Wall clock time and date at job start Sat Apr 11 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47014 * 2 1 4 4 C 1.53006 * 109.46947 * 172.29092 * 3 2 1 5 5 C 1.52996 * 109.46664 * 214.82175 * 4 3 2 6 6 C 1.53004 * 109.46924 * 292.28391 * 3 2 1 7 7 N 1.46498 * 109.46809 * 174.40775 * 6 3 2 8 8 C 1.46505 * 120.00368 * 276.64110 * 7 6 3 9 9 C 1.50700 * 109.47116 * 274.45411 * 8 7 6 10 10 H 1.07996 * 120.00015 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99707 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00374 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99738 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47054 * 90.00107 * 13 11 9 15 15 H 1.48505 * 109.46803 * 210.00280 * 13 11 9 16 16 H 1.48500 * 109.46985 * 329.99620 * 13 11 9 17 17 C 1.34781 * 120.00078 * 96.64701 * 7 6 3 18 18 O 1.21512 * 120.00015 * 186.75527 * 17 7 6 19 19 C 1.48172 * 119.99336 * 6.75088 * 17 7 6 20 20 C 1.39259 * 119.71111 * 172.23594 * 19 17 7 21 21 C 1.38752 * 119.04136 * 179.69712 * 20 19 17 22 22 Cl 1.73600 * 120.77221 * 180.25206 * 21 20 19 23 23 C 1.38772 * 118.45595 * 0.28103 * 21 20 19 24 24 C 1.38493 * 119.33920 * 359.97438 * 23 21 20 25 25 N 1.31548 * 120.91689 * 0.02562 * 24 23 21 26 26 H 1.09000 * 109.46770 * 185.93951 * 1 2 3 27 27 H 1.09005 * 109.46481 * 305.93314 * 1 2 3 28 28 H 1.08994 * 109.47541 * 65.93047 * 1 2 3 29 29 H 1.09004 * 109.46429 * 239.99837 * 2 1 3 30 30 H 1.08998 * 109.47184 * 120.00274 * 2 1 3 31 31 H 1.08998 * 109.47287 * 52.28370 * 3 2 1 32 32 H 1.09001 * 109.46771 * 334.81801 * 4 3 2 33 33 H 1.09000 * 109.47358 * 94.82426 * 4 3 2 34 34 H 1.09004 * 109.47123 * 176.49047 * 5 4 3 35 35 H 1.09004 * 109.47638 * 296.48985 * 5 4 3 36 36 H 1.09000 * 109.47482 * 56.49714 * 5 4 3 37 37 H 1.09005 * 109.46841 * 54.41497 * 6 3 2 38 38 H 1.08994 * 109.47483 * 294.41082 * 6 3 2 39 39 H 1.08997 * 109.46761 * 34.45195 * 8 7 6 40 40 H 1.08999 * 109.47132 * 154.45560 * 8 7 6 41 41 H 0.96995 * 120.00450 * 179.97438 * 12 11 9 42 42 H 1.07996 * 120.48386 * 359.97438 * 20 19 17 43 43 H 1.07998 * 120.32742 * 179.97438 * 23 21 20 44 44 H 1.08000 * 119.54477 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5578 1.4468 0.1935 5 6 3.9628 2.6681 1.0213 6 6 1.6943 2.1056 -1.3348 7 7 2.0623 3.5228 -1.2858 8 6 1.1472 4.4970 -0.6860 9 6 0.1502 4.9526 -1.7203 10 1 0.1937 4.5558 -2.7237 11 6 -0.8180 5.8752 -1.3850 12 7 -0.8712 6.3580 -0.1629 13 14 -2.0542 6.4394 -2.6668 14 1 -3.2428 5.5498 -2.6334 15 1 -2.4711 7.8339 -2.3722 16 1 -1.4313 6.3831 -4.0137 17 6 3.2428 3.9304 -1.7925 18 8 3.6031 5.0812 -1.6435 19 6 4.1013 2.9750 -2.5313 20 6 5.2382 3.4357 -3.1904 21 6 6.0356 2.5280 -3.8726 22 17 7.4665 3.0522 -4.7042 23 6 5.6624 1.1914 -3.8753 24 6 4.5150 0.8059 -3.2022 25 7 3.7775 1.6882 -2.5634 26 1 -0.3633 -1.0222 0.1063 27 1 -0.3632 0.6031 0.8322 28 1 -0.3634 0.4191 -0.9382 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5684 1.9946 0.8129 32 1 3.8602 0.5383 0.7144 33 1 4.0480 1.4884 -0.7792 34 1 5.0356 2.6382 1.2121 35 1 3.7166 3.5771 0.4724 36 1 3.4249 2.6591 1.9693 37 1 0.6238 2.0144 -1.5193 38 1 2.2444 1.6149 -2.1376 39 1 0.6197 4.0343 0.1480 40 1 1.7149 5.3550 -0.3259 41 1 -1.5521 7.0073 0.0729 42 1 5.4980 4.4837 -3.1672 43 1 6.2607 0.4592 -4.3970 44 1 4.2217 -0.2335 -3.2018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264108141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:13:11 Heat of formation + Delta-G solvation = -9.081730 kcal Electronic energy + Delta-G solvation = -26572.990544 eV Core-core repulsion = 22937.359640 eV Total energy + Delta-G solvation = -3635.630904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15675 -40.06159 -38.37077 -37.78304 -35.88045 -34.55353 -33.46023 -32.81376 -32.58284 -29.80058 -28.56388 -26.23243 -25.63544 -24.70844 -24.13274 -22.80032 -21.21236 -20.91176 -18.67055 -18.51995 -18.13529 -17.24767 -16.94565 -16.91005 -16.26874 -16.13037 -15.44256 -15.24007 -15.11787 -14.82927 -14.60143 -14.35910 -14.28398 -14.11204 -13.63633 -13.41600 -13.38148 -13.30723 -13.07166 -12.98011 -12.62981 -12.52089 -12.34886 -12.25592 -12.17479 -11.92333 -11.73007 -11.51684 -11.33176 -11.19563 -11.07108 -10.66165 -10.47334 -10.33091 -9.83982 -9.25744 -8.23550 -6.39864 -0.51008 -0.09384 0.79975 1.34669 1.37745 1.48134 1.75983 2.19106 2.38905 2.69611 3.03838 3.06525 3.57297 3.71133 3.80717 3.95496 4.07779 4.14832 4.26515 4.43189 4.47968 4.59447 4.60492 4.62340 4.66065 4.79690 4.83593 4.96998 5.00595 5.09830 5.12473 5.17972 5.19085 5.25019 5.30416 5.40414 5.45444 5.53230 5.57884 5.60805 5.78478 5.97685 6.03542 6.52077 6.68647 6.79223 7.21412 7.37444 8.83400 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.004730 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.764049 B = 5918.762864 C = 7383.283776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.124 4.124 5 C -0.155 4.155 6 C 0.062 3.938 7 N -0.567 5.567 8 C 0.264 3.736 9 C -0.545 4.545 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.969 3.031 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.271 1.271 17 C 0.550 3.450 18 O -0.593 6.593 19 C 0.088 3.912 20 C -0.120 4.120 21 C -0.001 4.001 22 Cl -0.039 7.039 23 C -0.121 4.121 24 C 0.112 3.888 25 N -0.442 5.442 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.174 0.826 39 H 0.014 0.986 40 H -0.001 1.001 41 H 0.267 0.733 42 H 0.137 0.863 43 H 0.193 0.807 44 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.617 -19.785 -7.283 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.110 4.110 4 C -0.161 4.161 5 C -0.212 4.212 6 C -0.060 4.060 7 N -0.294 5.294 8 C 0.143 3.857 9 C -0.583 4.583 10 H 0.072 0.928 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.793 3.207 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.196 1.196 17 C 0.337 3.663 18 O -0.475 6.475 19 C -0.047 4.047 20 C -0.142 4.142 21 C -0.035 4.035 22 Cl -0.010 7.010 23 C -0.141 4.141 24 C -0.046 4.046 25 N -0.155 5.155 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.189 0.811 39 H 0.032 0.968 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.155 0.845 43 H 0.210 0.790 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 13.043 -19.244 -6.700 24.193 hybrid contribution -0.191 1.895 -0.328 1.932 sum 12.852 -17.349 -7.028 22.706 Atomic orbital electron populations 1.21839 0.96729 1.01694 1.01009 1.21455 0.95029 0.93899 1.03310 1.21468 0.96021 0.97088 0.96413 1.21970 0.95455 0.97068 1.01563 1.21906 1.00523 0.99012 0.99796 1.23379 1.01238 0.79057 1.02308 1.48005 1.16255 1.10097 1.54994 1.18708 0.87120 0.86967 0.92901 1.21662 1.14098 1.25204 0.97350 0.92818 1.25872 0.99649 0.95722 0.97712 1.70066 1.35546 1.30852 1.20221 0.85394 0.78796 0.77808 0.78693 1.18792 1.20474 1.19578 1.18324 0.81861 0.86511 0.79591 1.90712 1.73944 1.21042 1.61756 1.20847 0.94199 0.91334 0.98281 1.21893 0.93815 1.01910 0.96616 1.21315 0.90561 0.94884 0.96769 1.98410 1.35648 1.90936 1.75971 1.22753 0.98467 0.93966 0.98924 1.23979 0.89431 1.01241 0.89965 1.67499 1.29390 1.01138 1.17452 0.90952 0.94914 0.93445 0.89305 0.90956 0.95271 0.90376 0.89199 0.92580 0.95880 0.93750 0.93418 0.81126 0.96831 0.98278 0.92363 0.84500 0.78988 0.75947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.59 71.98 0.69 -3.08 16 2 C -0.10 -2.18 5.26 30.60 0.16 -2.02 16 3 C -0.09 -2.77 2.12 -10.79 -0.02 -2.79 16 4 C -0.12 -3.42 5.18 30.59 0.16 -3.26 16 5 C -0.15 -5.27 9.51 71.98 0.68 -4.58 16 6 C 0.06 2.21 4.77 86.38 0.41 2.62 16 7 N -0.57 -26.13 1.66 -829.18 -1.38 -27.50 16 8 C 0.26 15.15 5.28 85.63 0.45 15.60 16 9 C -0.54 -32.59 9.39 25.60 0.24 -32.35 16 10 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 11 C 0.01 0.57 5.46 84.65 0.46 1.03 16 12 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 13 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.55 24.84 5.14 86.88 0.45 25.28 16 18 O -0.59 -32.09 15.81 -3.75 -0.06 -32.15 16 19 C 0.09 2.88 5.80 41.90 0.24 3.12 16 20 C -0.12 -3.44 9.45 22.64 0.21 -3.23 16 21 C 0.00 -0.01 6.37 22.52 0.14 0.13 16 22 Cl -0.04 -0.69 29.02 -2.72 -0.08 -0.77 16 23 C -0.12 -1.47 9.94 22.46 0.22 -1.25 16 24 C 0.11 1.48 11.08 84.80 0.94 2.42 16 25 N -0.44 -10.61 3.31 -184.98 -0.61 -11.22 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 0.91 8.13 -2.38 -0.02 0.89 16 28 H 0.05 1.25 6.82 -2.39 -0.02 1.24 16 29 H 0.09 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.07 1.39 7.93 -2.39 -0.02 1.37 16 31 H 0.03 1.10 7.48 -2.39 -0.02 1.08 16 32 H 0.08 1.72 7.63 -2.39 -0.02 1.70 16 33 H 0.09 2.39 3.42 -2.43 -0.01 2.38 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.02 0.96 5.30 -2.39 -0.01 0.95 16 36 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 37 H 0.05 1.86 6.54 -2.38 -0.02 1.84 16 38 H 0.17 5.16 3.92 -86.58 -0.34 4.82 16 39 H 0.01 0.82 7.90 -2.39 -0.02 0.80 16 40 H 0.00 -0.06 7.22 -2.39 -0.02 -0.08 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.14 4.39 7.66 -2.91 -0.02 4.37 16 43 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 44 H 0.22 0.70 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -78.26 362.90 6.31 -71.95 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.68 Total: 11.59 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.45 Total: -2.36 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -1.70 Total: -96.17 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.06 Total: -32.15 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -78.26 6.31 -71.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264108141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.871 kcal (2) G-P(sol) polarization free energy of solvation -78.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds