Wall clock time and date at job start Sat Apr 11 2020 01:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 H 1.08995 * 109.47018 * 304.89698 * 3 2 1 5 5 C 1.50702 * 109.47022 * 184.89648 * 3 2 1 6 6 H 1.07993 * 120.00487 * 245.44930 * 5 3 2 7 7 C 1.37876 * 120.00023 * 65.45914 * 5 3 2 8 8 N 1.31523 * 120.00096 * 9.46155 * 7 5 3 9 9 Si 1.86793 * 120.00419 * 189.46912 * 7 5 3 10 10 H 1.48500 * 109.47320 * 84.98715 * 9 7 5 11 11 H 1.48503 * 109.47627 * 204.99225 * 9 7 5 12 12 H 1.48505 * 109.46964 * 324.99003 * 9 7 5 13 13 N 1.46504 * 109.47005 * 64.89937 * 3 2 1 14 14 C 1.34772 * 119.99869 * 274.99777 * 13 3 2 15 15 O 1.21578 * 120.00105 * 0.02562 * 14 13 3 16 16 C 1.47668 * 119.99539 * 180.02562 * 14 13 3 17 17 C 1.41541 * 126.43957 * 180.02562 * 16 14 13 18 18 C 1.35350 * 105.55557 * 180.20365 * 17 16 14 19 19 N 1.35858 * 107.12526 * 359.64511 * 18 17 16 20 20 C 1.40143 * 124.95840 * 180.11033 * 19 18 17 21 21 C 1.38981 * 119.99205 * 5.27505 * 20 19 18 22 22 C 1.38218 * 120.23439 * 179.97438 * 21 20 19 23 23 C 1.38011 * 120.22907 * 359.97438 * 22 21 20 24 24 C 1.39646 * 119.98298 * 0.02562 * 23 22 21 25 25 C 1.43198 * 120.12036 * 179.97438 * 24 23 22 26 26 N 9.54989 * 110.21641 * 65.18174 * 2 1 3 27 27 C 1.38565 * 119.99130 * 185.00438 * 20 19 18 28 28 N 1.28479 * 110.07984 * 0.36967 * 19 18 17 29 29 H 1.09004 * 109.47206 * 60.00146 * 1 2 3 30 30 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47161 * 300.00068 * 1 2 3 32 32 H 1.09004 * 109.47214 * 240.00008 * 2 1 3 33 33 H 1.09004 * 109.47205 * 120.00643 * 2 1 3 34 34 H 0.96991 * 120.00483 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99767 * 95.00221 * 13 3 2 36 36 H 1.07994 * 127.22135 * 359.93819 * 17 16 14 37 37 H 1.07997 * 126.43910 * 179.77187 * 18 17 16 38 38 H 1.07995 * 119.88663 * 0.02562 * 21 20 19 39 39 H 1.08007 * 119.89032 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.01318 * 180.02562 * 23 22 21 41 41 H 1.07993 * 120.11434 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9809 -0.8428 5 6 3.5421 1.4441 -0.1213 6 1 4.1494 1.8089 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7114 -2.3326 9 14 5.9919 0.7325 -1.3289 10 1 6.3289 -0.6069 -0.7834 11 1 6.4620 0.8273 -2.7343 12 1 6.6563 1.7807 -0.5131 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3421 2.6321 0.4275 16 6 0.0405 3.3266 2.6242 17 6 -1.1961 3.9615 2.8909 18 6 -1.1011 4.4224 4.1600 19 7 0.1267 4.0703 4.6227 20 6 0.6161 4.3613 5.9032 21 6 -0.2120 4.9632 6.8432 22 6 0.2653 5.2519 8.1078 23 6 1.5674 4.9441 8.4461 24 6 2.4076 4.3392 7.5089 25 6 3.7593 4.0191 7.8565 26 7 4.8301 3.7615 8.1339 27 6 1.9238 4.0438 6.2337 28 7 0.7758 3.4363 3.7130 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8311 0.3845 -3.1428 35 1 2.2687 2.1242 1.9978 36 1 -2.0371 4.0613 2.2208 37 1 -1.8597 4.9660 4.7034 38 1 -1.2323 5.2054 6.5850 39 1 -0.3832 5.7193 8.8341 40 1 1.9366 5.1709 9.4354 41 1 2.5672 3.5718 5.5060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282393695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:14:37 Heat of formation + Delta-G solvation = 103.713893 kcal Electronic energy + Delta-G solvation = -25733.219661 eV Core-core repulsion = 22001.372448 eV Total energy + Delta-G solvation = -3731.847213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.96496 -39.91058 -38.71994 -36.85399 -35.04418 -33.92694 -32.37429 -32.15469 -31.16521 -30.61381 -29.62854 -27.02839 -24.74415 -24.68438 -23.01980 -22.05426 -21.71288 -20.04244 -19.54696 -19.22741 -17.75233 -16.93344 -16.76175 -16.27924 -15.91862 -15.68190 -15.26507 -14.54972 -14.52595 -14.26614 -14.22599 -13.86372 -13.69672 -13.40985 -13.21394 -12.99593 -12.82789 -12.64175 -12.31490 -12.04957 -11.99597 -11.45892 -11.32530 -11.00941 -10.91368 -10.76258 -10.39139 -10.33225 -10.17570 -9.68962 -9.64399 -9.34618 -9.22979 -9.08143 -8.58236 -8.45041 -7.82421 -6.11891 -4.16752 0.05969 0.43270 1.77557 2.04659 2.16682 2.35754 2.57740 3.28349 3.34316 3.34912 3.34999 3.36917 3.97439 3.99930 4.10825 4.29250 4.37524 4.41931 4.47890 4.59917 4.81995 4.93180 5.21359 5.23607 5.40559 5.48571 5.61686 5.65610 5.66113 5.77817 5.98986 6.37392 6.37606 6.42514 6.62165 6.71728 7.02735 7.07900 7.18526 7.33360 7.41459 7.61306 7.71791 7.79534 7.90001 8.09577 8.69631 8.81240 9.11127 9.48718 10.96400 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003280 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.331763 B = 8535.417978 C =10533.632065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.059 0.941 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.689 5.689 14 C 0.584 3.416 15 O -0.537 6.537 16 C 0.019 3.981 17 C -0.168 4.168 18 C -0.022 4.022 19 N -0.248 5.248 20 C 0.150 3.850 21 C -0.104 4.104 22 C -0.094 4.094 23 C -0.078 4.078 24 C -0.001 4.001 25 C 0.251 3.749 26 N -0.402 5.402 27 C -0.066 4.066 28 N -0.264 5.264 29 H 0.052 0.948 30 H 0.024 0.976 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.394 0.606 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 9.987 21.724 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.077 0.923 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.336 5.336 14 C 0.366 3.634 15 O -0.413 6.413 16 C -0.144 4.144 17 C -0.195 4.195 18 C -0.161 4.161 19 N -0.030 5.030 20 C 0.059 3.941 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.099 4.099 24 C -0.005 4.005 25 C -0.065 4.065 26 N -0.076 5.076 27 C -0.088 4.088 28 N -0.095 5.095 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.227 0.773 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.324 9.200 21.711 25.006 hybrid contribution 0.071 0.137 -0.176 0.234 sum -8.253 9.337 21.536 24.881 Atomic orbital electron populations 1.21852 0.97989 0.98266 1.01546 1.21858 0.93031 0.99739 1.01290 1.18875 0.94508 0.88990 0.81005 0.92323 1.21174 0.90503 1.43980 1.01843 0.92034 1.24867 0.98436 0.95135 0.94948 1.69982 1.35729 1.43804 1.02132 0.86538 0.85054 0.78761 0.77227 1.20413 1.21166 1.19905 1.46420 1.14035 1.54427 1.18757 1.16850 0.83233 0.79056 0.84289 1.90781 1.51942 1.60380 1.38227 1.22714 0.93701 1.03808 0.94195 1.21917 0.99391 1.02383 0.95787 1.22961 0.89746 1.06684 0.96700 1.42683 1.11268 1.39723 1.09325 1.17384 0.93650 1.00939 0.82176 1.21110 1.00102 0.98554 0.92735 1.20922 0.95296 0.99395 0.95640 1.21298 0.93253 0.96211 0.99092 1.15719 0.86922 1.03485 0.94416 1.25461 0.92622 0.94191 0.94197 1.81291 1.11290 1.07737 1.07292 1.21002 0.94051 0.98006 0.95789 1.73619 1.23810 1.14130 0.97983 0.92841 0.95698 0.94034 0.90095 0.94631 0.92556 0.77263 0.81373 0.79820 0.84013 0.83605 0.84170 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.12 -2.91 5.50 -26.74 -0.15 -3.06 16 3 C 0.27 6.81 2.11 -69.08 -0.15 6.67 16 4 H 0.06 1.72 7.52 -51.93 -0.39 1.33 16 5 C -0.54 -14.43 8.66 -34.44 -0.30 -14.73 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.91 5.16 -17.82 -0.09 1.81 16 8 N -0.88 -25.00 12.16 55.43 0.67 -24.32 16 9 Si 0.90 20.99 29.55 -169.99 -5.02 15.97 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 13 N -0.69 -15.03 5.02 -55.94 -0.28 -15.31 16 14 C 0.58 12.14 6.39 -12.41 -0.08 12.06 16 15 O -0.54 -12.52 14.05 5.30 0.07 -12.45 16 16 C 0.02 0.32 7.13 -82.75 -0.59 -0.27 16 17 C -0.17 -2.22 10.80 -39.35 -0.42 -2.64 16 18 C -0.02 -0.22 10.77 -16.80 -0.18 -0.40 16 19 N -0.25 -2.88 3.52 -10.59 -0.04 -2.92 16 20 C 0.15 1.32 6.65 -83.66 -0.56 0.76 16 21 C -0.10 -0.52 9.43 -39.31 -0.37 -0.89 16 22 C -0.09 -0.32 10.02 -39.67 -0.40 -0.72 16 23 C -0.08 -0.35 9.75 -39.14 -0.38 -0.74 16 24 C 0.00 -0.01 5.73 -106.96 -0.61 -0.62 16 25 C 0.25 2.49 15.33 -22.48 -0.34 2.14 16 26 N -0.40 -5.05 18.54 41.83 0.78 -4.28 16 27 C -0.07 -0.60 9.30 -38.97 -0.36 -0.97 16 28 N -0.26 -4.00 10.85 33.42 0.36 -3.63 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 32 H 0.08 2.13 6.80 -51.93 -0.35 1.78 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.39 7.95 8.25 -40.82 -0.34 7.61 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.18 0.91 6.98 -52.49 -0.37 0.54 16 38 H 0.14 0.37 6.65 -52.49 -0.35 0.02 16 39 H 0.15 0.06 8.06 -52.48 -0.42 -0.36 16 40 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 41 H 0.15 1.62 7.65 -52.49 -0.40 1.22 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -33.34 360.06 -7.25 -40.59 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.55 Total: 5.29 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.67 Total: -4.36 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 1.49 Total: -50.47 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.34 -7.25 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282393695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.299 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds