Wall clock time and date at job start Sat Apr 11 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.99651 * 2 1 4 4 C 1.54342 * 109.98933 * 238.96299 * 2 1 3 5 5 C 1.55153 * 103.01938 * 218.66577 * 4 2 1 6 6 H 1.08996 * 111.00646 * 277.23559 * 5 4 2 7 7 C 1.52995 * 111.00271 * 153.38119 * 5 4 2 8 8 N 1.46899 * 109.47218 * 181.35238 * 7 5 4 9 9 C 1.54913 * 101.58073 * 35.30908 * 5 4 2 10 10 N 1.47021 * 109.88098 * 121.09921 * 2 1 3 11 11 S 1.65597 * 125.64785 * 298.39155 * 10 2 1 12 12 O 1.42098 * 106.40325 * 161.11897 * 11 10 2 13 13 O 1.42101 * 106.40133 * 28.20030 * 11 10 2 14 14 C 1.76199 * 107.21753 * 274.65967 * 11 10 2 15 15 C 1.37647 * 120.12723 * 116.86036 * 14 11 10 16 16 C 1.38616 * 120.24760 * 180.27460 * 15 14 11 17 17 C 1.38657 * 120.50117 * 359.76247 * 16 15 14 18 18 C 1.37599 * 120.24611 * 359.94825 * 17 16 15 19 19 C 1.40688 * 120.13100 * 296.59389 * 14 11 10 20 20 C 1.41398 * 120.24399 * 359.97438 * 19 14 11 21 21 H 1.08000 * 119.99890 * 324.03981 * 20 19 14 22 22 C 1.39942 * 120.00431 * 144.03222 * 20 19 14 23 23 N 1.30824 * 119.99842 * 150.92820 * 22 20 19 24 24 Si 1.86800 * 120.00036 * 330.94005 * 22 20 19 25 25 H 1.48510 * 109.46875 * 268.67618 * 24 22 20 26 26 H 1.48503 * 109.47287 * 28.66928 * 24 22 20 27 27 H 1.48498 * 109.47624 * 148.67598 * 24 22 20 28 28 H 1.08999 * 109.47341 * 298.90270 * 1 2 3 29 29 H 1.09008 * 109.47197 * 58.89933 * 1 2 3 30 30 H 1.09001 * 109.47457 * 178.89992 * 1 2 3 31 31 H 1.08997 * 110.84371 * 100.19903 * 4 2 1 32 32 H 1.08994 * 110.66660 * 337.04879 * 4 2 1 33 33 H 1.09001 * 109.47613 * 301.35247 * 7 5 4 34 34 H 1.09005 * 109.46947 * 61.35227 * 7 5 4 35 35 H 1.00897 * 111.00580 * 56.04657 * 8 7 5 36 36 H 1.00894 * 111.00396 * 180.02562 * 8 7 5 37 37 H 1.09006 * 110.36663 * 204.14799 * 9 5 4 38 38 H 1.08998 * 110.45985 * 81.87790 * 9 5 4 39 39 H 1.08001 * 119.87642 * 0.02562 * 15 14 11 40 40 H 1.07997 * 119.75101 * 179.73486 * 16 15 14 41 41 H 1.07999 * 119.87785 * 179.97438 * 17 16 15 42 42 H 1.08007 * 120.12617 * 180.02562 * 18 17 16 43 43 H 0.97008 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 4.1669 -0.8769 -0.6580 7 6 3.5590 -2.7777 -1.5165 8 7 4.7064 -3.4970 -0.9472 9 6 2.8098 -1.8826 0.7368 10 7 2.0300 -0.7141 1.1839 11 16 1.7564 -0.2817 2.7588 12 8 2.0178 -1.4372 3.5434 13 8 0.5122 0.4045 2.7762 14 6 2.9846 0.9041 3.1949 15 6 2.6172 2.1865 3.5342 16 6 3.5818 3.1229 3.8721 17 6 4.9250 2.7791 3.8774 18 6 5.3148 1.5014 3.5474 19 6 4.3442 0.5423 3.2031 20 6 4.7330 -0.7738 2.8623 21 1 4.1132 -1.6109 3.1476 22 6 5.9209 -0.9916 2.1553 23 7 6.5802 -2.1105 2.3132 24 14 6.5651 0.3152 0.9863 25 1 6.0323 0.0657 -0.3773 26 1 6.1261 1.6554 1.4516 27 1 8.0489 0.2636 0.9551 28 1 -0.3634 0.4967 0.8996 29 1 -0.3634 0.5309 -0.8800 30 1 -0.3634 -1.0275 -0.0197 31 1 2.3597 -0.0450 -2.0191 32 1 1.3066 -1.4405 -1.6226 33 1 2.6802 -3.4223 -1.4970 34 1 3.7807 -2.4967 -2.5460 35 1 4.5517 -3.7121 0.0263 36 1 4.9071 -4.3331 -1.4750 37 1 3.6655 -2.0414 1.3932 38 1 2.1805 -2.7723 0.7132 39 1 1.5738 2.4653 3.5332 40 1 3.2848 4.1280 4.1329 41 1 5.6681 3.5168 4.1420 42 1 6.3616 1.2356 3.5526 43 1 7.4039 -2.2613 1.8234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601344544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:49 Heat of formation + Delta-G solvation = -75.903951 kcal Electronic energy + Delta-G solvation = -27705.765604 eV Core-core repulsion = 24069.280777 eV Total energy + Delta-G solvation = -3636.484827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99089 -39.49334 -38.14523 -36.71054 -35.66772 -35.60634 -32.46632 -31.87282 -31.72120 -31.38886 -27.25964 -26.44166 -25.45054 -23.64791 -22.88322 -22.08908 -21.14718 -19.70175 -19.43648 -18.60519 -18.04786 -17.42053 -17.03439 -16.50158 -16.14010 -15.92165 -15.51891 -15.23128 -15.03483 -14.89535 -14.63947 -14.52839 -14.24905 -13.89773 -13.83023 -13.56281 -13.44821 -13.30244 -13.00123 -12.99536 -12.82007 -12.68460 -12.48683 -12.38263 -12.16187 -12.11277 -11.70430 -11.56024 -11.44921 -11.39559 -11.07575 -10.97095 -9.92799 -9.72915 -9.49706 -9.42173 -8.96234 -6.60856 -0.23087 0.41121 0.83581 1.32260 1.43530 1.49154 2.16410 2.26287 2.52776 2.97861 3.31329 3.46654 3.59425 3.77322 3.98421 4.13347 4.24433 4.28246 4.36146 4.42940 4.50868 4.60763 4.65810 4.73548 4.74738 4.79631 4.86359 4.95614 4.98627 5.05769 5.20597 5.21979 5.26635 5.37679 5.45106 5.53742 5.54841 5.60128 5.75260 5.82038 5.89288 6.13534 6.30384 6.34575 6.60924 6.66634 6.77151 8.06226 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.009088 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.770862 B = 3080.301704 C = 4592.946888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.138 3.862 3 H 0.068 0.932 4 C -0.105 4.105 5 C -0.100 4.100 6 H 0.068 0.932 7 C 0.081 3.919 8 N -0.864 5.864 9 C 0.112 3.888 10 N -0.997 5.997 11 S 2.730 3.270 12 O -1.006 7.006 13 O -0.996 6.996 14 C -0.790 4.790 15 C -0.006 4.006 16 C -0.249 4.249 17 C -0.055 4.055 18 C -0.227 4.227 19 C 0.147 3.853 20 C -0.494 4.494 21 H 0.096 0.904 22 C 0.092 3.908 23 N -0.784 5.784 24 Si 0.909 3.091 25 H -0.247 1.247 26 H -0.234 1.234 27 H -0.271 1.271 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.339 0.661 36 H 0.350 0.650 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 1.991 -11.086 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.033 3.967 3 H 0.086 0.914 4 C -0.144 4.144 5 C -0.120 4.120 6 H 0.087 0.913 7 C -0.050 4.050 8 N -0.395 5.395 9 C -0.013 4.013 10 N -0.835 5.835 11 S 2.829 3.171 12 O -0.997 6.997 13 O -0.987 6.987 14 C -0.884 4.884 15 C -0.026 4.026 16 C -0.269 4.269 17 C -0.073 4.073 18 C -0.246 4.246 19 C 0.143 3.857 20 C -0.520 4.520 21 H 0.113 0.887 22 C -0.133 4.133 23 N -0.405 5.405 24 Si 0.730 3.270 25 H -0.172 1.172 26 H -0.157 1.157 27 H -0.196 1.196 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.106 2.073 -10.672 11.621 hybrid contribution 0.588 -0.234 0.278 0.691 sum -3.518 1.840 -10.394 11.126 Atomic orbital electron populations 1.22496 0.94114 1.02963 1.04130 1.21530 0.94599 0.95870 0.84723 0.91402 1.22728 0.96544 0.99456 0.95682 1.22443 0.98323 0.97808 0.93426 0.91315 1.21693 0.91835 0.93211 0.98304 1.58637 1.42658 1.30512 1.07674 1.22356 0.95093 0.86662 0.97152 1.58272 1.66607 1.37510 1.21108 1.00033 0.72726 0.72817 0.71518 1.93445 1.86613 1.50938 1.68680 1.93391 1.42300 1.76208 1.86767 1.30308 1.12375 1.13125 1.32567 1.20682 0.99305 0.91215 0.91363 1.20951 0.92802 0.99979 1.13167 1.21262 0.96543 0.95250 0.94291 1.21379 0.98162 0.95624 1.09483 1.17207 0.90006 0.92491 0.86015 1.19923 1.06536 0.92931 1.32653 0.88654 1.26397 0.93549 0.97266 0.96054 1.69763 1.12853 1.26296 1.31579 0.86254 0.78029 0.82390 0.80359 1.17163 1.15742 1.19556 0.91870 0.88839 0.92128 0.88289 0.88444 0.94019 0.89393 0.84809 0.83690 0.89933 0.92458 0.85671 0.84788 0.84906 0.88030 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.79 9.06 71.98 0.65 -4.14 16 2 C 0.14 4.14 3.71 45.35 0.17 4.31 16 3 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.10 -2.44 5.95 31.79 0.19 -2.25 16 5 C -0.10 -2.92 3.30 -9.40 -0.03 -2.95 16 6 H 0.07 2.39 6.69 -2.39 -0.02 2.37 16 7 C 0.08 1.90 6.29 86.30 0.54 2.45 16 8 N -0.86 -23.11 9.62 -186.72 -1.80 -24.90 16 9 C 0.11 4.07 5.30 86.86 0.46 4.53 16 10 N -1.00 -37.81 3.30 -484.24 -1.60 -39.41 16 11 S 2.73 123.46 5.26 -56.49 -0.30 123.17 16 12 O -1.01 -52.57 15.36 -128.00 -1.97 -54.54 16 13 O -1.00 -44.37 14.10 -128.00 -1.80 -46.18 16 14 C -0.79 -37.32 5.96 22.73 0.14 -37.19 16 15 C -0.01 -0.25 9.53 22.22 0.21 -0.04 16 16 C -0.25 -9.69 10.05 22.46 0.23 -9.46 16 17 C -0.06 -2.20 10.02 22.22 0.22 -1.97 16 18 C -0.23 -10.40 6.77 22.73 0.15 -10.24 16 19 C 0.15 7.30 4.85 -21.29 -0.10 7.19 16 20 C -0.49 -25.27 6.30 23.46 0.15 -25.12 16 21 H 0.10 5.42 4.99 -2.91 -0.01 5.41 16 22 C 0.09 4.34 4.78 85.26 0.41 4.74 16 23 N -0.78 -37.47 13.93 21.83 0.30 -37.16 16 24 Si 0.91 37.12 26.10 68.60 1.79 38.91 16 25 H -0.25 -9.63 6.15 99.48 0.61 -9.02 16 26 H -0.23 -9.80 5.40 99.48 0.54 -9.26 16 27 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 28 H 0.06 2.05 5.70 -2.39 -0.01 2.03 16 29 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.81 7.74 -2.39 -0.02 1.79 16 33 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.34 10.38 8.16 -89.70 -0.73 9.65 16 36 H 0.35 7.33 9.08 -89.70 -0.81 6.52 16 37 H 0.08 3.58 4.32 -2.38 -0.01 3.57 16 38 H 0.06 1.92 8.01 -2.39 -0.02 1.90 16 39 H 0.13 4.88 7.33 -2.91 -0.02 4.86 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.10 4.53 6.43 -2.91 -0.02 4.51 16 43 H 0.30 12.96 8.30 -92.70 -0.77 12.19 16 Total: -1.00 -62.65 339.85 -2.74 -65.39 By element: Atomic # 1 Polarization: 45.62 SS G_CDS: -0.75 Total: 44.86 kcal Atomic # 6 Polarization: -73.52 SS G_CDS: 3.38 Total: -70.14 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.09 Total: -101.47 kcal Atomic # 8 Polarization: -96.95 SS G_CDS: -3.77 Total: -100.72 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 1.79 Total: 38.91 kcal Atomic # 16 Polarization: 123.46 SS G_CDS: -0.30 Total: 123.17 kcal Total: -62.65 -2.74 -65.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601344544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -62.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds