Wall clock time and date at job start Sat Apr 11 2020 01:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00198 * 2 1 4 4 C 1.50701 * 109.46874 * 293.95144 * 3 2 1 5 5 C 1.38235 * 119.99808 * 89.99842 * 4 3 2 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 9 9 C 1.38230 * 119.99865 * 269.97587 * 4 3 2 10 10 C 1.46899 * 110.99931 * 123.95184 * 2 1 3 11 11 C 1.50703 * 109.47337 * 66.04578 * 10 2 1 12 12 C 1.38400 * 119.92212 * 269.72880 * 11 10 2 13 13 C 1.38357 * 120.29752 * 179.76342 * 12 11 10 14 14 C 1.37960 * 120.15633 * 0.50816 * 13 12 11 15 15 C 1.39629 * 119.84081 * 359.74756 * 14 13 12 16 16 C 1.47730 * 120.14874 * 180.02562 * 15 14 13 17 17 O 1.21589 * 120.00324 * 179.97438 * 16 15 14 18 18 N 1.34783 * 119.99528 * 359.97438 * 16 15 14 19 19 C 1.36876 * 119.99434 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00321 * 0.02562 * 19 18 16 21 21 C 1.39051 * 119.99515 * 180.02562 * 19 18 16 22 22 N 1.31365 * 119.99659 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46902 * 89.99958 * 23 21 19 25 25 H 1.48491 * 109.47463 * 210.00370 * 23 21 19 26 26 H 1.48507 * 109.47124 * 330.00366 * 23 21 19 27 27 C 1.37915 * 119.92133 * 89.99996 * 11 10 2 28 28 H 1.09008 * 109.46783 * 60.00284 * 1 2 3 29 29 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47489 * 300.00174 * 1 2 3 31 31 H 1.08993 * 109.47642 * 173.94709 * 3 2 1 32 32 H 1.09001 * 109.46800 * 53.94480 * 3 2 1 33 33 H 1.08000 * 120.00616 * 359.70324 * 5 4 3 34 34 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.99666 * 179.97438 * 7 6 5 36 36 H 1.08000 * 119.99729 * 180.02562 * 8 7 6 37 37 H 1.08001 * 120.00371 * 0.02562 * 9 4 3 38 38 H 1.09002 * 109.47174 * 186.05147 * 10 2 1 39 39 H 1.09008 * 109.47008 * 306.04884 * 10 2 1 40 40 H 1.07991 * 119.84993 * 0.02562 * 12 11 10 41 41 H 1.07997 * 119.91986 * 180.25880 * 13 12 11 42 42 H 1.07997 * 120.08015 * 179.77077 * 14 13 12 43 43 H 0.96991 * 120.00246 * 0.02562 * 18 16 15 44 44 H 0.96995 * 119.99705 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.07689 * 359.95610 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 6 0.4512 2.7490 -1.4080 6 6 0.1226 3.3692 -2.5990 7 6 0.9789 3.2858 -3.6809 8 6 2.1651 2.5846 -3.5711 9 6 2.4942 1.9653 -2.3798 10 6 1.9954 -0.7659 1.1376 11 6 1.6369 -2.2204 0.9730 12 6 0.4519 -2.7033 1.5003 13 6 0.1127 -4.0362 1.3495 14 6 0.9598 -4.8955 0.6806 15 6 2.1594 -4.4160 0.1508 16 6 3.0712 -5.3300 -0.5672 17 8 4.1149 -4.9096 -1.0279 18 7 2.7461 -6.6301 -0.7114 19 6 3.5908 -7.4769 -1.3771 20 1 4.5178 -7.1034 -1.7863 21 6 3.2552 -8.8180 -1.5263 22 7 4.0660 -9.6308 -2.1647 23 14 1.6521 -9.4642 -0.8179 24 1 0.5759 -9.3384 -1.8334 25 1 1.8159 -10.8920 -0.4443 26 1 1.2900 -8.6756 0.3873 27 6 2.4930 -3.0683 0.3021 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.0796 1.3445 0.1084 32 1 1.5610 1.9274 0.8308 33 1 -0.2207 2.8093 -0.5646 34 1 -0.8041 3.9173 -2.6847 35 1 0.7220 3.7700 -4.6115 36 1 2.8343 2.5197 -4.4163 37 1 3.4206 1.4168 -2.2943 38 1 3.0797 -0.6610 1.1757 39 1 1.5609 -0.3872 2.0628 40 1 -0.2130 -2.0359 2.0282 41 1 -0.8155 -4.4056 1.7598 42 1 0.6956 -5.9364 0.5668 43 1 1.9134 -6.9654 -0.3442 44 1 3.8321 -10.5664 -2.2685 45 1 3.4191 -2.6909 -0.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:11 Heat of formation + Delta-G solvation = 4.565760 kcal Electronic energy + Delta-G solvation = -25851.980638 eV Core-core repulsion = 22219.374383 eV Total energy + Delta-G solvation = -3632.606255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10598 -40.36963 -39.45909 -37.71801 -36.20057 -34.07176 -33.35254 -31.98548 -31.81149 -31.59709 -28.34388 -27.60994 -27.01959 -24.25547 -23.95852 -23.36816 -22.32614 -21.67219 -21.19247 -20.38762 -18.16865 -17.59991 -17.34729 -16.75862 -16.65734 -16.60575 -16.33642 -16.02002 -15.67433 -15.59213 -15.21970 -15.08544 -14.74639 -14.60764 -14.27431 -14.21958 -13.77402 -13.63458 -13.48094 -13.29013 -13.01337 -12.91516 -12.77520 -12.53680 -12.49361 -12.38026 -12.00326 -11.98779 -11.80776 -11.68339 -11.63516 -10.63887 -10.37758 -9.87356 -9.83081 -9.76679 -9.60276 -9.17200 -8.51948 -6.10137 -0.02700 0.37071 0.51329 0.54274 1.24074 1.31930 1.39112 1.98207 2.15431 2.69387 2.79248 2.90951 3.19190 3.39333 3.74268 3.86026 3.91929 3.98561 4.02904 4.18880 4.20207 4.27768 4.31558 4.37904 4.42808 4.44429 4.62370 4.64661 4.67031 4.75116 4.78751 4.84132 4.95743 5.09462 5.11990 5.15379 5.19635 5.39485 5.45902 5.50057 5.58461 5.61571 5.66036 5.73712 5.85579 5.99264 6.08966 6.14446 6.17860 6.47392 6.74403 7.24900 7.81349 8.65028 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002555 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.204015 B =10955.626352 C =11750.438328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.552 5.552 3 C 0.097 3.903 4 C -0.087 4.087 5 C -0.117 4.117 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.135 4.135 9 C -0.120 4.120 10 C 0.101 3.899 11 C -0.082 4.082 12 C -0.089 4.089 13 C -0.113 4.113 14 C -0.108 4.108 15 C -0.131 4.131 16 C 0.477 3.523 17 O -0.630 6.630 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.059 0.941 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.958 3.042 24 H -0.251 1.251 25 H -0.264 1.264 26 H -0.233 1.233 27 C -0.066 4.066 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.127 0.873 43 H 0.389 0.611 44 H 0.284 0.716 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 25.100 8.924 31.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.276 5.276 3 C -0.030 4.030 4 C -0.088 4.088 5 C -0.136 4.136 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.153 4.153 9 C -0.138 4.138 10 C -0.026 4.026 11 C -0.083 4.083 12 C -0.107 4.107 13 C -0.131 4.131 14 C -0.128 4.128 15 C -0.134 4.134 16 C 0.267 3.733 17 O -0.518 6.518 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.077 0.923 21 C -0.209 4.209 22 N -0.559 5.559 23 Si 0.777 3.223 24 H -0.175 1.175 25 H -0.189 1.189 26 H -0.157 1.157 27 C -0.086 4.086 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.145 0.855 43 H 0.226 0.774 44 H 0.094 0.906 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.722 24.901 8.109 30.545 hybrid contribution 0.016 -0.765 0.214 0.795 sum -15.706 24.135 8.322 29.974 Atomic orbital electron populations 1.22525 0.86493 1.02482 1.01292 1.61866 1.09201 1.13134 1.43409 1.21057 1.00676 0.87383 0.93883 1.19872 0.95282 0.97894 0.95740 1.21271 0.96094 0.97519 0.98696 1.21439 1.00319 0.99833 0.93025 1.21448 0.94369 0.99290 0.99692 1.21403 0.97946 0.98132 0.97859 1.21216 1.00109 0.99036 0.93459 1.21018 1.00786 0.88327 0.92461 1.19789 0.94911 0.95463 0.98105 1.21534 0.95342 0.95858 0.97991 1.21395 1.00117 0.93248 0.98293 1.21506 0.92931 1.00751 0.97566 1.19965 0.96350 0.94723 1.02398 1.18657 0.87497 0.82614 0.84532 1.90585 1.28783 1.77102 1.55345 1.41937 1.20761 1.08005 1.50308 1.19084 1.03149 0.91101 1.33059 0.92325 1.26173 1.03029 0.94982 0.96753 1.69760 1.38990 1.06138 1.41054 0.85468 0.77248 0.79389 0.80192 1.17529 1.18881 1.15654 1.20995 0.99503 0.91512 0.96579 0.91675 0.91441 0.93533 0.90008 0.92114 0.84673 0.84002 0.84436 0.85310 0.86634 0.90145 0.91006 0.82299 0.81781 0.85527 0.77378 0.90614 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.79 127.69 1.12 1.45 16 2 N -0.55 -11.06 4.74 -931.63 -4.42 -15.48 16 3 C 0.10 1.63 5.12 85.56 0.44 2.07 16 4 C -0.09 -1.65 4.88 -19.87 -0.10 -1.74 16 5 C -0.12 -1.85 7.97 22.27 0.18 -1.67 16 6 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 7 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 8 C -0.14 -2.58 10.05 22.27 0.22 -2.36 16 9 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 10 C 0.10 1.95 5.11 85.56 0.44 2.39 16 11 C -0.08 -2.04 4.88 -19.90 -0.10 -2.14 16 12 C -0.09 -1.71 7.91 22.34 0.18 -1.54 16 13 C -0.11 -2.38 10.03 22.23 0.22 -2.16 16 14 C -0.11 -3.25 9.54 22.54 0.22 -3.03 16 15 C -0.13 -5.16 5.87 -20.09 -0.12 -5.28 16 16 C 0.48 24.81 7.72 86.75 0.67 25.48 16 17 O -0.63 -38.90 15.92 -4.00 -0.06 -38.97 16 18 N -0.57 -29.54 5.03 -309.72 -1.56 -31.10 16 19 C -0.33 -20.53 10.16 84.10 0.85 -19.67 16 20 H 0.06 4.24 7.38 -2.91 -0.02 4.22 16 21 C -0.01 -0.51 5.50 84.96 0.47 -0.04 16 22 N -0.92 -55.74 13.95 21.68 0.30 -55.44 16 23 Si 0.96 39.11 27.74 68.60 1.90 41.02 16 24 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 26 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 27 C -0.07 -2.32 9.24 22.54 0.21 -2.11 16 28 H 0.06 1.15 6.16 -2.38 -0.01 1.14 16 29 H 0.07 1.21 5.91 -2.39 -0.01 1.20 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 32 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 33 H 0.14 1.55 8.02 -2.91 -0.02 1.53 16 34 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.08 1.63 7.87 -2.39 -0.02 1.61 16 39 H 0.07 0.99 8.06 -2.38 -0.02 0.97 16 40 H 0.16 1.83 7.99 -2.92 -0.02 1.81 16 41 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.13 3.54 6.40 -2.91 -0.02 3.52 16 43 H 0.39 16.83 3.79 -92.71 -0.35 16.48 16 44 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.11 4.21 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -80.89 372.63 2.32 -78.57 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.59 Total: 37.65 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 5.57 Total: -16.25 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.68 Total: -102.02 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.06 Total: -38.97 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.02 kcal Total: -80.89 2.32 -78.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.137 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds