Wall clock time and date at job start Sat Apr 11 2020 01:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.53003 * 109.47049 * 119.99802 * 2 1 3 5 5 C 1.52995 * 109.46834 * 65.00454 * 4 2 1 6 6 N 1.46504 * 109.46971 * 180.02562 * 5 4 2 7 7 C 1.46504 * 119.99634 * 269.99788 * 6 5 4 8 8 C 1.50699 * 109.47018 * 269.99991 * 7 6 5 9 9 H 1.08002 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99903 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00143 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99977 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47325 * 89.99856 * 12 10 8 14 14 H 1.48504 * 109.47422 * 210.00202 * 12 10 8 15 15 H 1.48507 * 109.47276 * 329.99892 * 12 10 8 16 16 C 1.34771 * 120.00488 * 89.99717 * 6 5 4 17 17 O 1.21279 * 119.99620 * 359.97438 * 16 6 5 18 18 C 1.50701 * 119.99936 * 180.02562 * 16 6 5 19 19 C 1.50708 * 109.46940 * 179.97438 * 18 16 6 20 20 C 1.38168 * 120.42681 * 265.00139 * 19 18 16 21 21 N 1.31873 * 120.77409 * 180.30210 * 20 19 18 22 22 C 1.31908 * 121.76179 * 359.42367 * 21 20 19 23 23 C 1.38122 * 120.77726 * 0.57002 * 22 21 20 24 24 C 1.38775 * 120.42714 * 85.01680 * 19 18 16 25 25 Cl 1.73600 * 120.80380 * 359.96207 * 24 19 18 26 26 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47069 * 299.99714 * 1 2 3 28 28 H 1.08998 * 109.47251 * 59.99834 * 1 2 3 29 29 H 1.08994 * 109.47042 * 240.00264 * 2 1 3 30 30 H 1.09007 * 109.47279 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47302 * 300.00135 * 3 2 1 32 32 H 1.09003 * 109.47228 * 59.99744 * 3 2 1 33 33 H 1.08999 * 109.47204 * 304.99799 * 4 2 1 34 34 H 1.09007 * 109.46810 * 185.00223 * 4 2 1 35 35 H 1.08999 * 109.47760 * 59.99685 * 5 4 2 36 36 H 1.08999 * 109.46902 * 299.99548 * 5 4 2 37 37 H 1.09000 * 109.47056 * 29.99788 * 7 6 5 38 38 H 1.09001 * 109.47133 * 150.00087 * 7 6 5 39 39 H 0.97007 * 120.00234 * 180.02562 * 11 10 8 40 40 H 1.08998 * 109.47555 * 59.99935 * 18 16 6 41 41 H 1.09000 * 109.47024 * 299.99480 * 18 16 6 42 42 H 1.08002 * 119.60902 * 0.02562 * 20 19 18 43 43 H 1.08000 * 119.61446 * 180.31877 * 22 21 20 44 44 H 1.07998 * 120.42906 * 179.74255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1879 6 7 2.1231 -2.8859 2.3845 7 6 3.4514 -3.5039 2.3831 8 6 3.3409 -4.9311 1.9120 9 1 2.3777 -5.3371 1.6404 10 6 4.4695 -5.7186 1.8278 11 7 5.6424 -5.2244 2.1591 12 14 4.3325 -7.4878 1.2446 13 1 4.4910 -7.5363 -0.2311 14 1 5.3962 -8.3036 1.8837 15 1 3.0013 -8.0304 1.6176 16 6 1.3500 -2.9526 3.4864 17 8 0.2506 -2.4406 3.4876 18 6 1.8521 -3.6624 4.7173 19 6 0.8052 -3.5933 5.7992 20 6 0.8541 -2.5993 6.7577 21 7 -0.0550 -2.5359 7.7109 22 6 -1.0466 -3.4027 7.7835 23 6 -1.1615 -4.4241 6.8608 24 6 -0.2202 -4.5272 5.8457 25 17 -0.3234 -5.7937 4.6628 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6442 1.2952 35 1 2.0699 -2.6550 0.3002 36 1 0.5490 -2.2723 1.1420 37 1 4.1091 -2.9501 1.7132 38 1 3.8618 -3.4853 3.3927 39 1 6.4365 -5.7783 2.0995 40 1 2.7665 -3.1825 5.0659 41 1 2.0580 -4.7054 4.4766 42 1 1.6487 -1.8685 6.7285 43 1 -1.7751 -3.3152 8.5760 44 1 -1.9734 -5.1331 6.9279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298079153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:36 Heat of formation + Delta-G solvation = -32.914312 kcal Electronic energy + Delta-G solvation = -25584.538579 eV Core-core repulsion = 21947.874216 eV Total energy + Delta-G solvation = -3636.664363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31257 -39.00414 -36.61150 -36.46957 -34.74802 -33.21527 -32.55997 -31.75187 -29.57853 -27.61745 -27.02704 -26.77710 -23.54314 -23.43734 -23.05565 -21.83092 -19.76568 -18.38675 -17.25639 -16.80913 -16.61547 -16.29434 -15.66802 -14.99340 -14.84322 -14.50342 -14.37007 -13.90988 -13.73450 -13.66957 -13.45949 -13.08476 -12.80821 -12.48325 -12.33188 -12.13717 -12.06501 -11.95341 -11.71006 -11.51187 -11.31271 -11.04910 -10.98326 -10.79353 -10.70332 -10.67220 -10.49027 -10.27333 -10.03500 -9.75308 -9.53381 -9.30735 -9.27105 -8.79979 -8.57884 -7.72796 -6.22058 -4.29360 1.10044 1.14575 2.15695 3.19833 3.27493 3.29665 3.38657 3.67851 3.99983 4.30947 4.43936 4.74560 4.83655 5.01863 5.05389 5.11358 5.13123 5.14600 5.34204 5.43079 5.57615 5.68845 5.72470 5.73344 5.82690 5.84415 5.90234 5.99084 6.02249 6.08622 6.11768 6.26208 6.31423 6.34285 6.39884 6.59059 6.63710 6.68478 6.75905 7.13044 7.51171 7.73285 7.94045 8.01768 8.30677 8.75757 8.98563 9.39073 10.84523 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.005816 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.423820 B = 4812.926805 C = 7555.984257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.236 3.764 8 C -0.537 4.537 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.893 3.107 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.524 3.476 17 O -0.568 6.568 18 C -0.103 4.103 19 C -0.093 4.093 20 C 0.121 3.879 21 N -0.483 5.483 22 C 0.100 3.900 23 C -0.167 4.167 24 C 0.019 3.981 25 Cl -0.043 7.043 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 5.323 4.315 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.116 3.884 8 C -0.576 4.576 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.312 3.688 17 O -0.449 6.449 18 C -0.143 4.143 19 C -0.096 4.096 20 C -0.036 4.036 21 N -0.192 5.192 22 C -0.057 4.057 23 C -0.188 4.188 24 C -0.016 4.016 25 Cl -0.014 7.014 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.179 0.821 43 H 0.178 0.822 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.828 6.076 4.837 11.758 hybrid contribution 0.148 -1.950 -1.182 2.285 sum -8.680 4.126 3.655 10.283 Atomic orbital electron populations 1.21869 0.95385 1.02029 1.01095 1.21048 0.95807 0.95905 0.98534 1.21821 1.00898 0.96209 1.01260 1.21988 1.01016 0.95961 0.97586 1.21349 0.99830 0.90966 0.88157 1.48179 1.19263 1.53224 1.11616 1.19456 0.77572 0.92874 0.98493 1.21482 0.94149 0.96401 1.45538 0.92074 1.24913 0.95100 0.98621 0.94987 1.69914 0.98490 1.36904 1.47562 0.86574 0.78002 0.84405 0.79018 1.20492 1.21000 1.19761 1.20032 0.84641 0.79662 0.84480 1.90615 1.21155 1.49081 1.84019 1.20695 0.96816 1.05324 0.91514 1.20488 0.96251 0.95014 0.97815 1.22643 0.96663 0.95220 0.89103 1.67640 1.02868 1.25647 1.23001 1.22665 0.95523 0.90109 0.97383 1.22027 0.99886 1.01321 0.95535 1.21227 0.96033 0.92160 0.92158 1.98416 1.97524 1.49201 1.56217 0.92304 0.92808 0.93337 0.91212 0.92765 0.93093 0.92923 0.92023 0.91841 0.90650 0.90885 0.94523 0.94458 0.92497 0.87628 0.86069 0.82141 0.82233 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.95 37.16 0.33 -1.52 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.49 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.13 -1.98 5.01 -26.73 -0.13 -2.11 16 5 C 0.12 2.17 5.16 -4.04 -0.02 2.15 16 6 N -0.59 -12.00 2.46 -175.06 -0.43 -12.43 16 7 C 0.24 5.34 4.97 -5.19 -0.03 5.31 16 8 C -0.54 -13.47 9.28 -34.44 -0.32 -13.79 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.84 13.29 55.43 0.74 -23.10 16 12 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.52 10.47 7.67 -10.99 -0.08 10.39 16 17 O -0.57 -12.32 15.61 5.56 0.09 -12.23 16 18 C -0.10 -1.84 3.96 -29.03 -0.11 -1.95 16 19 C -0.09 -1.51 4.39 -104.45 -0.46 -1.97 16 20 C 0.12 1.82 10.84 -17.56 -0.19 1.62 16 21 N -0.48 -7.07 10.36 -13.27 -0.14 -7.21 16 22 C 0.10 1.25 11.18 -17.56 -0.20 1.05 16 23 C -0.17 -2.17 9.94 -39.41 -0.39 -2.56 16 24 C 0.02 0.30 6.37 -39.17 -0.25 0.05 16 25 Cl -0.04 -0.70 27.61 -51.86 -1.43 -2.14 16 26 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.07 1.35 5.84 -51.93 -0.30 1.05 16 37 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.04 0.86 6.44 -51.93 -0.33 0.52 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.11 1.70 7.32 -51.93 -0.38 1.32 16 41 H 0.12 2.33 7.10 -51.93 -0.37 1.96 16 42 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -28.78 380.30 -9.10 -37.88 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.76 Total: 2.77 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.87 Total: -4.50 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.17 Total: -42.73 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.43 Total: -2.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.78 -9.10 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298079153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.968 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds