Wall clock time and date at job start Sat Apr 11 2020 01:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.99651 * 2 1 4 4 C 1.54342 * 109.98933 * 238.96299 * 2 1 3 5 5 C 1.55153 * 103.01938 * 218.66577 * 4 2 1 6 6 H 1.08996 * 111.00646 * 277.23559 * 5 4 2 7 7 C 1.52995 * 111.00271 * 153.38119 * 5 4 2 8 8 N 1.46899 * 109.47218 * 181.35238 * 7 5 4 9 9 C 1.54913 * 101.58073 * 35.30908 * 5 4 2 10 10 N 1.47021 * 109.88098 * 121.09921 * 2 1 3 11 11 S 1.65597 * 125.64785 * 298.39155 * 10 2 1 12 12 O 1.42098 * 106.40325 * 161.11897 * 11 10 2 13 13 O 1.42101 * 106.40133 * 28.20030 * 11 10 2 14 14 C 1.76199 * 107.21753 * 274.65967 * 11 10 2 15 15 C 1.37647 * 120.12723 * 116.86036 * 14 11 10 16 16 C 1.38616 * 120.24760 * 180.27460 * 15 14 11 17 17 C 1.38657 * 120.50117 * 359.76247 * 16 15 14 18 18 C 1.37599 * 120.24611 * 359.94825 * 17 16 15 19 19 C 1.40688 * 120.13100 * 296.59389 * 14 11 10 20 20 C 1.41398 * 120.24399 * 359.97438 * 19 14 11 21 21 H 1.08000 * 119.99890 * 324.03981 * 20 19 14 22 22 C 1.39942 * 120.00431 * 144.03222 * 20 19 14 23 23 N 1.30824 * 119.99842 * 150.92820 * 22 20 19 24 24 Si 1.86800 * 120.00036 * 330.94005 * 22 20 19 25 25 H 1.48510 * 109.46875 * 268.67618 * 24 22 20 26 26 H 1.48503 * 109.47287 * 28.66928 * 24 22 20 27 27 H 1.48498 * 109.47624 * 148.67598 * 24 22 20 28 28 H 1.08999 * 109.47341 * 298.90270 * 1 2 3 29 29 H 1.09008 * 109.47197 * 58.89933 * 1 2 3 30 30 H 1.09001 * 109.47457 * 178.89992 * 1 2 3 31 31 H 1.08997 * 110.84371 * 100.19903 * 4 2 1 32 32 H 1.08994 * 110.66660 * 337.04879 * 4 2 1 33 33 H 1.09001 * 109.47613 * 301.35247 * 7 5 4 34 34 H 1.09005 * 109.46947 * 61.35227 * 7 5 4 35 35 H 1.00897 * 111.00580 * 56.04657 * 8 7 5 36 36 H 1.00894 * 111.00396 * 180.02562 * 8 7 5 37 37 H 1.09006 * 110.36663 * 204.14799 * 9 5 4 38 38 H 1.08998 * 110.45985 * 81.87790 * 9 5 4 39 39 H 1.08001 * 119.87642 * 0.02562 * 15 14 11 40 40 H 1.07997 * 119.75101 * 179.73486 * 16 15 14 41 41 H 1.07999 * 119.87785 * 179.97438 * 17 16 15 42 42 H 1.08007 * 120.12617 * 180.02562 * 18 17 16 43 43 H 0.97008 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 4.1669 -0.8769 -0.6580 7 6 3.5590 -2.7777 -1.5165 8 7 4.7064 -3.4970 -0.9472 9 6 2.8098 -1.8826 0.7368 10 7 2.0300 -0.7141 1.1839 11 16 1.7564 -0.2817 2.7588 12 8 2.0178 -1.4372 3.5434 13 8 0.5122 0.4045 2.7762 14 6 2.9846 0.9041 3.1949 15 6 2.6172 2.1865 3.5342 16 6 3.5818 3.1229 3.8721 17 6 4.9250 2.7791 3.8774 18 6 5.3148 1.5014 3.5474 19 6 4.3442 0.5423 3.2031 20 6 4.7330 -0.7738 2.8623 21 1 4.1132 -1.6109 3.1476 22 6 5.9209 -0.9916 2.1553 23 7 6.5802 -2.1105 2.3132 24 14 6.5651 0.3152 0.9863 25 1 6.0323 0.0657 -0.3773 26 1 6.1261 1.6554 1.4516 27 1 8.0489 0.2636 0.9551 28 1 -0.3634 0.4967 0.8996 29 1 -0.3634 0.5309 -0.8800 30 1 -0.3634 -1.0275 -0.0197 31 1 2.3597 -0.0450 -2.0191 32 1 1.3066 -1.4405 -1.6226 33 1 2.6802 -3.4223 -1.4970 34 1 3.7807 -2.4967 -2.5460 35 1 4.5517 -3.7121 0.0263 36 1 4.9071 -4.3331 -1.4750 37 1 3.6655 -2.0414 1.3932 38 1 2.1805 -2.7723 0.7132 39 1 1.5738 2.4653 3.5332 40 1 3.2848 4.1280 4.1329 41 1 5.6681 3.5168 4.1420 42 1 6.3616 1.2356 3.5526 43 1 7.4039 -2.2613 1.8234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601344544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:50 Heat of formation + Delta-G solvation = -55.732873 kcal Electronic energy + Delta-G solvation = -27704.890920 eV Core-core repulsion = 24069.280777 eV Total energy + Delta-G solvation = -3635.610143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.72159 -37.78044 -36.37250 -34.90302 -34.53557 -33.85379 -30.82494 -30.48077 -30.19933 -29.99909 -25.61502 -25.16329 -24.22950 -21.94446 -21.15521 -20.79536 -19.94640 -18.05879 -17.69148 -17.07123 -16.45620 -16.03154 -15.34287 -15.16374 -14.66126 -14.28706 -14.18696 -13.65891 -13.63390 -13.35459 -13.28231 -12.91464 -12.84625 -12.57889 -12.21664 -12.15914 -12.10593 -11.88198 -11.36431 -11.28302 -11.17664 -11.10481 -11.01596 -10.82511 -10.76133 -10.49309 -10.33671 -10.22294 -10.06222 -9.97603 -9.32795 -9.26901 -8.45969 -8.35265 -8.13888 -7.66969 -7.20629 -4.80001 1.44364 2.15264 2.57154 2.99701 3.11636 3.16966 3.84221 3.85711 4.25914 4.62771 4.69794 4.83301 4.92288 5.13080 5.23177 5.43892 5.46128 5.60415 5.63442 5.78991 5.82474 5.87091 5.87869 5.98719 6.00165 6.07240 6.12406 6.23262 6.42231 6.48285 6.51148 6.68301 6.70792 6.72568 6.87324 6.98559 7.11293 7.16456 7.33807 7.36727 7.51462 7.63520 7.65953 7.88148 8.17226 8.37852 8.57250 9.76819 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.009088 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.770862 B = 3080.301704 C = 4592.946888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.152 3.848 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.104 4.104 6 H 0.095 0.905 7 C 0.077 3.923 8 N -0.850 5.850 9 C 0.116 3.884 10 N -0.997 5.997 11 S 2.721 3.279 12 O -0.968 6.968 13 O -0.991 6.991 14 C -0.772 4.772 15 C 0.009 3.991 16 C -0.255 4.255 17 C -0.057 4.057 18 C -0.202 4.202 19 C 0.165 3.835 20 C -0.477 4.477 21 H 0.127 0.873 22 C 0.107 3.893 23 N -0.759 5.759 24 Si 0.867 3.133 25 H -0.256 1.256 26 H -0.227 1.227 27 H -0.277 1.277 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.350 0.650 36 H 0.335 0.665 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 0.419 -8.877 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.124 4.124 6 H 0.113 0.887 7 C -0.055 4.055 8 N -0.380 5.380 9 C -0.009 4.009 10 N -0.833 5.833 11 S 2.820 3.180 12 O -0.959 6.959 13 O -0.982 6.982 14 C -0.866 4.866 15 C -0.010 4.010 16 C -0.275 4.275 17 C -0.076 4.076 18 C -0.222 4.222 19 C 0.160 3.840 20 C -0.503 4.503 21 H 0.145 0.855 22 C -0.119 4.119 23 N -0.379 5.379 24 Si 0.690 3.310 25 H -0.181 1.181 26 H -0.150 1.150 27 H -0.203 1.203 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.728 0.503 -8.461 9.260 hybrid contribution 0.536 0.200 -0.466 0.738 sum -3.191 0.702 -8.927 9.506 Atomic orbital electron populations 1.22538 0.95259 1.02419 1.03856 1.21166 0.93589 0.95838 0.84866 0.91102 1.22717 0.97305 0.99098 0.96641 1.22506 0.98463 0.96764 0.94648 0.88705 1.21671 0.91412 0.94224 0.98151 1.58625 1.41901 1.29463 1.08020 1.22335 0.95987 0.86592 0.95977 1.58504 1.66394 1.36988 1.21404 1.00532 0.73016 0.73567 0.70906 1.93498 1.86175 1.49473 1.66722 1.93402 1.42267 1.76261 1.86248 1.30026 1.12353 1.12119 1.32128 1.20353 0.98036 0.91404 0.91250 1.20488 0.93180 0.98676 1.15196 1.20838 0.95393 0.95420 0.95960 1.21233 0.98240 0.94607 1.08142 1.17011 0.89180 0.92208 0.85602 1.20129 1.05892 0.93506 1.30814 0.85548 1.26027 0.93938 0.96125 0.95811 1.69766 1.12198 1.25252 1.30657 0.86875 0.78239 0.84533 0.81379 1.18079 1.14956 1.20266 0.89255 0.92188 0.92681 0.90751 0.90942 0.95728 0.91336 0.83618 0.85285 0.86854 0.93371 0.87094 0.88332 0.88497 0.88083 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 9.06 37.16 0.34 -2.30 16 2 C 0.15 2.40 3.71 -66.94 -0.25 2.15 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.12 -1.56 5.95 -24.89 -0.15 -1.70 16 5 C -0.10 -1.59 3.30 -88.47 -0.29 -1.88 16 6 H 0.09 1.69 6.69 -51.93 -0.35 1.34 16 7 C 0.08 0.99 6.29 -3.83 -0.02 0.97 16 8 N -0.85 -11.72 9.62 -10.37 -0.10 -11.82 16 9 C 0.12 2.08 5.30 -2.53 -0.01 2.07 16 10 N -1.00 -18.80 3.30 -104.41 -0.34 -19.15 16 11 S 2.72 59.90 5.26 -107.50 -0.57 59.34 16 12 O -0.97 -24.02 15.36 -57.17 -0.88 -24.90 16 13 O -0.99 -21.84 14.10 -57.17 -0.81 -22.65 16 14 C -0.77 -17.99 5.96 -38.87 -0.23 -18.23 16 15 C 0.01 0.21 9.53 -39.66 -0.38 -0.17 16 16 C -0.26 -5.29 10.05 -39.29 -0.39 -5.68 16 17 C -0.06 -1.21 10.02 -39.66 -0.40 -1.61 16 18 C -0.20 -4.68 6.77 -38.87 -0.26 -4.94 16 19 C 0.16 4.00 4.85 -106.83 -0.52 3.48 16 20 C -0.48 -11.72 6.30 -37.74 -0.24 -11.95 16 21 H 0.13 3.35 4.99 -52.49 -0.26 3.09 16 22 C 0.11 2.48 4.78 -17.34 -0.08 2.39 16 23 N -0.76 -17.59 13.93 55.55 0.77 -16.82 16 24 Si 0.87 18.04 26.10 -169.99 -4.44 13.60 16 25 H -0.26 -5.16 6.15 56.52 0.35 -4.82 16 26 H -0.23 -4.86 5.40 56.52 0.31 -4.55 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 H 0.09 1.50 5.70 -51.93 -0.30 1.20 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 33 H 0.02 0.29 8.10 -51.93 -0.42 -0.13 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.35 5.26 8.16 -39.29 -0.32 4.94 16 36 H 0.34 3.72 9.08 -39.29 -0.36 3.37 16 37 H 0.11 2.33 4.32 -51.93 -0.22 2.11 16 38 H 0.05 0.80 8.01 -51.93 -0.42 0.38 16 39 H 0.11 2.22 7.33 -52.49 -0.38 1.84 16 40 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.10 2.25 6.43 -52.48 -0.34 1.91 16 43 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -28.09 339.85 -10.14 -38.23 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -6.01 Total: 16.45 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: -2.89 Total: -37.40 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.33 Total: -47.78 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.68 Total: -47.55 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -4.44 Total: 13.60 kcal Atomic # 16 Polarization: 59.90 SS G_CDS: -0.57 Total: 59.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.09 -10.14 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601344544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.503 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds