529 19 6 3.4623 1.8803 -2.7123 20 6 2.6378 2.4009 -1.6883 21 1 1.5872 2.1518 -1.6620 22 6 3.1830 3.2389 -0.7091 23 7 4.4764 3.2620 -0.5142 24 14 2.0640 4.3246 0.3197 25 1 0.6533 4.1145 -0.0942 26 1 2.2168 3.9742 1.7546 27 1 2.4321 5.7488 0.1160 28 1 -0.3633 0.5247 0.8837 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0275 0.0126 31 1 2.3504 -0.0434 2.0211 32 1 1.3049 -1.4435 1.6204 33 1 3.6747 -2.4975 2.5710 34 1 2.7409 -3.4679 1.4073 35 1 5.0159 -4.2314 1.5790 36 1 4.7607 -3.5994 0.0622 37 1 3.6777 -2.0300 -1.3886 38 1 2.1954 -2.7705 -0.7108 39 1 3.7538 -0.8207 -4.7375 40 1 5.7101 0.4607 -5.5008 41 1 6.2459 2.6388 -4.4895 42 1 4.8239 3.5592 -2.7109 43 1 4.8543 3.8426 0.1648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601344543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:46 Heat of formation + Delta-G solvation = -62.730298 kcal Electronic energy + Delta-G solvation = -27392.272820 eV Core-core repulsion = 23756.359246 eV Total energy + Delta-G solvation = -3635.913575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.71322 -37.58414 -36.33653 -34.90795 -34.63578 -33.90275 -30.66666 -30.34248 -30.15379 -29.57642 -25.54745 -25.34985 -24.34264 -21.65635 -21.17958 -20.73513 -20.01748 -18.02800 -17.61227 -17.02069 -16.38788 -15.89408 -15.46248 -15.27732 -14.63893 -14.42372 -14.07693 -13.72564 -13.46919 -13.28115 -13.16248 -12.94543 -12.76180 -12.52087 -12.27620 -12.04561 -11.90350 -11.58427 -11.29555 -11.20729 -11.17099 -11.13800 -11.08859 -10.87624 -10.64737 -10.56638 -10.40911 -10.33926 -10.07527 -9.85569 -9.42621 -9.19809 -8.69713 -8.29538 -8.00715 -7.62304 -7.11369 -4.76892 1.49307 2.34196 2.68825 2.94866 3.03548 3.07029 3.74417 3.89991 4.34417 4.50909 4.71609 4.84831 4.89232 5.18122 5.32650 5.39358 5.53469 5.57461 5.67874 5.74956 5.87855 5.90993 5.94688 6.03222 6.10540 6.18283 6.21821 6.25533 6.38549 6.55165 6.58265 6.77599 6.84768 6.89775 6.93712 7.04613 7.12398 7.20610 7.33395 7.41669 7.50776 7.65912 7.79606 7.93561 8.33469 8.49265 8.64253 9.84153 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.007542 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.887295 B = 3711.748769 C = 4580.824128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.143 3.857 3 H 0.102 0.898 4 C -0.117 4.117 5 C -0.099 4.099 6 H 0.098 0.902 7 C 0.074 3.926 8 N -0.852 5.852 9 C 0.132 3.868 10 N -0.997 5.997 11 S 2.719 3.281 12 O -0.997 6.997 13 O -0.969 6.969 14 C -0.777 4.777 15 C -0.002 4.002 16 C -0.250 4.250 17 C -0.074 4.074 18 C -0.159 4.159 19 C 0.196 3.804 20 C -0.476 4.476 21 H 0.116 0.884 22 C 0.084 3.916 23 N -0.769 5.769 24 Si 0.895 3.105 25 H -0.248 1.248 26 H -0.267 1.267 27 H -0.268 1.268 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.338 0.662 36 H 0.343 0.657 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 -6.349 6.429 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.037 3.963 3 H 0.120 0.880 4 C -0.157 4.157 5 C -0.119 4.119 6 H 0.116 0.884 7 C -0.057 4.057 8 N -0.381 5.381 9 C 0.006 3.994 10 N -0.832 5.832 11 S 2.819 3.181 12 O -0.988 6.988 13 O -0.960 6.960 14 C -0.873 4.873 15 C -0.022 4.022 16 C -0.270 4.270 17 C -0.093 4.093 18 C -0.179 4.179 19 C 0.191 3.809 20 C -0.504 4.504 21 H 0.134 0.866 22 C -0.138 4.138 23 N -0.391 5.391 24 Si 0.718 3.282 25 H -0.171 1.171 26 H -0.192 1.192 27 H -0.192 1.192 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.740 -5.780 6.248 8.687 hybrid contribution -0.001 0.097 0.287 0.303 sum -1.741 -5.683 6.535 8.833 Atomic orbital electron populations 1.22516 0.95910 1.01781 1.04007 1.21542 0.93205 0.97942 0.83577 0.87986 1.22700 0.96733 0.98973 0.97259 1.22429 0.99004 0.96535 0.93914 0.88373 1.21737 0.90058 0.94761 0.99176 1.58704 1.36853 1.33562 1.08983 1.21838 0.94206 0.88003 0.95333 1.58516 1.66098 1.36655 1.21951 1.00526 0.74539 0.72579 0.70437 1.93435 1.88278 1.47472 1.69582 1.93437 1.52130 1.64815 1.85577 1.29893 1.27016 1.11442 1.18917 1.20247 0.92395 0.96664 0.92901 1.20475 1.01449 0.98740 1.06333 1.20876 0.97393 0.95216 0.95848 1.21361 0.97984 1.00585 0.97987 1.16968 0.89750 0.86774 0.87377 1.20458 0.98564 1.24346 1.06988 0.86615 1.25963 0.95299 0.95208 0.97322 1.69827 1.12586 1.29870 1.26828 0.86417 0.82341 0.80092 0.79356 1.17084 1.19234 1.19246 0.92045 0.89463 0.93126 0.90590 0.91261 0.90934 0.95479 0.85054 0.84467 0.91188 0.92581 0.87562 0.88709 0.88839 0.86634 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.12 37.16 0.34 -2.64 16 2 C 0.14 2.51 3.07 -66.95 -0.21 2.30 16 3 H 0.10 2.01 5.09 -51.94 -0.26 1.74 16 4 C -0.12 -1.64 5.94 -24.90 -0.15 -1.79 16 5 C -0.10 -1.41 3.25 -88.47 -0.29 -1.70 16 6 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 7 C 0.07 0.84 6.29 -3.82 -0.02 0.82 16 8 N -0.85 -9.43 9.62 -10.37 -0.10 -9.53 16 9 C 0.13 2.14 6.00 -2.53 -0.02 2.12 16 10 N -1.00 -19.01 3.33 -104.42 -0.35 -19.35 16 11 S 2.72 60.91 5.20 -107.50 -0.56 60.35 16 12 O -1.00 -23.29 16.65 -57.17 -0.95 -24.24 16 13 O -0.97 -23.18 12.91 -57.17 -0.74 -23.92 16 14 C -0.78 -18.84 5.96 -38.87 -0.23 -19.07 16 15 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 16 C -0.25 -5.53 10.05 -39.29 -0.39 -5.92 16 17 C -0.07 -1.68 10.02 -39.66 -0.40 -2.08 16 18 C -0.16 -3.93 8.67 -38.87 -0.34 -4.27 16 19 C 0.20 4.96 5.51 -106.82 -0.59 4.37 16 20 C -0.48 -11.58 6.05 -37.74 -0.23 -11.81 16 21 H 0.12 2.84 4.77 -52.48 -0.25 2.59 16 22 C 0.08 1.91 4.73 -17.35 -0.08 1.83 16 23 N -0.77 -17.78 11.34 55.55 0.63 -17.15 16 24 Si 0.90 17.14 29.60 -169.99 -5.03 12.11 16 25 H -0.25 -4.81 7.11 56.52 0.40 -4.41 16 26 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 27 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.63 5.86 -51.93 -0.30 1.32 16 30 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.28 7.96 -51.93 -0.41 -0.13 16 35 H 0.34 2.93 9.08 -39.29 -0.36 2.58 16 36 H 0.34 3.72 8.49 -39.29 -0.33 3.39 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 39 H 0.11 2.28 7.32 -52.48 -0.38 1.90 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.12 2.85 6.57 -52.48 -0.34 2.51 16 43 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -28.67 348.22 -10.81 -39.48 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.98 Total: 15.27 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: -2.98 Total: -38.26 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.18 Total: -46.03 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -1.69 Total: -48.16 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 16 Polarization: 60.91 SS G_CDS: -0.56 Total: 60.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.67 -10.81 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601344543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.251 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds