Wall clock time and date at job start Sat Apr 11 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.53003 * 109.47049 * 119.99802 * 2 1 3 5 5 C 1.52995 * 109.46834 * 65.00454 * 4 2 1 6 6 N 1.46504 * 109.46971 * 180.02562 * 5 4 2 7 7 C 1.46504 * 119.99634 * 269.99788 * 6 5 4 8 8 C 1.50699 * 109.47018 * 269.99991 * 7 6 5 9 9 H 1.08002 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99903 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00143 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99977 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47325 * 89.99856 * 12 10 8 14 14 H 1.48504 * 109.47422 * 210.00202 * 12 10 8 15 15 H 1.48507 * 109.47276 * 329.99892 * 12 10 8 16 16 C 1.34771 * 120.00488 * 89.99717 * 6 5 4 17 17 O 1.21279 * 119.99620 * 359.97438 * 16 6 5 18 18 C 1.50701 * 119.99936 * 180.02562 * 16 6 5 19 19 C 1.50708 * 109.46940 * 179.97438 * 18 16 6 20 20 C 1.38168 * 120.42681 * 265.00139 * 19 18 16 21 21 N 1.31873 * 120.77409 * 180.30210 * 20 19 18 22 22 C 1.31908 * 121.76179 * 359.42367 * 21 20 19 23 23 C 1.38122 * 120.77726 * 0.57002 * 22 21 20 24 24 C 1.38775 * 120.42714 * 85.01680 * 19 18 16 25 25 Cl 1.73600 * 120.80380 * 359.96207 * 24 19 18 26 26 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47069 * 299.99714 * 1 2 3 28 28 H 1.08998 * 109.47251 * 59.99834 * 1 2 3 29 29 H 1.08994 * 109.47042 * 240.00264 * 2 1 3 30 30 H 1.09007 * 109.47279 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47302 * 300.00135 * 3 2 1 32 32 H 1.09003 * 109.47228 * 59.99744 * 3 2 1 33 33 H 1.08999 * 109.47204 * 304.99799 * 4 2 1 34 34 H 1.09007 * 109.46810 * 185.00223 * 4 2 1 35 35 H 1.08999 * 109.47760 * 59.99685 * 5 4 2 36 36 H 1.08999 * 109.46902 * 299.99548 * 5 4 2 37 37 H 1.09000 * 109.47056 * 29.99788 * 7 6 5 38 38 H 1.09001 * 109.47133 * 150.00087 * 7 6 5 39 39 H 0.97007 * 120.00234 * 180.02562 * 11 10 8 40 40 H 1.08998 * 109.47555 * 59.99935 * 18 16 6 41 41 H 1.09000 * 109.47024 * 299.99480 * 18 16 6 42 42 H 1.08002 * 119.60902 * 0.02562 * 20 19 18 43 43 H 1.08000 * 119.61446 * 180.31877 * 22 21 20 44 44 H 1.07998 * 120.42906 * 179.74255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1879 6 7 2.1231 -2.8859 2.3845 7 6 3.4514 -3.5039 2.3831 8 6 3.3409 -4.9311 1.9120 9 1 2.3777 -5.3371 1.6404 10 6 4.4695 -5.7186 1.8278 11 7 5.6424 -5.2244 2.1591 12 14 4.3325 -7.4878 1.2446 13 1 4.4910 -7.5363 -0.2311 14 1 5.3962 -8.3036 1.8837 15 1 3.0013 -8.0304 1.6176 16 6 1.3500 -2.9526 3.4864 17 8 0.2506 -2.4406 3.4876 18 6 1.8521 -3.6624 4.7173 19 6 0.8052 -3.5933 5.7992 20 6 0.8541 -2.5993 6.7577 21 7 -0.0550 -2.5359 7.7109 22 6 -1.0466 -3.4027 7.7835 23 6 -1.1615 -4.4241 6.8608 24 6 -0.2202 -4.5272 5.8457 25 17 -0.3234 -5.7937 4.6628 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6442 1.2952 35 1 2.0699 -2.6550 0.3002 36 1 0.5490 -2.2723 1.1420 37 1 4.1091 -2.9501 1.7132 38 1 3.8618 -3.4853 3.3927 39 1 6.4365 -5.7783 2.0995 40 1 2.7665 -3.1825 5.0659 41 1 2.0580 -4.7054 4.4766 42 1 1.6487 -1.8685 6.7285 43 1 -1.7751 -3.3152 8.5760 44 1 -1.9734 -5.1331 6.9279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298079153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:35 Heat of formation + Delta-G solvation = -46.496032 kcal Electronic energy + Delta-G solvation = -25585.127526 eV Core-core repulsion = 21947.874216 eV Total energy + Delta-G solvation = -3637.253310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53921 -40.48389 -37.86695 -37.70781 -36.37145 -34.53826 -34.39213 -32.84688 -30.96167 -29.19957 -28.32974 -28.00757 -24.97921 -24.69098 -24.63292 -23.08632 -20.89665 -19.97693 -18.62629 -18.35118 -18.00381 -17.80664 -17.21483 -16.32418 -16.24948 -15.96106 -15.80107 -15.17592 -14.86474 -14.81742 -14.62760 -14.39436 -14.26498 -14.10348 -13.78267 -13.51267 -13.32898 -13.16716 -13.13235 -12.84289 -12.83442 -12.72691 -12.53003 -12.25246 -12.07164 -11.95503 -11.90405 -11.56730 -11.53459 -11.40930 -10.87136 -10.63578 -10.57846 -10.41859 -10.01788 -9.42627 -8.20227 -6.33542 -0.01603 0.02218 0.95988 1.38708 1.41958 1.50000 1.76874 2.27914 2.42761 2.73108 3.10389 3.39944 3.61572 3.70645 3.80077 3.90245 3.97124 4.00334 4.08160 4.30469 4.36196 4.39384 4.57233 4.62379 4.69263 4.69611 4.77448 4.80219 4.83726 4.94028 4.96883 5.02421 5.03386 5.12454 5.16011 5.21216 5.33187 5.46736 5.50416 5.54188 5.67225 5.86881 6.06805 6.57637 6.82059 6.85848 7.30592 7.42177 8.85115 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.005816 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.423820 B = 4812.926805 C = 7555.984257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.115 4.115 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.252 3.748 8 C -0.542 4.542 9 H 0.049 0.951 10 C 0.028 3.972 11 N -0.916 5.916 12 Si 0.946 3.054 13 H -0.275 1.275 14 H -0.279 1.279 15 H -0.274 1.274 16 C 0.523 3.477 17 O -0.585 6.585 18 C -0.096 4.096 19 C -0.114 4.114 20 C 0.116 3.884 21 N -0.496 5.496 22 C 0.108 3.892 23 C -0.162 4.162 24 C 0.002 3.998 25 Cl -0.059 7.059 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.034 0.966 39 H 0.268 0.732 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.174 0.826 43 H 0.203 0.797 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 5.641 4.826 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.154 4.154 5 C -0.004 4.004 6 N -0.327 5.327 7 C 0.131 3.869 8 C -0.580 4.580 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.556 5.556 12 Si 0.772 3.228 13 H -0.201 1.201 14 H -0.205 1.205 15 H -0.199 1.199 16 C 0.312 3.688 17 O -0.467 6.467 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.041 4.041 21 N -0.205 5.205 22 C -0.049 4.049 23 C -0.182 4.182 24 C -0.033 4.033 25 Cl -0.030 7.030 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.191 0.809 43 H 0.219 0.781 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.879 6.404 5.340 12.927 hybrid contribution 0.394 -2.030 -1.291 2.437 sum -9.485 4.374 4.050 11.202 Atomic orbital electron populations 1.21835 0.94984 1.01387 1.01836 1.21053 0.96110 0.96833 0.97079 1.21786 1.00976 0.94884 1.02155 1.21872 1.00548 0.94326 0.98628 1.21453 0.99331 0.92380 0.87249 1.48202 1.18580 1.53395 1.12541 1.19111 0.78423 0.91733 0.97629 1.21621 0.93592 0.97540 1.45294 0.93266 1.25522 0.94860 1.01787 0.95144 1.69987 0.98983 1.38116 1.48467 0.85737 0.77820 0.80593 0.78673 1.20054 1.20463 1.19905 1.20390 0.84252 0.79301 0.84885 1.90589 1.21806 1.49922 1.84376 1.20569 0.97981 1.03834 0.91183 1.20433 0.96668 0.96453 0.98189 1.22849 0.97289 0.95083 0.88872 1.67726 1.03426 1.26453 1.22849 1.23391 0.95145 0.88698 0.97626 1.22397 0.99667 1.01820 0.94287 1.21501 0.96963 0.91984 0.92842 1.98404 1.97590 1.49884 1.57098 0.93632 0.93443 0.91186 0.90797 0.92655 0.91263 0.92967 0.93176 0.92372 0.91128 0.91454 0.95916 0.94848 0.92315 0.86540 0.87821 0.80874 0.78075 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.95 71.98 0.64 -2.85 16 2 C -0.09 -2.31 2.92 -10.79 -0.03 -2.34 16 3 C -0.14 -2.97 9.19 71.98 0.66 -2.31 16 4 C -0.12 -3.62 5.01 30.59 0.15 -3.47 16 5 C 0.12 4.38 5.16 86.38 0.45 4.82 16 6 N -0.60 -24.78 2.46 -826.15 -2.03 -26.81 16 7 C 0.25 11.67 4.97 85.63 0.43 12.10 16 8 C -0.54 -27.62 9.28 25.60 0.24 -27.38 16 9 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 10 C 0.03 1.42 5.46 84.65 0.46 1.89 16 11 N -0.92 -49.31 13.29 21.45 0.28 -49.02 16 12 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.52 21.30 7.67 87.66 0.67 21.97 16 17 O -0.58 -25.71 15.61 -3.03 -0.05 -25.76 16 18 C -0.10 -3.46 3.96 29.10 0.12 -3.35 16 19 C -0.11 -3.72 4.39 -19.75 -0.09 -3.80 16 20 C 0.12 3.37 10.84 84.67 0.92 4.29 16 21 N -0.50 -13.53 10.36 -195.91 -2.03 -15.56 16 22 C 0.11 2.37 11.18 84.65 0.95 3.32 16 23 C -0.16 -3.81 9.94 22.38 0.22 -3.59 16 24 C 0.00 0.06 6.37 22.54 0.14 0.20 16 25 Cl -0.06 -1.94 27.61 -2.72 -0.08 -2.01 16 26 H 0.04 1.22 6.56 -2.39 -0.02 1.20 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 36 H 0.07 2.56 5.84 -2.39 -0.01 2.55 16 37 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 38 H 0.03 1.58 6.44 -2.39 -0.02 1.56 16 39 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 40 H 0.12 3.83 7.32 -2.39 -0.02 3.81 16 41 H 0.10 4.12 7.10 -2.39 -0.02 4.10 16 42 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -61.26 380.30 5.04 -56.22 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.98 Total: 19.88 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.93 Total: -0.50 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -3.77 Total: -91.39 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.01 kcal Total: -61.26 5.04 -56.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298079153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.725 kcal (2) G-P(sol) polarization free energy of solvation -61.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds