Wall clock time and date at job start Sat Apr 11 2020 01:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47030 * 2 1 4 4 N 1.46498 * 109.46873 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00390 * 272.14294 * 4 3 2 6 6 H 1.08004 * 119.99830 * 8.55793 * 5 4 3 7 7 C 1.38811 * 120.00301 * 188.56898 * 5 4 3 8 8 N 1.31618 * 119.99852 * 24.80055 * 7 5 4 9 9 Si 1.86796 * 119.99943 * 204.79762 * 7 5 4 10 10 H 1.48499 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47237 * 120.00138 * 9 7 5 12 12 H 1.48504 * 109.47210 * 239.99866 * 9 7 5 13 13 C 1.46505 * 120.00039 * 92.14199 * 4 3 2 14 14 C 1.50704 * 109.46942 * 90.00011 * 13 4 3 15 15 O 1.21286 * 119.99991 * 359.97438 * 14 13 4 16 16 N 1.34775 * 119.99982 * 180.02562 * 14 13 4 17 17 C 1.46503 * 120.00255 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.46619 * 34.99878 * 17 16 14 19 19 C 1.52996 * 109.47098 * 275.00171 * 17 16 14 20 20 C 1.50690 * 109.47115 * 155.00026 * 17 16 14 21 21 C 1.38243 * 119.98700 * 220.00104 * 20 17 16 22 22 C 1.38214 * 120.01694 * 180.02562 * 21 20 17 23 23 C 1.38355 * 119.98365 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.01166 * 180.02562 * 23 22 21 25 25 C 1.38356 * 119.97672 * 0.27095 * 23 22 21 26 26 C 1.38213 * 119.98083 * 359.49400 * 25 23 22 27 27 H 1.08999 * 109.46976 * 300.00167 * 1 2 3 28 28 H 1.08997 * 109.46697 * 60.00163 * 1 2 3 29 29 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46976 * 239.99833 * 2 1 3 31 31 H 1.08997 * 109.46697 * 119.99837 * 2 1 3 32 32 H 1.08999 * 109.47378 * 60.00079 * 3 2 1 33 33 H 1.08995 * 109.47301 * 300.00043 * 3 2 1 34 34 H 0.97001 * 119.99733 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47043 * 330.00127 * 13 4 3 36 36 H 1.09000 * 109.47301 * 209.99779 * 13 4 3 37 37 H 0.96998 * 119.99846 * 359.97438 * 16 14 13 38 38 H 1.09000 * 109.47386 * 59.99830 * 19 17 16 39 39 H 1.08994 * 109.47082 * 179.97438 * 19 17 16 40 40 H 1.09007 * 109.47266 * 299.99711 * 19 17 16 41 41 H 1.08002 * 119.99433 * 0.02562 * 21 20 17 42 42 H 1.07998 * 120.00978 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00832 * 179.72727 * 25 23 22 44 44 H 1.08004 * 119.99395 * 180.23123 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.3983 1.1859 6 1 3.6579 1.2246 2.1100 7 6 5.5658 1.5770 1.1999 8 7 6.1520 2.2483 0.2314 9 14 6.5860 0.8648 2.5931 10 1 5.6946 0.1602 3.5494 11 1 7.5770 -0.0937 2.0412 12 1 7.2974 1.9620 3.2968 13 6 4.2381 1.4897 -1.2670 14 6 4.4894 2.9257 -1.6487 15 8 4.0947 3.8216 -0.9326 16 7 5.1520 3.2146 -2.7862 17 6 5.3959 4.6106 -3.1576 18 1 5.5698 5.2008 -2.2579 19 6 4.1771 5.1610 -3.9008 20 6 6.6066 4.6885 -4.0514 21 6 7.5139 5.7201 -3.8974 22 6 8.6243 5.7924 -4.7172 23 6 8.8281 4.8316 -5.6917 24 17 10.2230 4.9213 -6.7213 25 6 7.9172 3.8022 -5.8487 26 6 6.8097 3.7283 -5.0251 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 7.1139 2.3735 0.2414 35 1 3.6493 1.0045 -2.0454 36 1 5.1905 0.9714 -1.1555 37 1 5.4674 2.4982 -3.3590 38 1 3.3013 5.1047 -3.2544 39 1 4.3584 6.1997 -4.1768 40 1 4.0031 4.5708 -4.8006 41 1 7.3550 6.4698 -3.1364 42 1 9.3332 6.5982 -4.5966 43 1 8.0734 3.0544 -6.6121 44 1 6.1004 2.9227 -5.1450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299392176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:39 Heat of formation + Delta-G solvation = -16.708858 kcal Electronic energy + Delta-G solvation = -25345.027388 eV Core-core repulsion = 21709.065747 eV Total energy + Delta-G solvation = -3635.961641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89918 -39.77016 -37.79903 -37.35298 -35.87871 -34.59796 -32.62571 -32.24592 -31.94315 -30.08350 -28.51522 -27.26845 -24.91241 -24.03915 -23.67581 -22.12132 -21.56091 -20.84332 -18.98512 -18.21806 -17.43598 -17.05840 -16.91432 -16.18689 -15.91453 -15.74372 -15.52743 -15.15609 -14.84704 -14.68560 -14.48436 -14.44043 -14.23991 -13.88754 -13.79931 -13.36313 -13.27555 -13.00592 -12.78082 -12.60958 -12.53629 -12.47610 -12.23920 -12.15551 -12.02013 -11.94376 -11.90899 -11.74554 -11.70896 -11.34224 -10.65668 -10.18558 -10.01304 -9.70338 -9.52713 -8.79733 -7.84284 -5.09388 0.11444 0.31941 1.14227 1.45922 1.49814 1.58727 2.44431 2.51787 2.66579 2.82825 3.31255 3.63572 3.69359 3.81395 3.94705 4.27085 4.28451 4.33754 4.39769 4.43788 4.51285 4.60772 4.67274 4.70479 4.79862 4.80449 4.88790 4.96615 4.97751 5.09238 5.17727 5.23312 5.25239 5.29066 5.31057 5.32565 5.46385 5.55342 5.65714 5.70467 5.79622 6.01889 6.29940 7.04003 7.22106 7.87208 8.11260 8.31466 9.22468 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003214 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.083224 B = 8710.703555 C = 9888.711519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.151 3.849 4 N -0.592 5.592 5 C -0.251 4.251 6 H 0.068 0.932 7 C -0.048 4.048 8 N -0.912 5.912 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.306 1.306 13 C 0.163 3.837 14 C 0.534 3.466 15 O -0.583 6.583 16 N -0.730 5.730 17 C 0.189 3.811 18 H 0.052 0.948 19 C -0.143 4.143 20 C -0.082 4.082 21 C -0.108 4.108 22 C -0.110 4.110 23 C -0.047 4.047 24 Cl -0.071 7.071 25 C -0.106 4.106 26 C -0.101 4.101 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.040 0.960 34 H 0.243 0.757 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.399 0.601 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 1.683 -16.159 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.026 3.974 4 N -0.311 5.311 5 C -0.381 4.381 6 H 0.086 0.914 7 C -0.243 4.243 8 N -0.560 5.560 9 Si 0.786 3.214 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.234 1.234 13 C 0.033 3.967 14 C 0.321 3.679 15 O -0.461 6.461 16 N -0.385 5.385 17 C 0.083 3.917 18 H 0.070 0.930 19 C -0.202 4.202 20 C -0.083 4.083 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.074 4.074 24 Cl -0.042 7.042 25 C -0.124 4.124 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.172 0.828 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.827 2.343 -15.689 15.885 hybrid contribution 1.236 -0.103 0.883 1.523 sum 2.063 2.241 -14.806 15.116 Atomic orbital electron populations 1.21666 0.94406 1.02026 1.01707 1.21932 0.96108 0.97706 1.01187 1.20899 0.82719 0.95268 0.98546 1.44125 1.01077 1.84003 1.01926 1.19431 0.90176 1.41236 0.87272 0.91416 1.25257 0.98095 1.00474 1.00427 1.70066 1.08658 1.41089 1.36142 0.85367 0.78834 0.77626 0.79524 1.19783 1.21352 1.23427 1.20700 0.97654 0.91356 0.87013 1.22044 0.74625 0.93388 0.77838 1.90472 1.53796 1.50148 1.51637 1.46116 1.60463 1.06840 1.25060 1.19494 0.92443 0.84591 0.95169 0.92965 1.22045 0.96404 1.01641 1.00084 1.20090 0.95781 0.95980 0.96413 1.21133 0.93591 0.98645 0.99320 1.21177 0.98181 0.99003 0.94457 1.21079 0.91313 0.98807 0.96155 1.98362 1.41019 1.98134 1.66686 1.21249 0.93177 0.97675 1.00341 1.21083 0.97884 0.98711 0.94211 0.93193 0.92288 0.91592 0.92382 0.93648 0.95515 0.94190 0.94710 0.91286 0.89893 0.76524 0.94205 0.90759 0.90668 0.84843 0.83484 0.82818 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.90 16 2 C -0.13 -4.35 6.25 30.60 0.19 -4.16 16 3 C 0.15 6.31 5.67 86.38 0.49 6.80 16 4 N -0.59 -29.24 2.02 -706.34 -1.43 -30.67 16 5 C -0.25 -13.87 9.70 84.03 0.82 -13.06 16 6 H 0.07 3.75 7.94 -2.91 -0.02 3.73 16 7 C -0.05 -2.63 4.90 84.86 0.42 -2.21 16 8 N -0.91 -51.73 8.96 21.65 0.19 -51.54 16 9 Si 0.96 45.49 29.62 68.60 2.03 47.53 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 13 C 0.16 7.33 5.42 85.63 0.46 7.80 16 14 C 0.53 24.48 5.85 87.66 0.51 25.00 16 15 O -0.58 -32.54 15.82 -3.05 -0.05 -32.59 16 16 N -0.73 -25.81 5.03 -446.10 -2.24 -28.05 16 17 C 0.19 6.05 2.78 44.24 0.12 6.18 16 18 H 0.05 2.11 7.44 -2.39 -0.02 2.09 16 19 C -0.14 -3.91 9.46 71.98 0.68 -3.23 16 20 C -0.08 -2.14 4.95 -19.86 -0.10 -2.24 16 21 C -0.11 -2.68 9.67 22.27 0.22 -2.46 16 22 C -0.11 -2.38 9.83 22.29 0.22 -2.16 16 23 C -0.05 -0.99 6.32 22.33 0.14 -0.85 16 24 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.44 16 25 C -0.11 -2.09 9.83 22.29 0.22 -1.88 16 26 C -0.10 -2.18 9.05 22.27 0.20 -1.97 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 33 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 34 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 36 H 0.08 4.05 6.30 -2.39 -0.02 4.04 16 37 H 0.40 11.66 6.87 -92.71 -0.64 11.02 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.13 3.17 8.04 -2.91 -0.02 3.15 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.15 2.62 6.92 -2.91 -0.02 2.60 16 Total: -1.00 -69.06 378.58 4.09 -64.97 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.35 Total: 23.15 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.30 Total: 8.63 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.48 Total: -110.26 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.05 Total: -32.59 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -69.06 4.09 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299392176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.259 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds