Wall clock time and date at job start Sat Apr 11 2020 01:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47046 * 119.99539 * 2 1 3 5 5 N 1.46506 * 109.47099 * 185.00215 * 4 2 1 6 6 C 1.34768 * 120.00173 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99984 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00495 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00583 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47223 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47079 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47151 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00234 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99900 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47590 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46787 * 119.99891 * 16 14 12 19 19 H 1.48498 * 109.47455 * 239.99441 * 16 14 12 20 20 O 1.42898 * 109.47531 * 239.99976 * 2 1 3 21 21 C 1.35957 * 117.00074 * 84.97553 * 20 2 1 22 22 C 1.38653 * 120.06091 * 354.52245 * 21 20 2 23 23 C 1.38189 * 119.96801 * 179.71772 * 22 21 20 24 24 C 1.38256 * 120.09290 * 0.55049 * 23 22 21 25 25 C 1.38258 * 120.12511 * 359.72825 * 24 23 22 26 26 C 1.38328 * 120.03189 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.04987 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47094 * 60.00246 * 1 2 3 29 29 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47294 * 299.99844 * 1 2 3 31 31 H 1.08997 * 109.47246 * 305.00360 * 4 2 1 32 32 H 1.08997 * 109.46994 * 65.00745 * 4 2 1 33 33 H 0.97001 * 119.99687 * 359.97438 * 5 4 2 34 34 H 0.97009 * 119.99347 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46588 * 300.00106 * 9 8 6 36 36 H 1.08996 * 109.46944 * 60.00100 * 9 8 6 37 37 H 1.09000 * 109.47058 * 299.99928 * 10 9 8 38 38 H 1.09005 * 109.47107 * 60.00102 * 10 9 8 39 39 H 1.09000 * 109.47273 * 299.99988 * 11 10 9 40 40 H 1.09005 * 109.46911 * 60.00174 * 11 10 9 41 41 H 0.96998 * 119.99608 * 180.02562 * 15 14 12 42 42 H 1.08000 * 120.02157 * 359.96723 * 22 21 20 43 43 H 1.07996 * 119.95299 * 180.26954 * 23 22 21 44 44 H 1.08003 * 119.93912 * 179.74448 * 24 23 22 45 45 H 1.08002 * 119.98242 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.6177 1.3111 6 6 4.1731 -1.1832 2.3326 7 8 3.5686 -1.7796 3.2028 8 7 5.5162 -1.0877 2.3897 9 6 6.2478 -1.7019 3.5005 10 6 7.7466 -1.4489 3.3259 11 6 8.5105 -2.0899 4.4862 12 6 9.9868 -1.8402 4.3146 13 1 10.3444 -1.2807 3.4628 14 6 10.8810 -2.3269 5.2445 15 7 10.4456 -3.0086 6.2814 16 14 12.7109 -2.0180 5.0313 17 1 12.9393 -1.2323 3.7920 18 1 13.2243 -1.2597 6.2004 19 1 13.4239 -3.3168 4.9318 20 8 2.0064 -0.6736 -1.1667 21 6 2.1122 0.0628 -2.3047 22 6 1.6590 1.3729 -2.3288 23 6 1.7728 2.1215 -3.4848 24 6 2.3276 1.5624 -4.6210 25 6 2.7754 0.2545 -4.6030 26 6 2.6697 -0.4977 -3.4469 27 9 3.1077 -1.7756 -3.4287 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 1.7517 -1.7714 1.2057 33 1 3.9824 -0.1429 0.6163 34 1 5.9986 -0.6121 1.6953 35 1 5.9125 -1.2659 4.4415 36 1 6.0596 -2.7754 3.5100 37 1 8.0815 -1.8853 2.3848 38 1 7.9352 -0.3754 3.3161 39 1 8.1756 -1.6532 5.4271 40 1 8.3220 -3.1634 4.4964 41 1 11.0747 -3.3507 6.9357 42 1 1.2210 1.8095 -1.4434 43 1 1.4237 3.1434 -3.5020 44 1 2.4115 2.1484 -5.5243 45 1 3.2081 -0.1802 -5.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176388882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:24 Heat of formation + Delta-G solvation = -126.943691 kcal Electronic energy + Delta-G solvation = -26218.569946 eV Core-core repulsion = 22149.491789 eV Total energy + Delta-G solvation = -4069.078158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.81955 -41.46122 -40.85049 -38.72507 -37.11729 -35.94414 -35.19760 -33.46606 -32.57174 -31.62861 -30.55181 -28.80830 -27.06113 -24.88042 -24.53552 -23.46302 -22.32741 -22.13167 -21.83493 -19.62910 -19.31541 -18.57037 -18.11704 -17.68594 -17.35165 -16.92273 -16.90207 -16.50900 -16.19693 -15.87486 -15.75234 -15.62453 -15.39232 -15.25427 -14.71375 -14.29595 -14.27756 -13.82521 -13.74298 -13.68611 -13.40836 -13.28487 -13.12280 -12.77580 -12.74839 -12.55203 -12.34272 -12.18866 -12.09437 -11.79618 -11.68108 -11.67288 -11.32227 -11.14353 -10.56090 -10.45156 -9.91611 -9.82140 -9.21200 -8.19518 -6.30911 0.14569 0.28269 1.41508 1.41987 1.55092 1.64293 1.96354 2.11112 2.41935 2.62733 3.14163 3.24945 3.26268 3.49595 3.77777 3.87869 3.95685 4.02337 4.15858 4.22417 4.25510 4.34422 4.41893 4.55622 4.56265 4.63476 4.79358 4.81455 4.95399 4.98146 5.00237 5.12733 5.16168 5.19996 5.28442 5.38553 5.45697 5.46089 5.53524 5.70946 5.72615 5.84295 5.92323 6.22681 6.30715 6.86327 7.03432 7.38493 7.52265 8.92862 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.002001 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.549403 B =13986.398477 C =15141.716200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.106 0.894 4 C 0.142 3.858 5 N -0.732 5.732 6 C 0.698 3.302 7 O -0.638 6.638 8 N -0.731 5.731 9 C 0.150 3.850 10 C -0.100 4.100 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.066 0.934 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.280 1.280 20 O -0.323 6.323 21 C 0.084 3.916 22 C -0.185 4.185 23 C -0.084 4.084 24 C -0.128 4.128 25 C -0.121 4.121 26 C 0.027 3.973 27 F -0.155 7.155 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.411 0.589 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.069 0.931 39 H -0.006 1.006 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.048 15.614 -24.628 37.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 H 0.123 0.877 4 C 0.018 3.982 5 N -0.389 5.389 6 C 0.398 3.602 7 O -0.520 6.520 8 N -0.386 5.386 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.206 1.206 20 O -0.238 6.238 21 C 0.038 3.962 22 C -0.203 4.203 23 C -0.102 4.102 24 C -0.146 4.146 25 C -0.140 4.140 26 C 0.008 3.992 27 F -0.134 7.134 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.247 0.753 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.179 0.821 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.496 14.728 -23.646 36.444 hybrid contribution 1.446 -0.388 -0.058 1.498 sum -22.050 14.340 -23.704 35.408 Atomic orbital electron populations 1.22310 0.91946 1.04033 1.04920 1.22874 0.96341 0.97226 0.81537 0.87672 1.21411 0.78578 1.01437 0.96786 1.44875 1.07823 1.59829 1.26343 1.16127 0.82101 0.79598 0.82376 1.90893 1.68884 1.49876 1.42348 1.45045 1.04639 1.59914 1.29022 1.21088 0.91442 0.96688 0.88281 1.21589 0.91235 1.01301 0.99708 1.18951 0.94494 0.94632 0.93397 1.21701 0.92876 1.34396 1.08758 0.91567 1.26047 1.04472 0.94857 0.94894 1.70122 1.36385 1.37768 1.13255 0.85345 0.78831 0.77997 0.78526 1.18221 1.20470 1.20632 1.86236 1.81559 1.38982 1.17025 1.19231 0.98462 0.92329 0.86222 1.21527 1.04826 0.91998 1.01961 1.21486 0.96224 1.01126 0.91321 1.21352 0.98996 0.93811 1.00415 1.21332 1.00885 0.95514 0.96238 1.17579 1.05957 0.80561 0.95136 1.91460 1.88010 1.36805 1.97168 0.90185 0.91909 0.88284 0.88432 0.92433 0.75560 0.75315 0.93164 0.93712 0.91614 0.91208 0.98751 0.99015 0.92812 0.82206 0.81905 0.82051 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.17 71.98 0.66 -0.84 16 2 C 0.08 0.95 2.26 30.59 0.07 1.02 16 3 H 0.11 0.82 6.31 -2.39 -0.02 0.81 16 4 C 0.14 2.64 5.34 86.38 0.46 3.11 16 5 N -0.73 -16.13 5.51 -478.54 -2.64 -18.76 16 6 C 0.70 22.02 8.57 179.06 1.53 23.55 16 7 O -0.64 -26.08 16.34 -4.00 -0.07 -26.15 16 8 N -0.73 -21.71 5.56 -478.55 -2.66 -24.37 16 9 C 0.15 5.57 5.67 86.38 0.49 6.06 16 10 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 11 C 0.02 1.22 4.97 29.85 0.15 1.37 16 12 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 13 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 14 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 15 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 16 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 O -0.32 -6.10 9.61 -93.07 -0.89 -7.00 16 21 C 0.08 1.39 6.61 22.53 0.15 1.54 16 22 C -0.18 -1.79 8.24 22.36 0.18 -1.60 16 23 C -0.08 -0.56 10.04 22.26 0.22 -0.33 16 24 C -0.13 -0.99 10.04 22.28 0.22 -0.76 16 25 C -0.12 -1.55 10.02 22.30 0.22 -1.33 16 26 C 0.03 0.52 7.31 22.45 0.16 0.69 16 27 F -0.16 -3.92 17.11 44.97 0.77 -3.15 16 28 H 0.08 0.54 6.91 -2.39 -0.02 0.52 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.41 6.94 8.49 -92.71 -0.79 6.15 16 34 H 0.41 9.39 8.49 -92.70 -0.79 8.61 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.16 0.78 5.43 -2.91 -0.02 0.77 16 43 H 0.16 0.08 8.06 -2.91 -0.02 0.05 16 44 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 45 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -79.12 383.63 1.65 -77.47 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.56 Total: 14.57 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.39 Total: -1.47 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -5.01 Total: -100.59 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.96 Total: -33.14 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.77 Total: -3.15 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -79.12 1.65 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176388882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.476 kcal (2) G-P(sol) polarization free energy of solvation -79.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds