Wall clock time and date at job start Sat Apr 11 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00352 * 5 4 3 7 7 H 1.08004 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47210 * 60.00704 * 10 8 6 12 12 H 1.48510 * 109.47028 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47297 * 300.00395 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21593 * 119.99953 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00097 * 0.26801 * 14 4 3 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 4 18 18 H 1.09008 * 109.46846 * 325.00097 * 17 16 14 19 19 C 1.50698 * 109.47318 * 205.00474 * 17 16 14 20 20 C 1.38233 * 119.99963 * 319.72582 * 19 17 16 21 21 C 1.38238 * 119.99983 * 179.79576 * 20 19 17 22 22 C 1.38231 * 119.99771 * 0.43087 * 21 20 19 23 23 C 1.38236 * 120.00300 * 359.82069 * 22 21 20 24 24 C 1.38235 * 119.99885 * 359.97280 * 23 22 21 25 25 C 1.52996 * 109.47098 * 85.00044 * 17 16 14 26 26 F 1.39905 * 109.47067 * 300.00056 * 25 17 16 27 27 F 1.39894 * 109.47275 * 60.00227 * 25 17 16 28 28 H 1.07995 * 120.00480 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 32 32 H 1.09004 * 109.47163 * 245.00280 * 3 2 1 33 33 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 34 34 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 35 35 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 36 36 H 0.97000 * 120.00112 * 359.73180 * 16 14 4 37 37 H 1.07998 * 120.00035 * 359.97438 * 20 19 17 38 38 H 1.08000 * 119.99876 * 180.27576 * 21 20 19 39 39 H 1.08006 * 120.00082 * 179.83660 * 22 21 20 40 40 H 1.08003 * 120.00105 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99742 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47061 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5185 4.0667 3.6082 9 7 1.9591 3.4660 4.6357 10 14 2.8730 5.8995 3.6773 11 1 2.1381 6.5873 2.5855 12 1 2.4320 6.4399 4.9884 13 1 4.3311 6.1282 3.5132 14 6 4.2497 0.8661 0.9824 15 8 5.0219 0.8887 1.9214 16 7 4.6515 0.3808 -0.2090 17 6 6.0185 -0.1200 -0.3727 18 1 6.6996 0.4786 0.2325 19 6 6.4184 -0.0240 -1.8224 20 6 5.5078 -0.3409 -2.8130 21 6 5.8733 -0.2488 -4.1430 22 6 7.1522 0.1515 -4.4821 23 6 8.0645 0.4633 -3.4915 24 6 7.6976 0.3754 -2.1616 25 6 6.0842 -1.5802 0.0790 26 9 5.7130 -1.6692 1.4250 27 9 5.2102 -2.3484 -0.6975 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4888 1.6967 2.5459 34 1 3.0989 1.3603 3.2260 35 1 1.7302 3.9747 5.4293 36 1 4.0356 0.3631 -0.9581 37 1 4.5099 -0.6575 -2.5479 38 1 5.1605 -0.4921 -4.9170 39 1 7.4387 0.2209 -5.5212 40 1 9.0638 0.7757 -3.7565 41 1 8.4105 0.6186 -1.3876 42 1 7.1014 -1.9527 -0.0423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296924173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:28 Heat of formation + Delta-G solvation = -73.464387 kcal Electronic energy + Delta-G solvation = -28111.511295 eV Core-core repulsion = 23921.291869 eV Total energy + Delta-G solvation = -4190.219426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.72715 -46.71050 -39.99992 -39.03743 -35.87723 -34.98775 -33.11084 -32.15395 -31.42431 -31.00756 -28.49485 -27.21830 -25.41753 -23.84820 -23.05008 -22.55350 -21.01424 -19.96767 -19.35556 -17.98242 -17.37181 -16.88231 -16.79342 -16.58976 -16.40535 -15.75590 -15.19699 -15.00542 -14.61922 -14.29318 -14.24651 -13.81384 -13.61936 -13.54730 -13.18080 -13.09483 -12.94996 -12.90056 -12.58333 -12.29690 -12.11179 -11.72161 -11.52113 -11.28127 -11.23875 -11.15394 -11.01367 -10.86503 -10.52533 -10.13550 -9.62843 -9.30165 -9.17256 -9.16421 -9.04915 -8.77598 -8.37433 -7.59971 -5.98198 -4.02641 0.99952 1.15120 2.46197 3.19791 3.34940 3.39375 3.42808 3.46334 3.86070 4.02919 4.17996 4.42039 4.44473 4.58922 4.63187 4.75852 4.85992 4.91743 5.10507 5.22232 5.24485 5.31441 5.35457 5.43811 5.51954 5.59224 5.67520 5.79014 6.01723 6.17534 6.20427 6.25203 6.26153 6.69594 6.72430 6.78590 6.84455 6.98814 7.44159 7.61355 7.74735 8.00818 8.30463 8.69924 8.98333 9.37055 9.62758 11.09650 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.003920 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.613794 B = 7141.207520 C = 7594.603308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.139 3.861 4 N -0.605 5.605 5 C 0.263 3.737 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.703 3.297 15 O -0.572 6.572 16 N -0.748 5.748 17 C 0.162 3.838 18 H 0.123 0.877 19 C -0.098 4.098 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.100 4.100 25 C 0.252 3.748 26 F -0.185 7.185 27 F -0.205 7.205 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.395 0.605 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 -9.842 -19.147 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.015 3.985 4 N -0.339 5.339 5 C 0.144 3.856 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.404 3.596 15 O -0.448 6.448 16 N -0.408 5.408 17 C 0.054 3.946 18 H 0.141 0.859 19 C -0.099 4.099 20 C -0.115 4.115 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.119 4.119 25 C 0.196 3.804 26 F -0.166 7.166 27 F -0.187 7.187 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.232 0.768 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.946 -9.760 -18.159 22.094 hybrid contribution -0.303 0.895 -0.249 0.977 sum 7.644 -8.865 -18.408 21.815 Atomic orbital electron populations 1.23801 0.95796 1.01718 1.00565 1.23480 0.96504 0.99079 0.99883 1.20484 0.93153 0.95495 0.89390 1.47493 1.08960 1.63527 1.13969 1.19184 0.95127 0.93410 0.77863 1.21432 1.40330 0.93480 1.01174 0.92602 1.24916 0.95161 0.98610 0.95352 1.69930 1.42131 1.36162 1.05165 0.86580 0.78762 0.85092 0.77065 1.20350 1.21224 1.20264 1.15888 0.83183 0.78249 0.82271 1.90911 1.52913 1.61921 1.39008 1.45309 1.12415 1.69516 1.13543 1.20562 0.87307 0.92859 0.93906 0.85910 1.19661 0.94989 1.01805 0.93447 1.21021 0.99476 0.98410 0.92630 1.21149 0.96607 0.99832 0.96035 1.21224 0.93755 0.98810 0.99462 1.21139 0.99808 1.00208 0.92630 1.21060 0.95363 0.98532 0.96902 1.22395 0.92071 0.91817 0.74088 1.93095 1.93230 1.96752 1.33540 1.92940 1.73165 1.77509 1.75079 0.88805 0.88286 0.87786 0.89241 0.91744 0.94963 0.93756 0.92729 0.76834 0.85757 0.85734 0.85962 0.85709 0.85366 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.02 0.42 -2.02 16 2 C -0.17 -2.54 9.85 -36.02 -0.35 -2.89 16 3 C 0.14 2.34 5.61 -5.19 -0.03 2.31 16 4 N -0.61 -13.22 2.44 -182.19 -0.44 -13.66 16 5 C 0.26 7.06 5.16 -5.19 -0.03 7.03 16 6 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 10 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.70 15.19 7.81 -86.92 -0.68 14.51 16 15 O -0.57 -14.78 14.50 5.28 0.08 -14.71 16 16 N -0.75 -12.05 4.81 -59.81 -0.29 -12.33 16 17 C 0.16 2.21 2.49 -69.09 -0.17 2.04 16 18 H 0.12 1.81 7.44 -51.92 -0.39 1.42 16 19 C -0.10 -1.08 4.90 -104.63 -0.51 -1.59 16 20 C -0.10 -0.98 8.29 -39.58 -0.33 -1.31 16 21 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 22 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.10 -0.95 9.67 -39.58 -0.38 -1.33 16 25 C 0.25 3.36 5.00 37.16 0.19 3.55 16 26 F -0.19 -3.32 15.70 2.25 0.04 -3.29 16 27 F -0.21 -2.79 16.18 2.25 0.04 -2.76 16 28 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 30 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.09 1.55 7.72 -51.93 -0.40 1.15 16 32 H 0.06 0.91 6.36 -51.93 -0.33 0.58 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.39 5.46 4.61 -40.82 -0.19 5.27 16 37 H 0.12 1.22 6.79 -52.49 -0.36 0.87 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.13 1.02 8.04 -52.49 -0.42 0.60 16 42 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -34.95 364.69 -8.25 -43.20 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.38 Total: 4.72 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.50 Total: 2.46 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.00 Total: -52.22 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.07 Total: -6.05 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.95 -8.25 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296924173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.267 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds