Wall clock time and date at job start Sat Apr 11 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.52991 * 109.47338 * 294.46800 * 3 2 1 5 5 C 1.53007 * 109.46916 * 174.46757 * 3 2 1 6 6 N 1.46505 * 109.46851 * 54.47071 * 3 2 1 7 7 C 1.46502 * 119.99508 * 238.34354 * 6 3 2 8 8 C 1.50692 * 109.47191 * 269.99900 * 7 6 3 9 9 H 1.07998 * 120.00433 * 0.02562 * 8 7 6 10 10 C 1.37888 * 119.99741 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99778 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47009 * 60.00450 * 12 10 8 14 14 H 1.48498 * 109.46698 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47214 * 300.00096 * 12 10 8 16 16 C 1.34771 * 120.00153 * 58.34837 * 6 3 2 17 17 O 1.21559 * 120.00222 * 5.08261 * 16 6 3 18 18 C 1.47780 * 119.99991 * 185.08234 * 16 6 3 19 19 C 1.40097 * 120.54524 * 303.91311 * 18 16 6 20 20 C 1.38254 * 118.30387 * 180.27489 * 19 18 16 21 21 C 1.38553 * 119.29783 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 119.47942 * 179.97438 * 21 20 19 23 23 N 1.32044 * 121.04463 * 0.02562 * 21 20 19 24 24 C 1.31685 * 121.86078 * 0.02562 * 23 21 20 25 25 C 1.50706 * 119.70968 * 180.02562 * 24 23 21 26 26 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47315 * 299.99903 * 1 2 3 28 28 H 1.09003 * 109.47156 * 59.99942 * 1 2 3 29 29 H 1.09007 * 109.47227 * 240.00329 * 2 1 3 30 30 H 1.09003 * 109.47156 * 120.00058 * 2 1 3 31 31 H 1.09006 * 109.47486 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47411 * 300.00021 * 4 3 2 33 33 H 1.08996 * 109.47211 * 60.00445 * 4 3 2 34 34 H 1.09002 * 109.47169 * 306.46342 * 5 3 2 35 35 H 1.08991 * 109.47284 * 66.46619 * 5 3 2 36 36 H 1.09002 * 109.46903 * 186.46842 * 5 3 2 37 37 H 1.08995 * 109.47024 * 30.00869 * 7 6 3 38 38 H 1.09006 * 109.46698 * 150.00192 * 7 6 3 39 39 H 0.97004 * 120.00135 * 179.97438 * 11 10 8 40 40 H 1.08000 * 120.84509 * 0.25391 * 19 18 16 41 41 H 1.08002 * 120.34635 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.46908 * 273.43490 * 25 24 23 43 43 H 1.09002 * 109.47011 * 33.43413 * 25 24 23 44 44 H 1.08994 * 109.47196 * 153.43448 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6467 2.1225 -1.3129 5 6 3.5637 1.4447 0.1391 6 7 1.4459 2.1704 1.1241 7 6 0.6511 3.3762 0.8778 8 6 1.5516 4.5843 0.8987 9 1 2.6101 4.4659 1.0771 10 6 1.0240 5.8410 0.6900 11 7 -0.2650 5.9853 0.4733 12 14 2.1404 7.3386 0.7152 13 1 3.1740 7.2033 -0.3425 14 1 1.3344 8.5609 0.4669 15 1 2.7999 7.4421 2.0416 16 6 1.6307 1.7308 2.3847 17 8 2.3649 0.7857 2.5973 18 6 0.9406 2.3978 3.5084 19 6 1.0949 3.7737 3.7228 20 6 0.4326 4.3489 4.7914 21 6 -0.3555 3.5541 5.6080 22 17 -1.1887 4.2713 6.9515 23 7 -0.4821 2.2595 5.3811 24 6 0.1296 1.6667 4.3769 25 6 -0.0495 0.1857 4.1626 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.0096 3.1503 -1.3127 32 1 2.0886 1.5809 -2.1492 33 1 0.5612 2.1210 -1.4119 34 1 3.8495 0.8613 1.0144 35 1 4.0105 1.0049 -0.7524 36 1 3.9164 2.4696 0.2545 37 1 0.1676 3.3000 -0.0960 38 1 -0.1082 3.4755 1.6536 39 1 -0.6363 6.8695 0.3268 40 1 1.7157 4.3696 3.0702 41 1 0.5280 5.4068 4.9870 42 1 0.6796 -0.3590 4.7624 43 1 -1.0564 -0.1055 4.4618 44 1 0.0986 -0.0494 3.1086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189932527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:03 Heat of formation + Delta-G solvation = -26.052556 kcal Electronic energy + Delta-G solvation = -27168.120038 eV Core-core repulsion = 23531.753223 eV Total energy + Delta-G solvation = -3636.366815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02340 -40.59583 -37.98027 -37.62223 -35.70872 -34.17725 -33.84509 -32.87927 -31.23390 -29.51934 -28.79872 -27.92498 -25.58038 -24.82085 -24.01705 -23.44788 -22.05189 -19.49987 -18.68334 -18.24227 -17.86652 -17.52732 -17.01698 -16.40208 -16.13399 -15.79522 -15.59614 -15.24999 -14.80314 -14.42256 -14.34869 -14.21557 -13.94119 -13.92585 -13.45809 -13.41950 -13.30499 -13.19849 -12.90051 -12.78110 -12.76239 -12.61302 -12.46453 -12.38371 -12.23705 -12.17590 -11.98837 -11.72756 -11.55771 -11.41653 -10.93770 -10.86053 -10.55135 -10.35460 -9.86941 -9.35418 -8.16533 -6.28918 -0.39091 0.11621 0.65158 1.42683 1.46598 1.51262 1.71492 2.20612 2.41600 2.58482 3.12551 3.23583 3.55134 3.71268 3.88383 3.96969 4.10324 4.11317 4.23773 4.41149 4.45328 4.62676 4.66494 4.68020 4.71727 4.84328 4.86817 4.88736 4.99996 5.01913 5.05435 5.10605 5.12811 5.16918 5.26707 5.30113 5.39348 5.43736 5.51578 5.59431 5.72133 5.98026 6.10374 6.52554 6.60785 6.85951 7.29703 7.42651 8.87697 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.006725 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.467629 B = 4162.574254 C = 6359.591454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.169 3.831 4 C -0.142 4.142 5 C -0.151 4.151 6 N -0.573 5.573 7 C 0.249 3.751 8 C -0.534 4.534 9 H 0.056 0.944 10 C 0.036 3.964 11 N -0.910 5.910 12 Si 0.938 3.062 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.569 3.431 17 O -0.564 6.564 18 C -0.184 4.184 19 C -0.016 4.016 20 C -0.168 4.168 21 C 0.183 3.817 22 Cl -0.019 7.019 23 N -0.498 5.498 24 C 0.175 3.825 25 C -0.093 4.093 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.013 0.987 39 H 0.266 0.734 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 -6.852 2.505 7.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.086 3.914 4 C -0.199 4.199 5 C -0.209 4.209 6 N -0.303 5.303 7 C 0.128 3.872 8 C -0.572 4.572 9 H 0.074 0.926 10 C -0.166 4.166 11 N -0.548 5.548 12 Si 0.764 3.236 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.192 1.192 16 C 0.356 3.644 17 O -0.446 6.446 18 C -0.189 4.189 19 C -0.042 4.042 20 C -0.189 4.189 21 C 0.019 3.981 22 Cl 0.009 6.991 23 N -0.210 5.210 24 C 0.036 3.964 25 C -0.150 4.150 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.500 -7.621 3.196 8.280 hybrid contribution 0.681 2.063 -0.375 2.204 sum 1.181 -5.559 2.821 6.344 Atomic orbital electron populations 1.21710 0.95689 1.01596 1.01064 1.21877 0.96278 0.94998 1.03251 1.20537 0.93107 0.91850 0.85954 1.22044 1.01572 1.01042 0.95288 1.22119 0.94576 1.01359 1.02802 1.48256 1.50300 1.27048 1.04683 1.19171 0.90299 0.80728 0.96976 1.21472 0.94538 0.91524 1.49649 0.92571 1.25458 0.95758 1.00915 0.94503 1.69994 1.12491 1.24375 1.47960 0.85911 0.79172 0.79379 0.79147 1.20019 1.21309 1.19153 1.17866 0.80993 0.82666 0.82831 1.90638 1.39211 1.29935 1.84791 1.20992 1.02981 0.95451 0.99453 1.22510 0.94717 0.93301 0.93637 1.21929 0.98894 1.02432 0.95607 1.21927 0.94383 0.90278 0.91518 1.98379 1.76899 1.80607 1.43188 1.66831 1.23535 1.10460 1.20213 1.21451 0.89707 0.97666 0.87528 1.20754 1.04221 0.86949 1.03093 0.91390 0.95084 0.92534 0.89285 0.91550 0.92726 0.89703 0.92608 0.92247 0.90117 0.94152 0.94779 0.96900 0.92446 0.81917 0.81966 0.88842 0.88936 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.45 71.98 0.68 -3.31 16 2 C -0.13 -3.59 4.64 30.59 0.14 -3.45 16 3 C 0.17 5.57 0.73 3.60 0.00 5.57 16 4 C -0.14 -4.48 6.98 71.98 0.50 -3.98 16 5 C -0.15 -4.82 8.32 71.98 0.60 -4.22 16 6 N -0.57 -22.04 1.50 -782.53 -1.17 -23.21 16 7 C 0.25 10.96 4.07 85.63 0.35 11.31 16 8 C -0.53 -24.82 5.86 25.60 0.15 -24.67 16 9 H 0.06 2.66 7.78 -2.91 -0.02 2.64 16 10 C 0.04 1.71 5.46 84.66 0.46 2.17 16 11 N -0.91 -46.79 13.29 21.45 0.28 -46.50 16 12 Si 0.94 38.73 29.54 68.60 2.03 40.76 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 16 C 0.57 22.34 5.09 86.77 0.44 22.79 16 17 O -0.56 -22.74 12.51 -3.90 -0.05 -22.79 16 18 C -0.18 -7.11 4.65 -19.99 -0.09 -7.20 16 19 C -0.02 -0.62 7.94 22.72 0.18 -0.44 16 20 C -0.17 -5.79 9.86 22.35 0.22 -5.57 16 21 C 0.18 6.20 7.27 84.74 0.62 6.81 16 22 Cl -0.02 -0.54 29.10 -2.72 -0.08 -0.62 16 23 N -0.50 -17.65 10.24 -173.78 -1.78 -19.43 16 24 C 0.17 6.24 6.82 42.89 0.29 6.53 16 25 C -0.09 -2.74 9.45 71.24 0.67 -2.07 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.03 0.99 6.92 -2.39 -0.02 0.97 16 28 H 0.06 1.54 6.58 -2.39 -0.02 1.52 16 29 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.07 2.10 6.39 -2.39 -0.02 2.09 16 31 H 0.05 2.00 7.13 -2.38 -0.02 1.99 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.82 5.39 -2.39 -0.01 1.81 16 34 H 0.06 2.06 6.33 -2.39 -0.02 2.04 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.03 1.59 5.74 -2.39 -0.01 1.58 16 38 H 0.01 0.63 6.12 -2.38 -0.01 0.62 16 39 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 40 H 0.16 6.79 5.24 -2.91 -0.02 6.78 16 41 H 0.16 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.07 2.23 6.45 -2.39 -0.02 2.21 16 Total: -1.00 -53.18 357.51 5.47 -47.71 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 1.02 Total: 23.82 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.22 Total: 0.27 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -2.67 Total: -89.15 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -53.18 5.47 -47.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189932527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.659 kcal (2) G-P(sol) polarization free energy of solvation -53.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds