Wall clock time and date at job start Sat Apr 11 2020 01:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46690 * 2 1 4 4 C 1.52999 * 109.47163 * 239.99795 * 2 1 3 5 5 N 1.46496 * 109.46840 * 180.02562 * 4 2 1 6 6 C 1.34783 * 119.99680 * 180.02562 * 5 4 2 7 7 O 1.21587 * 119.99887 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00040 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46884 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46778 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47279 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00094 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00064 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99916 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47266 * 90.00230 * 16 14 12 18 18 H 1.48500 * 109.47038 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46775 * 329.99945 * 16 14 12 20 20 O 1.42898 * 109.47166 * 119.99495 * 2 1 3 21 21 C 1.35950 * 117.00545 * 275.35436 * 20 2 1 22 22 C 1.38711 * 120.02620 * 5.07379 * 21 20 2 23 23 C 1.38150 * 119.96846 * 179.79618 * 22 21 20 24 24 C 1.38465 * 120.02602 * 0.48736 * 23 22 21 25 25 F 1.35099 * 119.96607 * 179.72749 * 24 23 22 26 26 C 1.38454 * 120.06057 * 359.74257 * 24 23 22 27 27 C 1.38147 * 120.03286 * 0.02626 * 26 24 23 28 28 H 1.08993 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47317 * 300.00366 * 1 2 3 30 30 H 1.08996 * 109.47487 * 59.99884 * 1 2 3 31 31 H 1.08993 * 109.46979 * 300.00072 * 4 2 1 32 32 H 1.08996 * 109.46656 * 59.99813 * 4 2 1 33 33 H 0.96999 * 120.00425 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00084 * 359.97438 * 8 6 5 35 35 H 1.08992 * 109.46931 * 299.99295 * 9 8 6 36 36 H 1.08998 * 109.46887 * 59.99686 * 9 8 6 37 37 H 1.08992 * 109.47310 * 299.99999 * 10 9 8 38 38 H 1.08998 * 109.47373 * 60.00280 * 10 9 8 39 39 H 1.09002 * 109.47265 * 300.00071 * 11 10 9 40 40 H 1.08996 * 109.47623 * 59.99891 * 11 10 9 41 41 H 0.96998 * 119.99680 * 179.97438 * 15 14 12 42 42 H 1.07995 * 120.01459 * 0.02562 * 22 21 20 43 43 H 1.07991 * 119.98618 * 180.20828 * 23 22 21 44 44 H 1.07999 * 119.97829 * 180.02562 * 26 24 23 45 45 H 1.07995 * 120.01893 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7218 -1.2488 6 6 4.1789 -1.3051 -2.2599 7 8 3.5709 -1.8312 -3.1720 8 7 5.5266 -1.3060 -2.2593 9 6 6.2591 -1.9405 -3.3580 10 6 7.7634 -1.8013 -3.1155 11 6 8.5284 -2.4645 -4.2626 12 6 10.0100 -2.3269 -4.0241 13 1 10.3700 -1.8176 -3.1423 14 6 10.9059 -2.8519 -4.9311 15 7 10.4676 -3.4724 -6.0046 16 14 12.7426 -2.6819 -4.6351 17 1 13.2285 -3.8488 -3.8559 18 1 13.4511 -2.6276 -5.9390 19 1 13.0080 -1.4339 -3.8752 20 8 2.0063 -0.6735 1.1668 21 6 2.1055 0.0611 2.3064 22 6 1.6534 1.3723 2.3285 23 6 1.7510 2.1164 3.4884 24 6 2.3090 1.5571 4.6256 25 9 2.4088 2.2877 5.7576 26 6 2.7650 0.2500 4.6034 27 6 2.6643 -0.4979 3.4463 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2075 -2.1391 33 1 3.9900 -0.3024 -0.5210 34 1 6.0116 -0.8866 -1.5315 35 1 5.9952 -2.9968 -3.4084 36 1 5.9965 -1.4551 -4.2979 37 1 8.0271 -0.7449 -3.0653 38 1 8.0263 -2.2865 -2.1755 39 1 8.2646 -3.5210 -4.3123 40 1 8.2656 -1.9798 -5.2028 41 1 11.0979 -3.8414 -6.6428 42 1 1.2220 1.8100 1.4405 43 1 1.3960 3.1362 3.5069 44 1 3.1996 -0.1850 5.4912 45 1 3.0204 -1.5172 3.4291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176386966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:22 Heat of formation + Delta-G solvation = -127.147887 kcal Electronic energy + Delta-G solvation = -25883.445464 eV Core-core repulsion = 21814.358452 eV Total energy + Delta-G solvation = -4069.087012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.81641 -41.48978 -40.84954 -38.58831 -37.07262 -35.85388 -35.17727 -33.45771 -32.64320 -31.96877 -30.20740 -28.78059 -27.01467 -24.82672 -24.55108 -23.58122 -22.29824 -22.07620 -21.80111 -19.49990 -19.26983 -18.55801 -18.36545 -17.74841 -17.25053 -16.87702 -16.62972 -16.50055 -16.22845 -15.87828 -15.79189 -15.61966 -15.25511 -14.95381 -14.58592 -14.41324 -14.25599 -13.88966 -13.72974 -13.69695 -13.64903 -13.35060 -13.21179 -12.96215 -12.73873 -12.53442 -12.35895 -12.16622 -11.88587 -11.66156 -11.65003 -11.62125 -11.30203 -11.13459 -10.54247 -10.40802 -10.17393 -9.77680 -9.10829 -8.18343 -6.29670 0.16663 0.20380 1.42390 1.43803 1.54621 1.68082 2.05353 2.15715 2.42784 2.57439 3.15300 3.29595 3.34106 3.54328 3.76745 3.77780 3.93217 4.03985 4.16613 4.18461 4.25093 4.31659 4.45997 4.57966 4.60401 4.68717 4.82901 4.84972 4.94289 4.97732 5.01061 5.12858 5.17136 5.18331 5.21547 5.26985 5.43370 5.48423 5.55698 5.70954 5.72810 5.85712 5.97514 6.23986 6.36429 6.87571 7.08520 7.39683 7.56840 8.93696 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.001901 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.009819 B =14728.808918 C =16347.398489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.731 5.731 6 C 0.698 3.302 7 O -0.639 6.639 8 N -0.731 5.731 9 C 0.150 3.850 10 C -0.100 4.100 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.066 0.934 14 C -0.005 4.005 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.260 1.260 20 O -0.316 6.316 21 C 0.116 3.884 22 C -0.181 4.181 23 C -0.113 4.113 24 C 0.036 3.964 25 F -0.152 7.152 26 C -0.114 4.114 27 C -0.133 4.133 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.067 0.933 39 H -0.008 1.008 40 H -0.007 1.007 41 H 0.263 0.737 42 H 0.161 0.839 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.512 13.079 22.221 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 H 0.119 0.881 4 C 0.019 3.981 5 N -0.387 5.387 6 C 0.398 3.602 7 O -0.521 6.521 8 N -0.386 5.386 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.184 1.184 20 O -0.230 6.230 21 C 0.071 3.929 22 C -0.199 4.199 23 C -0.131 4.131 24 C 0.017 3.983 25 F -0.131 7.131 26 C -0.133 4.133 27 C -0.151 4.151 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.246 0.754 34 H 0.247 0.753 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.179 0.821 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.974 12.343 21.245 33.638 hybrid contribution 1.320 0.266 0.460 1.423 sum -21.655 12.609 21.705 33.152 Atomic orbital electron populations 1.22317 0.92234 1.04152 1.04681 1.22825 0.96148 0.97175 0.81857 0.88052 1.21407 0.78337 1.01695 0.96708 1.44837 1.07278 1.61777 1.24835 1.16134 0.82090 0.79323 0.82670 1.90897 1.68863 1.53032 1.39318 1.45033 1.04189 1.61930 1.27466 1.21075 0.91347 0.96480 0.88587 1.21586 0.91229 1.01320 0.99702 1.18949 0.94439 0.94573 0.93530 1.21676 0.92527 1.36077 1.07513 0.91552 1.26035 1.04464 0.94870 0.94865 1.70112 1.36328 1.38581 1.12454 0.85410 0.78841 0.79035 0.77521 1.19863 1.21062 1.18431 1.86205 1.81174 1.38863 1.16734 1.19174 0.95939 0.90775 0.87047 1.21388 1.05044 0.93446 1.00017 1.21192 0.99056 1.01758 0.91139 1.17885 1.05706 0.91215 0.83516 1.91470 1.94703 1.77306 1.49649 1.21156 1.00109 0.92367 0.99647 1.20484 1.02427 1.01843 0.90390 0.91549 0.90423 0.88687 0.91981 0.88937 0.75398 0.75270 0.93590 0.93355 0.91326 0.91466 0.98948 0.98840 0.92839 0.82147 0.82807 0.82816 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.17 71.98 0.66 -0.55 16 2 C 0.08 0.75 2.31 30.59 0.07 0.82 16 3 H 0.10 0.63 6.31 -2.39 -0.02 0.61 16 4 C 0.14 2.28 5.37 86.38 0.46 2.75 16 5 N -0.73 -14.22 5.45 -478.55 -2.61 -16.83 16 6 C 0.70 20.55 8.57 179.05 1.53 22.08 16 7 O -0.64 -24.95 16.34 -3.99 -0.07 -25.02 16 8 N -0.73 -20.37 5.56 -478.53 -2.66 -23.03 16 9 C 0.15 5.36 5.67 86.38 0.49 5.85 16 10 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 11 C 0.02 1.19 4.97 29.85 0.15 1.34 16 12 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 13 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 15 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 16 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 O -0.32 -4.33 9.54 -92.99 -0.89 -5.22 16 21 C 0.12 1.47 6.60 22.49 0.15 1.62 16 22 C -0.18 -1.75 8.23 22.36 0.18 -1.57 16 23 C -0.11 -1.24 10.02 22.30 0.22 -1.01 16 24 C 0.04 0.51 7.30 22.38 0.16 0.68 16 25 F -0.15 -2.58 17.27 44.97 0.78 -1.80 16 26 C -0.11 -1.44 10.02 22.30 0.22 -1.22 16 27 C -0.13 -1.71 9.98 22.36 0.22 -1.48 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.43 6.90 -2.38 -0.02 0.42 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.41 5.84 8.36 -92.71 -0.78 5.07 16 34 H 0.41 8.61 8.49 -92.71 -0.79 7.83 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.16 0.80 5.42 -2.91 -0.02 0.78 16 43 H 0.15 1.09 8.06 -2.92 -0.02 1.06 16 44 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -74.72 383.49 1.71 -73.02 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.55 Total: 14.04 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.39 Total: -4.11 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.98 Total: -96.75 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.95 Total: -30.24 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.72 1.71 -73.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176386966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.133 kcal (2) G-P(sol) polarization free energy of solvation -74.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds