Wall clock time and date at job start Sat Apr 11 2020 01:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 N 1.46500 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00242 * 272.20559 * 4 3 2 6 6 H 1.08004 * 119.99839 * 8.52638 * 5 4 3 7 7 C 1.38810 * 120.00065 * 188.54006 * 5 4 3 8 8 N 1.31614 * 120.00319 * 24.78254 * 7 5 4 9 9 Si 1.86808 * 119.99711 * 204.79145 * 7 5 4 10 10 H 1.48497 * 109.47385 * 89.99515 * 9 7 5 11 11 H 1.48500 * 109.46651 * 209.99784 * 9 7 5 12 12 H 1.48500 * 109.46690 * 329.99514 * 9 7 5 13 13 C 1.46504 * 119.99964 * 92.19496 * 4 3 2 14 14 C 1.50698 * 109.46613 * 90.00596 * 13 4 3 15 15 O 1.21276 * 120.00561 * 359.97438 * 14 13 4 16 16 N 1.34782 * 119.99842 * 179.72443 * 14 13 4 17 17 C 1.46503 * 120.00147 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46726 * 325.00307 * 17 16 14 19 19 C 1.52996 * 109.46768 * 85.00012 * 17 16 14 20 20 C 1.50695 * 109.47157 * 204.99872 * 17 16 14 21 21 C 1.38240 * 119.98669 * 319.72966 * 20 17 16 22 22 C 1.38225 * 120.01115 * 179.72353 * 21 20 17 23 23 C 1.38352 * 119.98494 * 0.54505 * 22 21 20 24 24 Cl 1.73597 * 120.01239 * 179.69811 * 23 22 21 25 25 C 1.38350 * 119.97443 * 359.73160 * 23 22 21 26 26 C 1.38217 * 119.98903 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.46900 * 59.99562 * 1 2 3 28 28 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46930 * 300.00069 * 1 2 3 30 30 H 1.09002 * 109.46742 * 240.00692 * 2 1 3 31 31 H 1.08993 * 109.47255 * 120.00125 * 2 1 3 32 32 H 1.08992 * 109.47334 * 60.00679 * 3 2 1 33 33 H 1.08998 * 109.47663 * 299.99971 * 3 2 1 34 34 H 0.97001 * 120.00026 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47460 * 330.00497 * 13 4 3 36 36 H 1.09001 * 109.47156 * 210.00099 * 13 4 3 37 37 H 0.97002 * 119.99810 * 0.02562 * 16 14 13 38 38 H 1.09007 * 109.47059 * 179.97438 * 19 17 16 39 39 H 1.08995 * 109.47630 * 299.99888 * 19 17 16 40 40 H 1.08998 * 109.47256 * 60.00620 * 19 17 16 41 41 H 1.07997 * 119.99898 * 359.97438 * 21 20 17 42 42 H 1.07996 * 120.00477 * 180.27221 * 22 21 20 43 43 H 1.08000 * 120.01089 * 179.97438 * 25 23 22 44 44 H 1.07993 * 119.99653 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1903 1.3968 1.1841 6 1 3.6596 1.2222 2.1084 7 6 5.5668 1.5749 1.1970 8 7 6.1526 2.2468 0.2287 9 14 6.5879 0.8608 2.5888 10 1 7.0188 -0.5146 2.2314 11 1 7.7841 1.7120 2.8122 12 1 5.7725 0.8176 3.8291 13 6 4.2370 1.4914 -1.2688 14 6 4.4880 2.9279 -1.6488 15 8 4.0940 3.8227 -0.9313 16 7 5.1550 3.2181 -2.7835 17 6 5.3986 4.6146 -3.1532 18 1 4.5496 5.2252 -2.8459 19 6 6.6650 5.1135 -2.4548 20 6 5.5755 4.7153 -4.6464 21 6 6.2949 3.7485 -5.3237 22 6 6.4527 3.8374 -6.6940 23 6 5.9000 4.9002 -7.3862 24 17 6.1044 5.0166 -9.1062 25 6 5.1850 5.8705 -6.7070 26 6 5.0227 5.7774 -5.3376 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 7.1145 2.3716 0.2380 35 1 3.6476 1.0072 -2.0473 36 1 5.1895 0.9729 -1.1587 37 1 5.4730 2.5023 -3.3557 38 1 6.8466 6.1525 -2.7302 39 1 6.5371 5.0407 -1.3748 40 1 7.5140 4.5030 -2.7621 41 1 6.7304 2.9215 -4.7827 42 1 7.0111 3.0797 -7.2236 43 1 4.7537 6.7006 -7.2467 44 1 4.4642 6.5345 -4.8073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299392179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:43 Heat of formation + Delta-G solvation = -16.101057 kcal Electronic energy + Delta-G solvation = -25322.246868 eV Core-core repulsion = 21686.311583 eV Total energy + Delta-G solvation = -3635.935285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90095 -39.76893 -37.78979 -37.34484 -35.87210 -34.59280 -32.62899 -32.23645 -31.93285 -30.06121 -28.51902 -27.26083 -24.89492 -24.03760 -23.66987 -22.11697 -21.57854 -20.82772 -18.95202 -18.21699 -17.43784 -17.12444 -16.83134 -16.17521 -15.92885 -15.70755 -15.49535 -15.18323 -14.83671 -14.63834 -14.50526 -14.42395 -14.24068 -14.00143 -13.68991 -13.29085 -13.25303 -13.06317 -12.75915 -12.58995 -12.54077 -12.47671 -12.23150 -12.14950 -12.02235 -11.98286 -11.86545 -11.72902 -11.71557 -11.34524 -10.64087 -10.17985 -10.00747 -9.71543 -9.51486 -8.78547 -7.81868 -5.07433 0.11218 0.32465 1.15542 1.48903 1.51098 1.58038 2.47454 2.51322 2.60920 2.87480 3.32534 3.64846 3.70009 3.81891 3.95973 4.25948 4.26837 4.34682 4.40363 4.45806 4.50884 4.58872 4.66976 4.71173 4.79540 4.80141 4.89801 4.96275 4.99319 5.08900 5.19682 5.24225 5.24866 5.30286 5.31780 5.38424 5.45773 5.55289 5.65497 5.71598 5.79736 6.02350 6.31908 7.04289 7.23320 7.87886 8.11256 8.33056 9.24648 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.003066 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.436810 B = 9130.722542 C =10264.505248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.151 3.849 4 N -0.591 5.591 5 C -0.254 4.254 6 H 0.067 0.933 7 C -0.046 4.046 8 N -0.908 5.908 9 Si 0.957 3.043 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.282 1.282 13 C 0.163 3.837 14 C 0.534 3.466 15 O -0.582 6.582 16 N -0.730 5.730 17 C 0.193 3.807 18 H 0.066 0.934 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.102 4.102 22 C -0.106 4.106 23 C -0.046 4.046 24 Cl -0.071 7.071 25 C -0.107 4.107 26 C -0.103 4.103 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.245 0.755 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 2.123 -17.437 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.026 3.974 4 N -0.311 5.311 5 C -0.384 4.384 6 H 0.084 0.916 7 C -0.241 4.241 8 N -0.555 5.555 9 Si 0.788 3.212 10 H -0.210 1.210 11 H -0.231 1.231 12 H -0.207 1.207 13 C 0.033 3.967 14 C 0.321 3.679 15 O -0.460 6.460 16 N -0.385 5.385 17 C 0.087 3.913 18 H 0.084 0.916 19 C -0.199 4.199 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.072 4.072 24 Cl -0.042 7.042 25 C -0.125 4.125 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.463 2.798 -17.026 17.316 hybrid contribution 1.092 -0.225 0.792 1.368 sum -0.371 2.573 -16.234 16.441 Atomic orbital electron populations 1.21667 0.94427 1.02023 1.01690 1.21931 0.96096 0.97728 1.01172 1.20892 0.82827 0.95244 0.98475 1.44107 1.01012 1.84039 1.01957 1.19378 0.90202 1.41626 0.87212 0.91559 1.25250 0.98032 1.00368 1.00445 1.70053 1.08771 1.40651 1.35976 0.85408 0.78032 0.78051 0.79731 1.21002 1.23114 1.20741 1.20696 0.97719 0.91357 0.86918 1.22045 0.74430 0.93393 0.78027 1.90471 1.54158 1.50208 1.51145 1.46127 1.60222 1.06873 1.25324 1.19456 0.97517 0.84617 0.89673 0.91631 1.21972 0.97212 1.01092 0.99635 1.20050 0.97952 0.96067 0.94216 1.21054 0.98201 0.99062 0.93763 1.21215 0.99773 0.97633 0.93839 1.21083 1.02710 0.98364 0.85064 1.98367 1.96321 1.98017 1.11477 1.21207 0.98498 0.98906 0.93929 1.21149 0.99285 0.98030 0.93695 0.92364 0.91583 0.93151 0.92476 0.93564 0.95480 0.94360 0.94547 0.91648 0.89636 0.76557 0.90996 0.95136 0.92210 0.84277 0.83140 0.83097 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.40 6.25 30.60 0.19 -4.20 16 3 C 0.15 6.36 5.67 86.38 0.49 6.85 16 4 N -0.59 -29.25 2.02 -706.36 -1.43 -30.68 16 5 C -0.25 -13.98 9.70 84.03 0.82 -13.17 16 6 H 0.07 3.67 7.94 -2.91 -0.02 3.65 16 7 C -0.05 -2.49 4.90 84.86 0.42 -2.07 16 8 N -0.91 -50.35 8.96 21.65 0.19 -50.16 16 9 Si 0.96 45.09 29.62 68.60 2.03 47.12 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.16 7.36 5.42 85.63 0.46 7.82 16 14 C 0.53 24.46 5.86 87.66 0.51 24.97 16 15 O -0.58 -32.39 15.83 -3.02 -0.05 -32.44 16 16 N -0.73 -25.89 5.03 -446.11 -2.24 -28.14 16 17 C 0.19 6.17 2.77 44.24 0.12 6.29 16 18 H 0.07 2.39 7.44 -2.39 -0.02 2.37 16 19 C -0.14 -4.68 9.46 71.98 0.68 -4.00 16 20 C -0.08 -2.00 4.95 -19.86 -0.10 -2.10 16 21 C -0.10 -2.17 9.05 22.27 0.20 -1.97 16 22 C -0.11 -1.98 9.83 22.29 0.22 -1.76 16 23 C -0.05 -0.86 6.32 22.32 0.14 -0.72 16 24 Cl -0.07 -1.22 28.96 -2.72 -0.08 -1.30 16 25 C -0.11 -1.98 9.83 22.29 0.22 -1.76 16 26 C -0.10 -2.18 9.67 22.27 0.22 -1.96 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 33 H 0.04 1.55 8.05 -2.39 -0.02 1.53 16 34 H 0.24 13.46 8.31 -92.71 -0.77 12.69 16 35 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 36 H 0.09 4.14 6.29 -2.39 -0.02 4.13 16 37 H 0.40 11.78 6.89 -92.71 -0.64 11.14 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.14 2.74 6.93 -2.91 -0.02 2.72 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.14 2.67 8.04 -2.91 -0.02 2.65 16 Total: -1.00 -67.41 378.61 4.09 -63.33 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.35 Total: 23.01 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.30 Total: 9.26 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -3.48 Total: -108.98 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.05 Total: -32.44 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -67.41 4.09 -63.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299392179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.226 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds