Wall clock time and date at job start Sat Apr 11 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 H 1.08002 * 120.00119 * 120.00052 * 4 2 1 6 6 C 1.37881 * 120.00394 * 300.00263 * 4 2 1 7 7 N 1.31508 * 120.00401 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99435 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.46954 * 90.00203 * 8 6 4 10 10 H 1.48501 * 109.46843 * 210.00277 * 8 6 4 11 11 H 1.48504 * 109.47114 * 330.00314 * 8 6 4 12 12 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 13 13 C 1.46893 * 111.00136 * 306.04405 * 12 2 1 14 14 C 1.46901 * 110.99853 * 70.00100 * 12 2 1 15 15 C 1.50701 * 109.46921 * 169.99766 * 14 12 2 16 16 O 1.21280 * 119.99781 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 12 18 18 C 1.46497 * 119.99566 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.46983 * 180.02562 * 18 17 15 20 20 O 1.42904 * 109.47179 * 65.00188 * 19 18 17 21 21 C 1.35949 * 116.99829 * 180.02562 * 20 19 18 22 22 C 1.38700 * 120.03176 * 359.71700 * 21 20 19 23 23 C 1.38155 * 119.97006 * 179.79668 * 22 21 20 24 24 C 1.38452 * 120.02902 * 0.48335 * 23 22 21 25 25 F 1.35092 * 119.97335 * 179.72468 * 24 23 22 26 26 C 1.38457 * 120.05865 * 359.74847 * 24 23 22 27 27 C 1.38149 * 120.02941 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 30 30 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 31 31 H 0.97005 * 119.99916 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47439 * 183.95618 * 13 12 2 33 33 H 1.08997 * 109.47257 * 303.95746 * 13 12 2 34 34 H 1.09006 * 109.46808 * 63.95302 * 13 12 2 35 35 H 1.09002 * 109.47401 * 49.99794 * 14 12 2 36 36 H 1.09001 * 109.46874 * 289.99807 * 14 12 2 37 37 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 38 38 H 1.09001 * 109.47487 * 300.00114 * 18 17 15 39 39 H 1.09002 * 109.47182 * 60.00342 * 18 17 15 40 40 H 1.09006 * 109.47500 * 185.00227 * 19 18 17 41 41 H 1.09008 * 109.47017 * 305.00229 * 19 18 17 42 42 H 1.07997 * 120.02052 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.98667 * 180.20885 * 23 22 21 44 44 H 1.08000 * 119.98584 * 179.97438 * 26 24 23 45 45 H 1.08009 * 120.01248 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1995 13 6 1.4344 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4091 15 6 2.4775 -0.5163 -3.5795 16 8 3.1494 -1.5135 -3.4215 17 7 2.3778 0.0427 -4.8018 18 6 3.0817 -0.5541 -5.9396 19 6 2.8040 0.2685 -7.1994 20 8 3.3661 1.5738 -7.0496 21 6 3.2067 2.4372 -8.0875 22 6 2.5286 2.0338 -9.2282 23 6 2.3637 2.9137 -10.2805 24 6 2.8837 4.1944 -10.2008 25 9 2.7267 5.0520 -11.2327 26 6 3.5650 4.5968 -9.0646 27 6 3.7272 3.7205 -8.0090 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9041 -0.5274 4.4375 32 1 1.8665 -2.5521 -2.1648 33 1 1.6467 -2.5987 -0.3992 34 1 0.3556 -1.9520 -1.4399 35 1 2.1025 1.1189 -2.2604 36 1 0.6814 0.1053 -2.6087 37 1 1.8401 0.8400 -4.9281 38 1 4.1533 -0.5622 -5.7403 39 1 2.7319 -1.5758 -6.0880 40 1 3.2539 -0.2240 -8.0615 41 1 1.7274 0.3515 -7.3492 42 1 2.1265 1.0336 -9.2924 43 1 1.8329 2.6009 -11.1675 44 1 3.9705 5.5959 -9.0039 45 1 4.2591 4.0346 -7.1230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161850435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:05 Heat of formation + Delta-G solvation = -95.141203 kcal Electronic energy + Delta-G solvation = -26458.631365 eV Core-core repulsion = 22390.932266 eV Total energy + Delta-G solvation = -4067.699098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81951 -41.23548 -40.73152 -38.70705 -38.21164 -35.77104 -34.64788 -32.35194 -32.01344 -31.25315 -29.93817 -28.61306 -27.19599 -25.94412 -24.69590 -23.58884 -22.65841 -21.79802 -20.91381 -19.40405 -18.71470 -18.39567 -18.20928 -17.69181 -17.27586 -16.71063 -16.63564 -16.60009 -16.32442 -15.88335 -15.69917 -15.40768 -15.21359 -14.83156 -14.64098 -14.54890 -14.17706 -14.15159 -13.99112 -13.72415 -13.54717 -13.28657 -13.13189 -12.97169 -12.79450 -12.63353 -12.51527 -12.12670 -11.90357 -11.84695 -11.75307 -11.41648 -11.13269 -10.73468 -10.66431 -10.17554 -10.05727 -9.11083 -8.90003 -8.24289 -6.27804 0.17398 0.20677 1.32728 1.38925 1.49622 1.72126 2.07197 2.18713 2.35211 2.57995 3.09305 3.34261 3.35649 3.63280 3.80205 3.86232 3.96827 4.10673 4.14334 4.31093 4.34184 4.38581 4.38792 4.48056 4.49241 4.56560 4.64371 4.69038 4.75693 4.83678 4.84912 4.92265 5.04052 5.13614 5.17282 5.22853 5.25877 5.45126 5.49686 5.64522 5.70677 6.03046 6.35529 6.36010 6.56171 6.75867 6.79151 7.35215 7.37798 8.93107 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.002048 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.339434 B =13671.374729 C =14539.214348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.185 3.815 3 H 0.042 0.958 4 C -0.504 4.504 5 H 0.029 0.971 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.957 3.043 9 H -0.267 1.267 10 H -0.302 1.302 11 H -0.240 1.240 12 N -0.534 5.534 13 C 0.041 3.959 14 C 0.031 3.969 15 C 0.517 3.483 16 O -0.565 6.565 17 N -0.718 5.718 18 C 0.122 3.878 19 C 0.050 3.950 20 O -0.323 6.323 21 C 0.115 3.885 22 C -0.179 4.179 23 C -0.114 4.114 24 C 0.035 3.965 25 F -0.152 7.152 26 C -0.115 4.115 27 C -0.134 4.134 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 10.043 -32.238 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.077 3.923 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.048 0.952 6 C -0.192 4.192 7 N -0.594 5.594 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.230 1.230 11 H -0.163 1.163 12 N -0.258 5.258 13 C -0.107 4.107 14 C -0.100 4.100 15 C 0.303 3.697 16 O -0.443 6.443 17 N -0.373 5.373 18 C -0.001 4.001 19 C -0.025 4.025 20 O -0.237 6.237 21 C 0.069 3.931 22 C -0.198 4.198 23 C -0.133 4.133 24 C 0.016 3.984 25 F -0.131 7.131 26 C -0.134 4.134 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.181 0.819 43 H 0.173 0.827 44 H 0.172 0.828 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.683 9.311 -31.781 33.226 hybrid contribution -1.225 0.735 0.424 1.490 sum -3.908 10.045 -31.357 33.158 Atomic orbital electron populations 1.22706 0.99281 1.01503 1.00523 1.19635 0.90398 0.94468 0.87800 0.94003 1.21181 1.30372 1.12435 0.90302 0.95241 1.25888 0.97701 1.00400 0.95181 1.70063 1.47982 1.42744 0.98563 0.85744 0.78728 0.79647 0.77526 1.19283 1.22956 1.16343 1.61681 1.59936 1.02932 1.01246 1.22234 0.96257 0.90778 1.01400 1.22091 0.99816 0.98989 0.89089 1.20805 0.80752 0.83665 0.84441 1.90664 1.41680 1.27120 1.84809 1.45800 1.52157 1.32025 1.07294 1.21433 0.97791 0.97003 0.83909 1.23266 1.00337 0.80656 0.98216 1.86149 1.74635 1.24043 1.38898 1.19175 0.95901 0.90444 0.87548 1.21385 1.03318 1.02191 0.92869 1.21205 0.99877 0.91523 1.00654 1.17886 1.04579 0.89420 0.86529 1.91467 1.94396 1.69889 1.57368 1.21158 0.98995 1.01528 0.91696 1.20502 1.03073 0.91267 1.00427 0.92855 0.94330 0.91103 0.92638 0.91260 0.94079 0.95052 0.86928 0.89807 0.74838 0.92137 0.88596 0.87842 0.88699 0.81914 0.82741 0.82803 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.09 7.92 71.98 0.57 -6.52 16 2 C 0.18 8.46 1.90 44.17 0.08 8.54 16 3 H 0.04 1.90 6.99 -2.39 -0.02 1.88 16 4 C -0.50 -29.33 8.49 25.60 0.22 -29.11 16 5 H 0.03 1.97 7.37 -2.91 -0.02 1.95 16 6 C 0.00 0.27 5.45 84.66 0.46 0.74 16 7 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 8 Si 0.96 44.15 24.37 68.60 1.67 45.83 16 9 H -0.27 -11.63 6.87 99.48 0.68 -10.95 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.24 -9.88 6.53 99.48 0.65 -9.23 16 12 N -0.53 -22.32 4.44 -906.04 -4.02 -26.34 16 13 C 0.04 1.69 8.34 127.69 1.06 2.76 16 14 C 0.03 0.92 5.02 85.56 0.43 1.35 16 15 C 0.52 14.89 7.56 87.66 0.66 15.55 16 16 O -0.56 -21.68 14.31 -3.03 -0.04 -21.72 16 17 N -0.72 -13.23 5.50 -463.06 -2.55 -15.78 16 18 C 0.12 1.82 6.06 86.38 0.52 2.35 16 19 C 0.05 0.41 4.87 71.98 0.35 0.76 16 20 O -0.32 -4.35 10.08 -92.97 -0.94 -5.29 16 21 C 0.11 1.46 6.69 22.49 0.15 1.62 16 22 C -0.18 -1.68 9.04 22.36 0.20 -1.48 16 23 C -0.11 -1.23 10.02 22.30 0.22 -1.00 16 24 C 0.04 0.50 7.30 22.37 0.16 0.66 16 25 F -0.15 -2.54 17.26 44.97 0.78 -1.76 16 26 C -0.12 -1.46 10.02 22.30 0.22 -1.24 16 27 C -0.13 -1.75 9.98 22.36 0.22 -1.53 16 28 H 0.05 2.12 6.42 -2.39 -0.02 2.11 16 29 H 0.04 1.56 3.27 -2.39 -0.01 1.56 16 30 H 0.07 2.15 6.91 -2.39 -0.02 2.13 16 31 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 32 H 0.07 2.77 5.88 -2.39 -0.01 2.76 16 33 H 0.04 1.95 6.76 -2.39 -0.02 1.93 16 34 H 0.03 1.12 6.46 -2.38 -0.02 1.11 16 35 H 0.11 2.97 7.93 -2.39 -0.02 2.96 16 36 H 0.08 2.00 7.06 -2.39 -0.02 1.98 16 37 H 0.42 5.33 8.47 -92.71 -0.79 4.55 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 0.43 7.65 -2.38 -0.02 0.41 16 41 H 0.09 0.39 7.67 -2.38 -0.02 0.37 16 42 H 0.16 0.62 6.30 -2.91 -0.02 0.60 16 43 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -78.56 362.99 0.91 -77.66 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.16 Total: 14.31 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.55 Total: -6.57 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -6.27 Total: -102.45 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.98 Total: -27.01 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.67 Total: 45.83 kcal Total: -78.56 0.91 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161850435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.486 kcal (2) G-P(sol) polarization free energy of solvation -78.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds