Wall clock time and date at job start Sat Apr 11 2020 01:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00198 * 2 1 4 4 C 1.50701 * 109.46874 * 293.95144 * 3 2 1 5 5 C 1.38235 * 119.99808 * 89.99842 * 4 3 2 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 9 9 C 1.38230 * 119.99865 * 269.97587 * 4 3 2 10 10 C 1.46899 * 110.99931 * 123.95184 * 2 1 3 11 11 C 1.50703 * 109.47337 * 66.04578 * 10 2 1 12 12 C 1.38400 * 119.92212 * 269.72880 * 11 10 2 13 13 C 1.38357 * 120.29752 * 179.76342 * 12 11 10 14 14 C 1.37960 * 120.15633 * 0.50816 * 13 12 11 15 15 C 1.39629 * 119.84081 * 359.74756 * 14 13 12 16 16 C 1.47730 * 120.14874 * 180.02562 * 15 14 13 17 17 O 1.21589 * 120.00324 * 179.97438 * 16 15 14 18 18 N 1.34783 * 119.99528 * 359.97438 * 16 15 14 19 19 C 1.36876 * 119.99434 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00321 * 0.02562 * 19 18 16 21 21 C 1.39051 * 119.99515 * 180.02562 * 19 18 16 22 22 N 1.31365 * 119.99659 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46902 * 89.99958 * 23 21 19 25 25 H 1.48491 * 109.47463 * 210.00370 * 23 21 19 26 26 H 1.48507 * 109.47124 * 330.00366 * 23 21 19 27 27 C 1.37915 * 119.92133 * 89.99996 * 11 10 2 28 28 H 1.09008 * 109.46783 * 60.00284 * 1 2 3 29 29 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47489 * 300.00174 * 1 2 3 31 31 H 1.08993 * 109.47642 * 173.94709 * 3 2 1 32 32 H 1.09001 * 109.46800 * 53.94480 * 3 2 1 33 33 H 1.08000 * 120.00616 * 359.70324 * 5 4 3 34 34 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.99666 * 179.97438 * 7 6 5 36 36 H 1.08000 * 119.99729 * 180.02562 * 8 7 6 37 37 H 1.08001 * 120.00371 * 0.02562 * 9 4 3 38 38 H 1.09002 * 109.47174 * 186.05147 * 10 2 1 39 39 H 1.09008 * 109.47008 * 306.04884 * 10 2 1 40 40 H 1.07991 * 119.84993 * 0.02562 * 12 11 10 41 41 H 1.07997 * 119.91986 * 180.25880 * 13 12 11 42 42 H 1.07997 * 120.08015 * 179.77077 * 14 13 12 43 43 H 0.96991 * 120.00246 * 0.02562 * 18 16 15 44 44 H 0.96995 * 119.99705 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.07689 * 359.95610 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 6 0.4512 2.7490 -1.4080 6 6 0.1226 3.3692 -2.5990 7 6 0.9789 3.2858 -3.6809 8 6 2.1651 2.5846 -3.5711 9 6 2.4942 1.9653 -2.3798 10 6 1.9954 -0.7659 1.1376 11 6 1.6369 -2.2204 0.9730 12 6 0.4519 -2.7033 1.5003 13 6 0.1127 -4.0362 1.3495 14 6 0.9598 -4.8955 0.6806 15 6 2.1594 -4.4160 0.1508 16 6 3.0712 -5.3300 -0.5672 17 8 4.1149 -4.9096 -1.0279 18 7 2.7461 -6.6301 -0.7114 19 6 3.5908 -7.4769 -1.3771 20 1 4.5178 -7.1034 -1.7863 21 6 3.2552 -8.8180 -1.5263 22 7 4.0660 -9.6308 -2.1647 23 14 1.6521 -9.4642 -0.8179 24 1 0.5759 -9.3384 -1.8334 25 1 1.8159 -10.8920 -0.4443 26 1 1.2900 -8.6756 0.3873 27 6 2.4930 -3.0683 0.3021 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.0796 1.3445 0.1084 32 1 1.5610 1.9274 0.8308 33 1 -0.2207 2.8093 -0.5646 34 1 -0.8041 3.9173 -2.6847 35 1 0.7220 3.7700 -4.6115 36 1 2.8343 2.5197 -4.4163 37 1 3.4206 1.4168 -2.2943 38 1 3.0797 -0.6610 1.1757 39 1 1.5609 -0.3872 2.0628 40 1 -0.2130 -2.0359 2.0282 41 1 -0.8155 -4.4056 1.7598 42 1 0.6956 -5.9364 0.5668 43 1 1.9134 -6.9654 -0.3442 44 1 3.8321 -10.5664 -2.2685 45 1 3.4191 -2.6909 -0.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170627608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:12 Heat of formation + Delta-G solvation = 25.407508 kcal Electronic energy + Delta-G solvation = -25851.076872 eV Core-core repulsion = 22219.374383 eV Total energy + Delta-G solvation = -3631.702489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.88569 -39.38640 -37.97952 -36.72301 -34.12241 -32.66856 -31.78921 -31.11260 -30.73501 -30.58009 -27.56672 -26.47585 -25.33890 -23.14487 -22.66849 -22.62192 -21.25352 -20.88409 -19.30316 -18.61437 -16.98992 -16.55355 -15.93196 -15.87867 -15.65186 -15.51260 -15.13168 -14.86573 -14.52840 -14.16894 -13.83255 -13.72161 -13.58022 -13.35041 -12.99668 -12.98846 -12.76763 -12.55999 -12.24322 -12.17364 -12.05792 -11.87969 -11.66156 -11.35637 -11.26856 -11.13548 -11.06992 -10.74267 -10.63310 -10.04578 -9.68222 -9.07999 -9.02236 -8.63860 -8.61139 -8.56356 -8.37282 -8.26461 -6.43773 -3.87722 1.11555 1.24026 1.29460 1.62175 2.97465 3.01943 3.09523 3.40283 3.63084 4.01081 4.08676 4.44910 4.51047 4.57040 4.63605 4.80007 4.83390 4.91694 4.96954 5.07137 5.17728 5.18987 5.24099 5.24576 5.31455 5.37323 5.42422 5.49272 5.56900 5.58796 5.72754 5.81562 5.86620 5.87621 5.91780 6.14294 6.25317 6.27202 6.34540 6.44337 6.62435 6.69706 6.77916 6.81272 6.88704 6.91237 7.18195 7.47981 8.07001 8.50420 8.85100 9.31984 9.77843 10.68269 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002555 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.204015 B =10955.626352 C =11750.438328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.093 3.907 4 C -0.076 4.076 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.121 4.121 9 C -0.096 4.096 10 C 0.098 3.902 11 C -0.088 4.088 12 C -0.114 4.114 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.095 4.095 16 C 0.476 3.524 17 O -0.578 6.578 18 N -0.571 5.571 19 C -0.299 4.299 20 H 0.124 0.876 21 C 0.043 3.957 22 N -0.868 5.868 23 Si 0.877 3.123 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.267 1.267 27 C -0.051 4.051 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.372 0.628 44 H 0.277 0.723 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 23.315 5.933 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.034 4.034 4 C -0.076 4.076 5 C -0.133 4.133 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.139 4.139 9 C -0.114 4.114 10 C -0.029 4.029 11 C -0.089 4.089 12 C -0.133 4.133 13 C -0.143 4.143 14 C -0.127 4.127 15 C -0.099 4.099 16 C 0.265 3.735 17 O -0.463 6.463 18 N -0.208 5.208 19 C -0.428 4.428 20 H 0.141 0.859 21 C -0.162 4.162 22 N -0.507 5.507 23 Si 0.703 3.297 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.193 1.193 27 C -0.071 4.071 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.206 0.794 44 H 0.087 0.913 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.472 23.091 5.105 25.864 hybrid contribution -1.639 -0.465 1.147 2.054 sum -12.112 22.627 6.252 26.415 Atomic orbital electron populations 1.22548 0.87296 1.02841 1.00346 1.61958 1.08275 1.12050 1.42988 1.21075 1.00706 0.88110 0.93550 1.19724 0.94825 0.97403 0.95687 1.21036 0.96354 0.98062 0.97877 1.21091 0.99613 1.00166 0.93360 1.21149 0.94742 0.99577 0.98590 1.21192 0.97108 0.97788 0.97778 1.21094 0.99796 0.98093 0.92449 1.21027 1.00609 0.90012 0.91204 1.19521 0.95201 0.94549 0.99634 1.20997 0.96307 0.95499 1.00489 1.20932 0.99584 0.93558 1.00181 1.21348 0.93986 0.99617 0.97752 1.20330 0.95154 0.94957 0.99450 1.17626 0.87629 0.82230 0.86024 1.90633 1.26137 1.76022 1.53499 1.42206 1.20501 1.08268 1.49843 1.19545 1.03683 0.89376 1.30186 0.85853 1.25114 0.98153 0.95772 0.97162 1.69598 1.36115 1.05396 1.39545 0.86695 0.83577 0.79776 0.79660 1.19210 1.19765 1.19286 1.21045 0.99291 0.91522 0.95213 0.91149 0.90582 0.95941 0.89684 0.94023 0.86530 0.86316 0.86306 0.86025 0.85723 0.89650 0.93981 0.86701 0.86138 0.86326 0.79423 0.91271 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.79 60.06 0.53 0.71 16 2 N -0.53 -5.90 4.74 -245.82 -1.17 -7.07 16 3 C 0.09 0.87 5.12 -4.97 -0.03 0.84 16 4 C -0.08 -0.76 4.88 -104.63 -0.51 -1.27 16 5 C -0.11 -1.03 7.97 -39.58 -0.32 -1.35 16 6 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 7 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 8 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 9 C -0.10 -0.99 9.70 -39.59 -0.38 -1.37 16 10 C 0.10 1.09 5.11 -4.97 -0.03 1.06 16 11 C -0.09 -1.22 4.88 -104.68 -0.51 -1.73 16 12 C -0.11 -1.41 7.91 -39.48 -0.31 -1.72 16 13 C -0.12 -1.65 10.03 -39.64 -0.40 -2.05 16 14 C -0.11 -1.76 9.54 -39.16 -0.37 -2.14 16 15 C -0.10 -1.86 5.87 -104.97 -0.62 -2.47 16 16 C 0.48 11.69 7.72 -12.38 -0.10 11.59 16 17 O -0.58 -16.32 15.92 5.29 0.08 -16.24 16 18 N -0.57 -14.19 5.03 -11.87 -0.06 -14.25 16 19 C -0.30 -8.54 10.16 -15.00 -0.15 -8.69 16 20 H 0.12 3.99 7.38 -52.49 -0.39 3.60 16 21 C 0.04 1.16 5.50 -17.45 -0.10 1.07 16 22 N -0.87 -25.00 13.95 55.50 0.77 -24.22 16 23 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 27 C -0.05 -0.88 9.24 -39.17 -0.36 -1.24 16 28 H 0.07 0.73 6.16 -51.92 -0.32 0.41 16 29 H 0.08 0.85 5.91 -51.93 -0.31 0.54 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 32 H 0.04 0.34 8.06 -51.93 -0.42 -0.08 16 33 H 0.12 0.88 8.02 -52.49 -0.42 0.46 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.04 0.40 8.06 -51.92 -0.42 -0.02 16 40 H 0.11 1.12 7.99 -52.49 -0.42 0.70 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.86 6.40 -52.49 -0.34 1.52 16 43 H 0.37 8.14 3.79 -40.82 -0.15 7.98 16 44 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.13 2.43 7.65 -52.49 -0.40 2.03 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -32.68 372.63 -10.42 -43.10 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.11 Total: 11.82 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -4.84 Total: -13.25 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.45 Total: -45.55 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.08 Total: -16.24 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.68 -10.42 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.509 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds