Wall clock time and date at job start Sat Apr 11 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 H 1.08995 * 109.47018 * 304.89698 * 3 2 1 5 5 C 1.50702 * 109.47022 * 184.89648 * 3 2 1 6 6 H 1.07993 * 120.00487 * 245.44930 * 5 3 2 7 7 C 1.37876 * 120.00023 * 65.45914 * 5 3 2 8 8 N 1.31523 * 120.00096 * 9.46155 * 7 5 3 9 9 Si 1.86793 * 120.00419 * 189.46912 * 7 5 3 10 10 H 1.48500 * 109.47320 * 84.98715 * 9 7 5 11 11 H 1.48503 * 109.47627 * 204.99225 * 9 7 5 12 12 H 1.48505 * 109.46964 * 324.99003 * 9 7 5 13 13 N 1.46504 * 109.47005 * 64.89937 * 3 2 1 14 14 C 1.34772 * 119.99869 * 274.99777 * 13 3 2 15 15 O 1.21578 * 120.00105 * 0.02562 * 14 13 3 16 16 C 1.47668 * 119.99539 * 180.02562 * 14 13 3 17 17 C 1.41541 * 126.43957 * 180.02562 * 16 14 13 18 18 C 1.35350 * 105.55557 * 180.20365 * 17 16 14 19 19 N 1.35858 * 107.12526 * 359.64511 * 18 17 16 20 20 C 1.40143 * 124.95840 * 180.11033 * 19 18 17 21 21 C 1.38981 * 119.99205 * 5.27505 * 20 19 18 22 22 C 1.38218 * 120.23439 * 179.97438 * 21 20 19 23 23 C 1.38011 * 120.22907 * 359.97438 * 22 21 20 24 24 C 1.39646 * 119.98298 * 0.02562 * 23 22 21 25 25 C 1.43198 * 120.12036 * 179.97438 * 24 23 22 26 26 N 9.54989 * 110.21641 * 65.18174 * 2 1 3 27 27 C 1.38565 * 119.99130 * 185.00438 * 20 19 18 28 28 N 1.28479 * 110.07984 * 0.36967 * 19 18 17 29 29 H 1.09004 * 109.47206 * 60.00146 * 1 2 3 30 30 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47161 * 300.00068 * 1 2 3 32 32 H 1.09004 * 109.47214 * 240.00008 * 2 1 3 33 33 H 1.09004 * 109.47205 * 120.00643 * 2 1 3 34 34 H 0.96991 * 120.00483 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99767 * 95.00221 * 13 3 2 36 36 H 1.07994 * 127.22135 * 359.93819 * 17 16 14 37 37 H 1.07997 * 126.43910 * 179.77187 * 18 17 16 38 38 H 1.07995 * 119.88663 * 0.02562 * 21 20 19 39 39 H 1.08007 * 119.89032 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.01318 * 180.02562 * 23 22 21 41 41 H 1.07993 * 120.11434 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9809 -0.8428 5 6 3.5421 1.4441 -0.1213 6 1 4.1494 1.8089 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7114 -2.3326 9 14 5.9919 0.7325 -1.3289 10 1 6.3289 -0.6069 -0.7834 11 1 6.4620 0.8273 -2.7343 12 1 6.6563 1.7807 -0.5131 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3421 2.6321 0.4275 16 6 0.0405 3.3266 2.6242 17 6 -1.1961 3.9615 2.8909 18 6 -1.1011 4.4224 4.1600 19 7 0.1267 4.0703 4.6227 20 6 0.6161 4.3613 5.9032 21 6 -0.2120 4.9632 6.8432 22 6 0.2653 5.2519 8.1078 23 6 1.5674 4.9441 8.4461 24 6 2.4076 4.3392 7.5089 25 6 3.7593 4.0191 7.8565 26 7 4.8301 3.7615 8.1339 27 6 1.9238 4.0438 6.2337 28 7 0.7758 3.4363 3.7130 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8311 0.3845 -3.1428 35 1 2.2687 2.1242 1.9978 36 1 -2.0371 4.0613 2.2208 37 1 -1.8597 4.9660 4.7034 38 1 -1.2323 5.2054 6.5850 39 1 -0.3832 5.7193 8.8341 40 1 1.9366 5.1709 9.4354 41 1 2.5672 3.5718 5.5060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282393695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:14:36 Heat of formation + Delta-G solvation = 82.152513 kcal Electronic energy + Delta-G solvation = -25734.154632 eV Core-core repulsion = 22001.372448 eV Total energy + Delta-G solvation = -3732.782185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.90934 -40.67997 -40.21130 -37.67392 -36.93840 -34.78696 -34.28421 -32.95397 -32.72455 -31.56002 -30.51930 -28.95501 -25.95943 -25.31547 -24.74925 -23.09687 -22.53534 -21.69812 -20.95129 -20.23316 -19.13494 -18.02241 -17.39174 -17.32528 -17.25897 -17.10743 -16.44927 -16.15760 -16.01657 -15.17400 -15.08426 -14.93036 -14.69438 -14.60659 -14.40599 -14.11277 -13.96189 -13.81891 -13.51710 -13.38729 -13.29532 -12.95752 -12.76271 -12.65444 -12.52814 -12.22976 -12.12291 -11.91586 -11.66273 -11.18609 -11.13312 -10.96305 -10.55785 -10.27902 -10.12444 -9.72439 -9.31954 -8.22314 -6.35022 -0.46596 -0.17655 0.76709 1.25878 1.26965 1.41010 1.42233 1.51669 1.57828 1.88553 2.32894 2.48780 2.58167 2.71004 2.78196 3.08843 3.32533 3.72949 3.83666 3.97210 4.00386 4.15567 4.29783 4.45471 4.49907 4.52372 4.66314 4.70540 4.75022 4.79367 5.03389 5.04511 5.17148 5.21348 5.24489 5.36298 5.40312 5.48158 5.57557 5.57835 5.72636 5.86150 6.00275 6.03756 6.33300 6.70165 6.71632 6.99881 7.28644 7.46743 8.86507 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003280 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.331763 B = 8535.417978 C =10533.632065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.277 3.723 4 H 0.010 0.990 5 C -0.554 4.554 6 H 0.064 0.936 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.693 5.693 14 C 0.583 3.417 15 O -0.571 6.571 16 C -0.023 4.023 17 C -0.189 4.189 18 C 0.011 3.989 19 N -0.238 5.238 20 C 0.113 3.887 21 C -0.079 4.079 22 C -0.078 4.078 23 C -0.055 4.055 24 C -0.019 4.019 25 C 0.275 3.725 26 N -0.460 5.460 27 C -0.081 4.081 28 N -0.285 5.285 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.401 0.599 36 H 0.174 0.826 37 H 0.246 0.754 38 H 0.180 0.820 39 H 0.194 0.806 40 H 0.168 0.832 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 11.809 25.823 30.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.592 4.592 6 H 0.082 0.918 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.341 5.341 14 C 0.368 3.632 15 O -0.450 6.450 16 C -0.183 4.183 17 C -0.216 4.216 18 C -0.128 4.128 19 N -0.021 5.021 20 C 0.023 3.977 21 C -0.100 4.100 22 C -0.096 4.096 23 C -0.076 4.076 24 C -0.023 4.023 25 C -0.040 4.040 26 N -0.136 5.136 27 C -0.104 4.104 28 N -0.119 5.119 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.192 0.808 37 H 0.262 0.738 38 H 0.197 0.803 39 H 0.211 0.789 40 H 0.186 0.814 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.189 11.029 25.844 29.890 hybrid contribution 0.569 -0.294 -1.233 1.390 sum -9.620 10.734 24.611 28.521 Atomic orbital electron populations 1.21682 0.96365 0.99594 1.00556 1.21705 0.94409 0.98713 1.00343 1.18469 0.93777 0.89276 0.81125 0.97168 1.21491 0.91384 1.44152 1.02160 0.91760 1.25708 1.03073 0.94655 0.94451 1.70112 1.37700 1.44464 1.02689 0.85471 0.79339 0.78934 0.77287 1.19527 1.20785 1.19367 1.46218 1.15050 1.55103 1.17735 1.17343 0.82117 0.78141 0.85565 1.90737 1.52654 1.61572 1.40072 1.22116 0.96065 1.06757 0.93382 1.22113 0.98410 1.03355 0.97770 1.23733 0.89453 1.04295 0.95306 1.42987 1.11591 1.37930 1.09560 1.17749 0.94255 1.03870 0.81829 1.21622 1.00961 0.95405 0.91980 1.21475 0.94857 0.97645 0.95578 1.21739 0.93302 0.93271 0.99244 1.15765 0.86179 1.05631 0.94728 1.25902 0.92863 0.92602 0.92651 1.81301 1.12982 1.09992 1.09289 1.20841 0.94578 0.98895 0.96064 1.73522 1.24686 1.15298 0.98363 0.94916 0.93027 0.93893 0.92539 0.93760 0.92417 0.76507 0.80814 0.73823 0.80318 0.78936 0.81435 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.11 -5.72 5.50 30.59 0.17 -5.55 16 3 C 0.28 14.97 2.11 44.24 0.09 15.06 16 4 H 0.01 0.66 7.52 -2.39 -0.02 0.64 16 5 C -0.55 -31.06 8.66 25.60 0.22 -30.84 16 6 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.24 5.16 84.65 0.44 1.67 16 8 N -0.91 -53.93 12.16 21.45 0.26 -53.67 16 9 Si 0.97 43.99 29.55 68.60 2.03 46.02 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.69 -32.23 5.02 -449.15 -2.25 -34.48 16 14 C 0.58 25.78 6.39 86.73 0.55 26.33 16 15 O -0.57 -28.44 14.05 -3.96 -0.06 -28.50 16 16 C -0.02 -0.79 7.13 42.45 0.30 -0.49 16 17 C -0.19 -4.82 10.80 22.42 0.24 -4.58 16 18 C 0.01 0.18 10.77 83.40 0.90 1.08 16 19 N -0.24 -5.05 3.52 -187.41 -0.66 -5.71 16 20 C 0.11 1.65 6.65 38.07 0.25 1.90 16 21 C -0.08 -0.31 9.43 22.44 0.21 -0.10 16 22 C -0.08 0.01 10.02 22.21 0.22 0.23 16 23 C -0.05 -0.24 9.75 22.56 0.22 -0.02 16 24 C -0.02 -0.25 5.73 -21.38 -0.12 -0.37 16 25 C 0.27 5.39 15.33 88.33 1.35 6.75 16 26 N -0.46 -11.91 18.54 19.00 0.35 -11.55 16 27 C -0.08 -1.43 9.30 22.67 0.21 -1.22 16 28 N -0.28 -8.77 10.85 -48.17 -0.52 -9.29 16 29 H 0.03 1.60 7.84 -2.38 -0.02 1.58 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.94 5.65 -2.39 -0.01 1.92 16 32 H 0.06 3.13 6.80 -2.38 -0.02 3.11 16 33 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.40 17.29 8.25 -92.70 -0.76 16.52 16 36 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.25 0.66 6.98 -2.91 -0.02 0.64 16 38 H 0.18 -0.58 6.65 -2.91 -0.02 -0.60 16 39 H 0.19 -1.59 8.06 -2.91 -0.02 -1.61 16 40 H 0.17 -0.11 8.06 -2.91 -0.02 -0.14 16 41 H 0.12 2.85 7.65 -2.91 -0.02 2.83 16 Total: -1.00 -81.56 360.06 5.35 -76.21 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.33 Total: 16.24 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.88 Total: 4.73 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -2.82 Total: -114.70 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.06 Total: -28.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -81.56 5.35 -76.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282393695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.359 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds