Wall clock time and date at job start Sat Apr 11 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 N 1.46498 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.36899 * 120.00231 * 274.44202 * 4 3 2 6 6 H 1.07997 * 120.00095 * 132.53930 * 5 4 3 7 7 C 1.39026 * 119.99955 * 312.54171 * 5 4 3 8 8 N 1.31378 * 119.99893 * 3.61433 * 7 5 4 9 9 Si 1.86801 * 120.00051 * 183.61636 * 7 5 4 10 10 H 1.48502 * 109.47217 * 89.99818 * 9 7 5 11 11 H 1.48496 * 109.46865 * 210.00033 * 9 7 5 12 12 H 1.48506 * 109.46908 * 329.99521 * 9 7 5 13 13 C 1.34784 * 119.99805 * 94.44449 * 4 3 2 14 14 O 1.21609 * 119.99914 * 4.32722 * 13 4 3 15 15 C 1.47559 * 119.99675 * 184.33152 * 13 4 3 16 16 C 1.41578 * 126.44666 * 174.56655 * 15 13 4 17 17 C 1.35335 * 105.55827 * 179.71895 * 16 15 13 18 18 N 1.35878 * 107.13287 * 0.39996 * 17 16 15 19 19 C 1.40128 * 124.95186 * 179.83486 * 18 17 16 20 20 C 1.38994 * 119.99436 * 359.97438 * 19 18 17 21 21 C 1.38210 * 120.23529 * 180.29757 * 20 19 18 22 22 C 1.38020 * 120.22822 * 359.72402 * 21 20 19 23 23 C 1.39637 * 119.98050 * 359.97438 * 22 21 20 24 24 C 1.43209 * 120.11623 * 179.97438 * 23 22 21 25 25 N 9.37874 * 145.86364 * 78.46068 * 2 1 3 26 26 C 1.38565 * 119.99297 * 179.72031 * 19 18 17 27 27 N 1.28476 * 110.09648 * 359.57515 * 18 17 16 28 28 H 1.08997 * 109.47227 * 59.99341 * 1 2 3 29 29 H 1.08997 * 109.47603 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46604 * 299.99797 * 1 2 3 31 31 H 1.09006 * 109.46604 * 240.00203 * 2 1 3 32 32 H 1.08997 * 109.47227 * 120.00659 * 2 1 3 33 33 H 1.08993 * 109.46853 * 60.00260 * 3 2 1 34 34 H 1.09003 * 109.46903 * 300.00117 * 3 2 1 35 35 H 0.96998 * 120.00164 * 180.02562 * 8 7 5 36 36 H 1.07997 * 127.22151 * 359.97164 * 16 15 13 37 37 H 1.08000 * 126.43721 * 180.26109 * 17 16 15 38 38 H 1.08000 * 119.88034 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.88627 * 179.70281 * 21 20 19 40 40 H 1.07994 * 120.00734 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.11701 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.3503 1.1811 6 1 5.0077 0.6515 1.2782 7 6 3.8332 2.1565 2.2560 8 7 2.7944 2.9553 2.1617 9 14 4.8307 2.1039 3.8346 10 1 5.9223 3.1082 3.7640 11 1 3.9481 2.4124 4.9882 12 1 5.4145 0.7493 4.0063 13 6 4.1784 1.5330 -1.1647 14 8 3.5725 1.6939 -2.2067 15 6 5.6509 1.4368 -1.1746 16 6 6.4840 1.4057 -2.3188 17 6 7.7487 1.3197 -1.8448 18 7 7.6668 1.2917 -0.4887 19 6 8.7627 1.2027 0.3800 20 6 10.0526 1.1348 -0.1333 21 6 11.1367 1.0408 0.7188 22 6 10.9464 1.0193 2.0856 23 6 9.6549 1.0934 2.6115 24 6 9.4541 1.0708 4.0293 25 7 9.2928 1.0528 5.1566 26 6 8.5606 1.1878 1.7507 27 7 6.4386 1.3642 -0.1190 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.5456 3.5180 2.9115 36 1 6.1754 1.4467 -3.3529 37 1 8.6531 1.2784 -2.4337 38 1 10.2080 1.1512 -1.2020 39 1 12.1363 0.9835 0.3137 40 1 11.7960 0.9453 2.7481 41 1 7.5594 1.2450 2.1515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281743957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:14:28 Heat of formation + Delta-G solvation = 98.696368 kcal Electronic energy + Delta-G solvation = -26731.869351 eV Core-core repulsion = 22999.804562 eV Total energy + Delta-G solvation = -3732.064789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.69233 -40.56926 -40.07915 -37.64029 -37.04503 -34.77096 -34.36768 -33.17916 -32.69917 -31.41050 -30.42859 -27.73581 -26.81264 -25.27928 -24.85599 -22.94415 -22.40454 -21.99216 -20.92685 -20.19254 -19.07357 -17.74984 -17.64120 -17.24164 -17.01058 -16.56156 -16.47410 -16.19671 -15.64090 -15.45672 -15.13265 -15.00901 -14.80010 -14.55212 -14.39393 -14.11943 -13.99423 -13.83400 -13.44250 -13.30511 -13.25712 -13.07751 -12.74911 -12.65530 -12.58930 -12.38935 -12.22386 -12.00694 -11.49951 -11.45601 -11.07187 -11.02965 -10.63336 -10.14073 -10.07771 -9.46256 -9.19201 -8.25476 -6.14851 -0.43938 -0.13355 0.95423 1.26797 1.30076 1.33177 1.36221 1.37123 1.62755 1.86053 2.17581 2.62225 2.67479 2.78708 2.95305 3.07616 3.54665 3.78464 3.89346 4.00568 4.12572 4.19161 4.27738 4.33466 4.36362 4.54725 4.62379 4.77325 4.79041 4.84347 4.92050 4.99063 5.10117 5.10918 5.19431 5.23856 5.25640 5.39403 5.43445 5.54790 5.62771 5.74850 6.08902 6.15711 6.26879 6.50027 6.99117 7.16398 7.54253 7.94448 8.70804 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.004911 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.155548 B = 5700.523910 C = 7590.554287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.099 3.901 4 N -0.437 5.437 5 C -0.308 4.308 6 H 0.098 0.902 7 C 0.014 3.986 8 N -0.898 5.898 9 Si 0.957 3.043 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.532 3.468 14 O -0.625 6.625 15 C -0.010 4.010 16 C -0.200 4.200 17 C 0.003 3.997 18 N -0.258 5.258 19 C 0.122 3.878 20 C -0.081 4.081 21 C -0.073 4.073 22 C -0.055 4.055 23 C -0.023 4.023 24 C 0.271 3.729 25 N -0.460 5.460 26 C -0.094 4.094 27 N -0.257 5.257 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.038 0.962 35 H 0.270 0.730 36 H 0.170 0.830 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.199 0.801 40 H 0.173 0.827 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.690 -4.909 -5.227 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C -0.024 4.024 4 N -0.154 5.154 5 C -0.437 4.437 6 H 0.115 0.885 7 C -0.188 4.188 8 N -0.538 5.538 9 Si 0.783 3.217 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.190 1.190 13 C 0.321 3.679 14 O -0.512 6.512 15 C -0.170 4.170 16 C -0.227 4.227 17 C -0.135 4.135 18 N -0.040 5.040 19 C 0.032 3.968 20 C -0.102 4.102 21 C -0.091 4.091 22 C -0.075 4.075 23 C -0.027 4.027 24 C -0.044 4.044 25 N -0.135 5.135 26 C -0.117 4.117 27 N -0.089 5.089 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.188 0.812 37 H 0.259 0.741 38 H 0.199 0.801 39 H 0.216 0.784 40 H 0.190 0.810 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.014 -4.756 -2.620 19.774 hybrid contribution -0.691 0.369 -0.078 0.787 sum 18.323 -4.388 -2.698 19.033 Atomic orbital electron populations 1.21593 0.93394 1.02314 1.01839 1.21683 0.97393 0.96708 1.00110 1.21816 0.80877 0.96843 1.02878 1.43580 1.05626 1.61078 1.05073 1.19702 1.14689 1.20548 0.88776 0.88477 1.26025 0.96613 0.94374 1.01809 1.69674 1.25672 1.25431 1.33007 0.85479 0.78751 0.78855 0.78663 1.20501 1.20278 1.19001 1.17870 0.85522 0.80308 0.84245 1.90565 1.69564 1.57612 1.33485 1.22112 0.94212 1.09246 0.91473 1.22060 0.91642 1.09347 0.99672 1.23647 1.00989 1.06041 0.82851 1.43434 1.04023 1.50536 1.06036 1.17785 0.85858 1.05164 0.88004 1.21637 0.87675 0.97085 1.03795 1.21510 1.00525 0.96167 0.90908 1.21717 0.93932 0.94453 0.97443 1.15827 0.95320 1.08713 0.82836 1.26144 0.92591 0.92550 0.93075 1.81376 1.08307 1.10386 1.13468 1.20844 0.99063 0.99469 0.92317 1.74344 0.89559 1.18532 1.26424 0.92622 0.90916 0.92650 0.94312 0.93090 0.87328 0.94384 0.91965 0.81216 0.74084 0.80129 0.78404 0.80997 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.91 71.98 0.71 -3.90 16 2 C -0.12 -5.26 6.24 30.59 0.19 -5.07 16 3 C 0.10 5.12 5.14 86.38 0.44 5.56 16 4 N -0.44 -24.14 2.51 -639.12 -1.60 -25.74 16 5 C -0.31 -16.90 7.70 84.09 0.65 -16.25 16 6 H 0.10 5.33 6.22 -2.91 -0.02 5.31 16 7 C 0.01 0.73 5.40 84.95 0.46 1.19 16 8 N -0.90 -50.61 10.84 21.68 0.23 -50.38 16 9 Si 0.96 44.87 29.55 68.60 2.03 46.90 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 C 0.53 28.93 7.63 86.70 0.66 29.59 16 14 O -0.63 -35.81 16.42 -4.06 -0.07 -35.88 16 15 C -0.01 -0.45 6.86 42.42 0.29 -0.16 16 16 C -0.20 -6.88 10.80 22.42 0.24 -6.64 16 17 C 0.00 0.07 10.78 83.40 0.90 0.97 16 18 N -0.26 -8.08 3.52 -187.40 -0.66 -8.74 16 19 C 0.12 2.91 6.65 38.07 0.25 3.17 16 20 C -0.08 -0.87 9.43 22.44 0.21 -0.66 16 21 C -0.07 -0.40 10.02 22.21 0.22 -0.17 16 22 C -0.05 -0.57 9.75 22.56 0.22 -0.35 16 23 C -0.02 -0.50 5.73 -21.38 -0.12 -0.62 16 24 C 0.27 7.52 15.34 88.30 1.35 8.88 16 25 N -0.46 -15.18 18.56 19.04 0.35 -14.83 16 26 C -0.09 -2.67 9.30 22.66 0.21 -2.46 16 27 N -0.26 -11.08 8.04 -48.19 -0.39 -11.47 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.11 5.98 5.27 -2.39 -0.01 5.97 16 34 H 0.04 2.04 7.24 -2.39 -0.02 2.02 16 35 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.17 5.28 8.06 -2.91 -0.02 5.26 16 37 H 0.24 2.40 6.95 -2.91 -0.02 2.38 16 38 H 0.18 0.51 6.63 -2.91 -0.02 0.49 16 39 H 0.20 -0.81 8.06 -2.91 -0.02 -0.83 16 40 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.11 4.01 7.64 -2.91 -0.02 3.98 16 Total: -1.00 -82.10 360.58 7.87 -74.23 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.07 Total: 12.81 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.90 Total: 13.09 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -2.06 Total: -111.15 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.07 Total: -35.88 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -82.10 7.87 -74.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281743957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.930 kcal (2) G-P(sol) polarization free energy of solvation -82.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds