Wall clock time and date at job start Sat Apr 11 2020 01:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46690 * 2 1 4 4 C 1.52999 * 109.47163 * 239.99795 * 2 1 3 5 5 N 1.46496 * 109.46840 * 180.02562 * 4 2 1 6 6 C 1.34783 * 119.99680 * 180.02562 * 5 4 2 7 7 O 1.21587 * 119.99887 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00040 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46884 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46778 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47279 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00094 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00064 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99916 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47266 * 90.00230 * 16 14 12 18 18 H 1.48500 * 109.47038 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46775 * 329.99945 * 16 14 12 20 20 O 1.42898 * 109.47166 * 119.99495 * 2 1 3 21 21 C 1.35950 * 117.00545 * 275.35436 * 20 2 1 22 22 C 1.38711 * 120.02620 * 5.07379 * 21 20 2 23 23 C 1.38150 * 119.96846 * 179.79618 * 22 21 20 24 24 C 1.38465 * 120.02602 * 0.48736 * 23 22 21 25 25 F 1.35099 * 119.96607 * 179.72749 * 24 23 22 26 26 C 1.38454 * 120.06057 * 359.74257 * 24 23 22 27 27 C 1.38147 * 120.03286 * 0.02626 * 26 24 23 28 28 H 1.08993 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47317 * 300.00366 * 1 2 3 30 30 H 1.08996 * 109.47487 * 59.99884 * 1 2 3 31 31 H 1.08993 * 109.46979 * 300.00072 * 4 2 1 32 32 H 1.08996 * 109.46656 * 59.99813 * 4 2 1 33 33 H 0.96999 * 120.00425 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00084 * 359.97438 * 8 6 5 35 35 H 1.08992 * 109.46931 * 299.99295 * 9 8 6 36 36 H 1.08998 * 109.46887 * 59.99686 * 9 8 6 37 37 H 1.08992 * 109.47310 * 299.99999 * 10 9 8 38 38 H 1.08998 * 109.47373 * 60.00280 * 10 9 8 39 39 H 1.09002 * 109.47265 * 300.00071 * 11 10 9 40 40 H 1.08996 * 109.47623 * 59.99891 * 11 10 9 41 41 H 0.96998 * 119.99680 * 179.97438 * 15 14 12 42 42 H 1.07995 * 120.01459 * 0.02562 * 22 21 20 43 43 H 1.07991 * 119.98618 * 180.20828 * 23 22 21 44 44 H 1.07999 * 119.97829 * 180.02562 * 26 24 23 45 45 H 1.07995 * 120.01893 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7218 -1.2488 6 6 4.1789 -1.3051 -2.2599 7 8 3.5709 -1.8312 -3.1720 8 7 5.5266 -1.3060 -2.2593 9 6 6.2591 -1.9405 -3.3580 10 6 7.7634 -1.8013 -3.1155 11 6 8.5284 -2.4645 -4.2626 12 6 10.0100 -2.3269 -4.0241 13 1 10.3700 -1.8176 -3.1423 14 6 10.9059 -2.8519 -4.9311 15 7 10.4676 -3.4724 -6.0046 16 14 12.7426 -2.6819 -4.6351 17 1 13.2285 -3.8488 -3.8559 18 1 13.4511 -2.6276 -5.9390 19 1 13.0080 -1.4339 -3.8752 20 8 2.0063 -0.6735 1.1668 21 6 2.1055 0.0611 2.3064 22 6 1.6534 1.3723 2.3285 23 6 1.7510 2.1164 3.4884 24 6 2.3090 1.5571 4.6256 25 9 2.4088 2.2877 5.7576 26 6 2.7650 0.2500 4.6034 27 6 2.6643 -0.4979 3.4463 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2075 -2.1391 33 1 3.9900 -0.3024 -0.5210 34 1 6.0116 -0.8866 -1.5315 35 1 5.9952 -2.9968 -3.4084 36 1 5.9965 -1.4551 -4.2979 37 1 8.0271 -0.7449 -3.0653 38 1 8.0263 -2.2865 -2.1755 39 1 8.2646 -3.5210 -4.3123 40 1 8.2656 -1.9798 -5.2028 41 1 11.0979 -3.8414 -6.6428 42 1 1.2220 1.8100 1.4405 43 1 1.3960 3.1362 3.5069 44 1 3.1996 -0.1850 5.4912 45 1 3.0204 -1.5172 3.4291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176386966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:22 Heat of formation + Delta-G solvation = -104.795483 kcal Electronic energy + Delta-G solvation = -25882.476191 eV Core-core repulsion = 21814.358452 eV Total energy + Delta-G solvation = -4068.117739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.22127 -40.89066 -39.74567 -38.02269 -35.67935 -34.80093 -33.33499 -32.54804 -31.58338 -30.94929 -29.70773 -27.29753 -25.87616 -24.13142 -23.17598 -22.85801 -21.50651 -20.83355 -20.35486 -18.98823 -18.19180 -17.79547 -17.11648 -16.57286 -16.19484 -15.99575 -15.76298 -15.51720 -15.25893 -14.94423 -14.50521 -14.39655 -14.22201 -14.00788 -13.92506 -13.69123 -13.27474 -13.16312 -12.90838 -12.70065 -12.55515 -12.27367 -11.80545 -11.71092 -11.65058 -11.35145 -11.15090 -10.89804 -10.71415 -10.58698 -10.13638 -9.84956 -9.69964 -9.43718 -9.25693 -9.11717 -8.60877 -8.57805 -8.36416 -6.01043 -4.04049 0.64187 0.72665 2.55503 2.76477 3.07353 3.31282 3.36142 3.37618 3.40404 3.84738 4.06060 4.20640 4.24341 4.28010 4.41607 4.45187 4.55225 4.62541 4.78368 4.95671 5.09802 5.14015 5.31073 5.34677 5.41421 5.44938 5.57229 5.62606 5.66785 5.71544 5.74084 5.82663 6.19158 6.20741 6.34936 6.53397 6.63538 6.79867 6.86129 7.03120 7.05448 7.64791 7.77693 7.97943 8.12875 8.38896 8.73404 9.02628 9.59991 11.10210 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.001901 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.009819 B =14728.808918 C =16347.398489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 H 0.082 0.918 4 C 0.146 3.854 5 N -0.750 5.750 6 C 0.701 3.299 7 O -0.593 6.593 8 N -0.741 5.741 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.301 6.301 21 C 0.124 3.876 22 C -0.184 4.184 23 C -0.112 4.112 24 C 0.057 3.943 25 F -0.142 7.142 26 C -0.112 4.112 27 C -0.123 4.123 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.615 11.402 20.580 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 H 0.100 0.900 4 C 0.022 3.978 5 N -0.407 5.407 6 C 0.401 3.599 7 O -0.472 6.472 8 N -0.395 5.395 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.215 6.215 21 C 0.079 3.921 22 C -0.203 4.203 23 C -0.131 4.131 24 C 0.038 3.962 25 F -0.121 7.121 26 C -0.131 4.131 27 C -0.141 4.141 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.068 10.625 19.529 32.037 hybrid contribution 1.420 0.801 0.964 1.895 sum -21.648 11.427 20.493 31.924 Atomic orbital electron populations 1.22319 0.93560 1.04291 1.03504 1.22815 0.95299 0.96993 0.83557 0.90028 1.21250 0.79757 1.01999 0.94822 1.44974 1.06465 1.63313 1.25946 1.15975 0.82190 0.79400 0.82341 1.90923 1.67996 1.50988 1.37263 1.45380 1.04172 1.62102 1.27830 1.21518 0.92059 0.97278 0.87964 1.21890 0.91056 1.01124 1.01771 1.19030 0.94166 0.95905 0.92306 1.21202 0.91301 1.36303 1.07211 0.92667 1.25036 0.99022 0.95284 0.95183 1.69966 1.34478 1.37462 1.11336 0.86580 0.85370 0.78439 0.77507 1.20665 1.21220 1.19918 1.86228 1.80867 1.38118 1.16241 1.19037 0.95623 0.90262 0.87209 1.21192 1.05628 0.94019 0.99436 1.20956 0.99703 1.00920 0.91531 1.17607 1.04583 0.90749 0.83310 1.91500 1.94503 1.77043 1.49021 1.21001 1.00345 0.92534 0.99179 1.20345 1.02102 1.01464 0.90218 0.90672 0.91297 0.90215 0.90411 0.89461 0.77043 0.77304 0.91923 0.91942 0.92779 0.92761 0.96226 0.96231 0.92939 0.84226 0.84478 0.83990 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 9.17 37.16 0.34 -0.48 16 2 C 0.07 0.42 2.31 -26.73 -0.06 0.36 16 3 H 0.08 0.39 6.31 -51.93 -0.33 0.07 16 4 C 0.15 1.28 5.37 -4.04 -0.02 1.25 16 5 N -0.75 -7.92 5.45 -65.23 -0.36 -8.27 16 6 C 0.70 10.61 8.57 -86.92 -0.74 9.86 16 7 O -0.59 -11.51 16.34 5.29 0.09 -11.42 16 8 N -0.74 -10.77 5.56 -65.22 -0.36 -11.13 16 9 C 0.13 2.41 5.67 -4.04 -0.02 2.39 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 O -0.30 -2.35 9.54 -19.58 -0.19 -2.53 16 21 C 0.12 0.91 6.60 -39.23 -0.26 0.65 16 22 C -0.18 -1.13 8.23 -39.44 -0.32 -1.45 16 23 C -0.11 -0.73 10.02 -39.53 -0.40 -1.12 16 24 C 0.06 0.44 7.30 -39.42 -0.29 0.15 16 25 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 26 C -0.11 -0.76 10.02 -39.54 -0.40 -1.16 16 27 C -0.12 -0.86 9.98 -39.44 -0.39 -1.26 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.29 6.90 -51.92 -0.36 -0.07 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.31 8.36 -40.82 -0.34 2.97 16 34 H 0.39 4.59 8.49 -40.82 -0.35 4.24 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.14 0.60 5.42 -52.49 -0.28 0.31 16 43 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -34.12 383.49 -9.24 -43.36 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.70 Total: 1.29 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.26 Total: -6.24 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.02 Total: -45.52 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.10 Total: -13.95 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.12 -9.24 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176386966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.440 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds