Wall clock time and date at job start Sat Apr 11 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00352 * 5 4 3 7 7 H 1.08004 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47210 * 60.00704 * 10 8 6 12 12 H 1.48510 * 109.47028 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47297 * 300.00395 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21593 * 119.99953 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00097 * 0.26801 * 14 4 3 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 4 18 18 H 1.09008 * 109.46846 * 325.00097 * 17 16 14 19 19 C 1.50698 * 109.47318 * 205.00474 * 17 16 14 20 20 C 1.38233 * 119.99963 * 319.72582 * 19 17 16 21 21 C 1.38238 * 119.99983 * 179.79576 * 20 19 17 22 22 C 1.38231 * 119.99771 * 0.43087 * 21 20 19 23 23 C 1.38236 * 120.00300 * 359.82069 * 22 21 20 24 24 C 1.38235 * 119.99885 * 359.97280 * 23 22 21 25 25 C 1.52996 * 109.47098 * 85.00044 * 17 16 14 26 26 F 1.39905 * 109.47067 * 300.00056 * 25 17 16 27 27 F 1.39894 * 109.47275 * 60.00227 * 25 17 16 28 28 H 1.07995 * 120.00480 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 32 32 H 1.09004 * 109.47163 * 245.00280 * 3 2 1 33 33 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 34 34 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 35 35 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 36 36 H 0.97000 * 120.00112 * 359.73180 * 16 14 4 37 37 H 1.07998 * 120.00035 * 359.97438 * 20 19 17 38 38 H 1.08000 * 119.99876 * 180.27576 * 21 20 19 39 39 H 1.08006 * 120.00082 * 179.83660 * 22 21 20 40 40 H 1.08003 * 120.00105 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99742 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47061 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5185 4.0667 3.6082 9 7 1.9591 3.4660 4.6357 10 14 2.8730 5.8995 3.6773 11 1 2.1381 6.5873 2.5855 12 1 2.4320 6.4399 4.9884 13 1 4.3311 6.1282 3.5132 14 6 4.2497 0.8661 0.9824 15 8 5.0219 0.8887 1.9214 16 7 4.6515 0.3808 -0.2090 17 6 6.0185 -0.1200 -0.3727 18 1 6.6996 0.4786 0.2325 19 6 6.4184 -0.0240 -1.8224 20 6 5.5078 -0.3409 -2.8130 21 6 5.8733 -0.2488 -4.1430 22 6 7.1522 0.1515 -4.4821 23 6 8.0645 0.4633 -3.4915 24 6 7.6976 0.3754 -2.1616 25 6 6.0842 -1.5802 0.0790 26 9 5.7130 -1.6692 1.4250 27 9 5.2102 -2.3484 -0.6975 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4888 1.6967 2.5459 34 1 3.0989 1.3603 3.2260 35 1 1.7302 3.9747 5.4293 36 1 4.0356 0.3631 -0.9581 37 1 4.5099 -0.6575 -2.5479 38 1 5.1605 -0.4921 -4.9170 39 1 7.4387 0.2209 -5.5212 40 1 9.0638 0.7757 -3.7565 41 1 8.4105 0.6186 -1.3876 42 1 7.1014 -1.9527 -0.0423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296924173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:27 Heat of formation + Delta-G solvation = -94.204080 kcal Electronic energy + Delta-G solvation = -28112.410636 eV Core-core repulsion = 23921.291869 eV Total energy + Delta-G solvation = -4191.118767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.88957 -47.90653 -41.31853 -40.10227 -37.37687 -36.35492 -35.04797 -33.73417 -32.55343 -31.77365 -29.76722 -28.88128 -26.94564 -25.29237 -24.26761 -23.56972 -22.03026 -21.30276 -20.75141 -19.27549 -18.61866 -18.56519 -18.10629 -17.95977 -17.53597 -17.10945 -16.44603 -16.17724 -15.96920 -15.84679 -15.59506 -14.94526 -14.80732 -14.62418 -14.44056 -14.31667 -14.19274 -14.15642 -13.88805 -13.64041 -13.30614 -13.29853 -13.10169 -12.86845 -12.59132 -12.44568 -12.27807 -12.18642 -12.07571 -11.92581 -11.69106 -11.08772 -10.62043 -10.37083 -10.27281 -9.83548 -9.78127 -9.39137 -8.18995 -6.33978 0.27860 0.48631 1.24844 1.37519 1.41994 1.49367 1.83117 2.22462 2.41189 2.72599 2.98484 3.06929 3.11114 3.22257 3.38113 3.78292 3.96631 4.01004 4.08419 4.13309 4.18601 4.30948 4.32069 4.39280 4.60747 4.68800 4.76684 4.93982 4.99825 5.01845 5.13069 5.21350 5.33064 5.52477 5.53934 5.60517 5.61403 5.67384 5.73942 5.89198 6.05509 6.08070 6.09910 6.74702 7.09114 7.32927 7.70758 8.87738 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.003920 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.613794 B = 7141.207520 C = 7594.603308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.188 4.188 3 C 0.138 3.862 4 N -0.613 5.613 5 C 0.283 3.717 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.698 3.302 15 O -0.623 6.623 16 N -0.729 5.729 17 C 0.161 3.839 18 H 0.108 0.892 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.108 4.108 25 C 0.245 3.755 26 F -0.216 7.216 27 F -0.206 7.206 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.022 0.978 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.407 0.593 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -9.353 -22.174 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C 0.015 3.985 4 N -0.347 5.347 5 C 0.162 3.838 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.400 3.600 15 O -0.503 6.503 16 N -0.389 5.389 17 C 0.054 3.946 18 H 0.125 0.875 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.127 4.127 25 C 0.190 3.810 26 F -0.197 7.197 27 F -0.187 7.187 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.040 0.960 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.246 0.754 37 H 0.140 0.860 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.358 -9.300 -21.275 24.677 hybrid contribution -0.438 0.677 0.599 1.004 sum 7.920 -8.622 -20.676 23.761 Atomic orbital electron populations 1.24045 0.95276 1.03019 0.97663 1.23297 0.96997 0.97981 1.02472 1.20698 0.92713 0.96515 0.88565 1.47349 1.10123 1.63487 1.13731 1.18576 0.93561 0.92481 0.79206 1.21677 1.40514 0.94389 1.01405 0.92941 1.25841 0.94665 1.03712 0.94782 1.70057 1.42833 1.38167 1.05761 0.85471 0.78431 0.79030 0.77860 1.18469 1.20330 1.20414 1.16072 0.82636 0.78147 0.83152 1.90864 1.54315 1.63947 1.41141 1.45086 1.13822 1.68152 1.11844 1.20688 0.85299 0.92662 0.95955 0.87460 1.19459 0.96132 1.04110 0.91533 1.21097 0.99317 0.99007 0.93353 1.21428 0.97505 0.99286 0.95702 1.21611 0.93251 0.97269 1.00836 1.21462 1.01048 0.99417 0.91961 1.21250 0.94938 0.98390 0.98084 1.22843 0.93852 0.91893 0.72363 1.93036 1.93652 1.96899 1.36149 1.92930 1.73503 1.77432 1.74847 0.86582 0.87855 0.87811 0.89835 0.88948 0.95998 0.98654 0.92433 0.75389 0.86007 0.83676 0.83305 0.83354 0.84514 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 14.32 67.79 0.97 -3.15 16 2 C -0.19 -5.51 9.85 25.65 0.25 -5.26 16 3 C 0.14 4.62 5.61 85.63 0.48 5.10 16 4 N -0.61 -27.75 2.44 -848.58 -2.07 -29.82 16 5 C 0.28 15.97 5.16 85.63 0.44 16.41 16 6 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 7 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 8 C 0.01 0.52 5.46 84.65 0.46 0.99 16 9 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 10 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.70 31.44 7.81 179.06 1.40 32.84 16 15 O -0.62 -34.08 14.50 -4.01 -0.06 -34.14 16 16 N -0.73 -23.86 4.81 -461.41 -2.22 -26.08 16 17 C 0.16 4.43 2.49 44.24 0.11 4.54 16 18 H 0.11 3.29 7.44 -2.38 -0.02 3.27 16 19 C -0.11 -2.32 4.90 -19.87 -0.10 -2.42 16 20 C -0.11 -2.03 8.29 22.27 0.18 -1.85 16 21 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 22 C -0.11 -1.39 10.05 22.27 0.22 -1.17 16 23 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 24 C -0.11 -1.86 9.67 22.27 0.22 -1.64 16 25 C 0.25 6.53 5.00 71.98 0.36 6.89 16 26 F -0.22 -8.07 15.70 44.97 0.71 -7.37 16 27 F -0.21 -5.47 16.18 44.97 0.73 -4.75 16 28 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.10 2.55 7.84 -2.91 -0.02 2.52 16 30 H 0.10 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.08 2.89 7.72 -2.39 -0.02 2.87 16 32 H 0.09 2.51 6.36 -2.38 -0.02 2.50 16 33 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.41 11.12 4.61 -92.71 -0.43 10.69 16 37 H 0.12 2.24 6.79 -2.91 -0.02 2.22 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.14 2.01 8.04 -2.91 -0.02 1.98 16 42 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -79.26 364.69 5.70 -73.56 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.61 Total: 21.33 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 5.69 Total: 16.62 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -4.00 Total: -112.94 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.06 Total: -34.14 kcal Atomic # 9 Polarization: -13.55 SS G_CDS: 1.43 Total: -12.11 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -79.26 5.70 -73.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296924173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.646 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds