Wall clock time and date at job start Sat Apr 11 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08989 * 109.46952 * 2 1 4 4 C 1.53004 * 109.46819 * 119.99747 * 2 1 3 5 5 N 1.46494 * 109.46845 * 184.99467 * 4 2 1 6 6 C 1.34784 * 119.99683 * 179.97438 * 5 4 2 7 7 O 1.21578 * 120.00074 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99537 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99564 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46993 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47210 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47358 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99875 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99957 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99646 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47454 * 60.00126 * 16 14 12 18 18 H 1.48508 * 109.46880 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47180 * 299.99669 * 16 14 12 20 20 O 1.42901 * 109.46818 * 239.99509 * 2 1 3 21 21 C 1.35894 * 116.99907 * 84.66512 * 20 2 1 22 22 C 1.38768 * 120.04313 * 174.63768 * 21 20 2 23 23 C 1.38135 * 119.99473 * 179.70272 * 22 21 20 24 24 C 1.38251 * 120.07916 * 0.25944 * 23 22 21 25 25 C 1.38474 * 120.08857 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.00120 * 180.02562 * 25 24 23 27 27 C 1.38385 * 119.99956 * 359.97438 * 25 24 23 28 28 H 1.09007 * 109.46796 * 60.00141 * 1 2 3 29 29 H 1.08995 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46935 * 300.00606 * 1 2 3 31 31 H 1.09002 * 109.46998 * 305.00065 * 4 2 1 32 32 H 1.08999 * 109.47021 * 64.99592 * 4 2 1 33 33 H 0.96996 * 120.00552 * 0.02562 * 5 4 2 34 34 H 0.96993 * 120.00151 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.46982 * 299.99798 * 9 8 6 36 36 H 1.08992 * 109.47241 * 60.00097 * 9 8 6 37 37 H 1.08998 * 109.47088 * 300.00173 * 10 9 8 38 38 H 1.09001 * 109.46942 * 59.99916 * 10 9 8 39 39 H 1.08998 * 109.47439 * 300.00206 * 11 10 9 40 40 H 1.09001 * 109.47034 * 60.00220 * 11 10 9 41 41 H 0.96998 * 119.99735 * 180.02562 * 15 14 12 42 42 H 1.07999 * 120.00127 * 359.97438 * 22 21 20 43 43 H 1.08005 * 119.95958 * 180.27902 * 23 22 21 44 44 H 1.08002 * 119.95386 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.03627 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.6180 1.3110 6 6 4.1729 -1.1827 2.3332 7 8 3.5683 -1.7782 3.2038 8 7 5.5161 -1.0872 2.3901 9 6 6.2476 -1.7016 3.5009 10 6 7.7463 -1.4477 3.3269 11 6 8.5102 -2.0887 4.4873 12 6 9.9864 -1.8381 4.3163 13 1 10.3439 -1.2774 3.4654 14 6 10.8805 -2.3248 5.2462 15 7 10.4451 -3.0072 6.2827 16 14 12.7103 -2.0148 5.0338 17 1 12.9664 -0.5521 5.0211 18 1 13.4518 -2.6369 6.1601 19 1 13.1674 -2.6085 3.7517 20 8 2.0063 -0.6738 -1.1667 21 6 2.1058 0.0606 -2.3058 22 6 2.6648 -0.4984 -3.4463 23 6 2.7598 0.2470 -4.6054 24 6 2.3034 1.5518 -4.6295 25 6 1.7504 2.1149 -3.4917 26 9 1.3045 3.3899 -3.5173 27 6 1.6535 1.3713 -2.3286 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 1.7515 -1.7715 1.2057 33 1 3.9824 -0.1426 0.6166 34 1 5.9984 -0.6118 1.6958 35 1 5.9124 -1.2655 4.4420 36 1 6.0593 -2.7750 3.5104 37 1 8.0818 -1.8834 2.3858 38 1 7.9343 -0.3741 3.3177 39 1 8.1747 -1.6527 5.4282 40 1 8.3223 -3.1624 4.4969 41 1 11.0741 -3.3492 6.9371 42 1 3.0215 -1.5176 -3.4289 43 1 3.1909 -0.1902 -5.4940 44 1 2.3791 2.1329 -5.5367 45 1 1.2227 1.8101 -1.4407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176391387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:29 Heat of formation + Delta-G solvation = -105.170370 kcal Electronic energy + Delta-G solvation = -25972.612963 eV Core-core repulsion = 21904.478967 eV Total energy + Delta-G solvation = -4068.133996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.37292 -40.88761 -39.74884 -38.07424 -35.69729 -34.82361 -33.33249 -32.47438 -31.23668 -30.94300 -30.11216 -27.30342 -25.88982 -24.06320 -23.09073 -22.87951 -21.58536 -20.83737 -20.35812 -19.18459 -18.18105 -17.24976 -16.80295 -16.62936 -16.39302 -16.19473 -16.04045 -15.55723 -15.47750 -14.91383 -14.70475 -14.46771 -14.29890 -14.08309 -13.91964 -13.59770 -13.25233 -12.92492 -12.79517 -12.65545 -12.26633 -12.21632 -11.81717 -11.79063 -11.69330 -11.46865 -11.31431 -10.87699 -10.71033 -10.61407 -10.13723 -9.84496 -9.44379 -9.43102 -9.26266 -9.12718 -8.76976 -8.61053 -8.35938 -6.00698 -4.03829 0.62954 0.77074 2.53587 2.74636 3.09033 3.32636 3.35962 3.37358 3.39298 3.71186 4.09347 4.20783 4.27531 4.38162 4.45008 4.47866 4.52462 4.56490 4.76965 4.94068 5.09499 5.14284 5.31896 5.34861 5.43337 5.51767 5.55907 5.58139 5.70827 5.73272 5.82735 5.83547 6.19073 6.19687 6.34211 6.53364 6.63619 6.79640 6.83479 7.03181 7.05024 7.64722 7.77887 7.98142 8.12472 8.39037 8.73163 9.02623 9.60123 11.10520 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.001888 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.162258 B =14827.171144 C =15990.269191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 H 0.082 0.918 4 C 0.146 3.854 5 N -0.751 5.751 6 C 0.701 3.299 7 O -0.593 6.593 8 N -0.741 5.741 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 O -0.298 6.298 21 C 0.163 3.837 22 C -0.162 4.162 23 C -0.050 4.050 24 C -0.195 4.195 25 C 0.138 3.862 26 F -0.137 7.137 27 C -0.251 4.251 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.965 9.655 -22.466 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 H 0.100 0.900 4 C 0.022 3.978 5 N -0.408 5.408 6 C 0.401 3.599 7 O -0.471 6.471 8 N -0.395 5.395 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 O -0.211 6.211 21 C 0.117 3.883 22 C -0.181 4.181 23 C -0.068 4.068 24 C -0.214 4.214 25 C 0.119 3.881 26 F -0.116 7.116 27 C -0.270 4.270 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.439 8.827 -21.401 32.240 hybrid contribution 1.306 1.076 -0.666 1.819 sum -21.133 9.903 -22.067 32.119 Atomic orbital electron populations 1.22318 0.93445 1.04308 1.03588 1.22840 0.95392 0.97037 0.83515 0.89974 1.21242 0.79876 1.01980 0.94726 1.45004 1.07003 1.61208 1.27577 1.15970 0.82159 0.79751 0.82003 1.90922 1.67996 1.47897 1.40294 1.45380 1.04664 1.60011 1.29427 1.21519 0.92103 0.97581 0.87622 1.21891 0.91127 1.00982 1.01841 1.19025 0.94158 0.96055 0.92127 1.21164 0.91720 1.34649 1.08563 0.92720 1.25034 0.98994 0.95195 0.95280 1.69957 1.34694 1.36437 1.12163 0.86638 0.85184 0.78429 0.77605 1.20270 1.21282 1.20252 1.86246 1.80573 1.38011 1.16275 1.18735 0.93392 0.89092 0.87107 1.20591 1.04378 1.02042 0.91050 1.20854 0.95812 0.92610 0.97543 1.21090 1.04857 0.97223 0.98183 1.17409 0.97044 0.79170 0.94478 1.91519 1.86859 1.36089 1.97090 1.21246 1.10819 0.95416 0.99555 0.91303 0.90599 0.90154 0.89366 0.90278 0.77101 0.77307 0.91939 0.91916 0.92757 0.92787 0.96244 0.96227 0.92876 0.84299 0.84158 0.84595 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 9.17 37.16 0.34 -0.59 16 2 C 0.07 0.45 2.26 -26.73 -0.06 0.39 16 3 H 0.08 0.47 6.31 -51.94 -0.33 0.14 16 4 C 0.15 1.32 5.34 -4.04 -0.02 1.30 16 5 N -0.75 -8.06 5.51 -65.23 -0.36 -8.42 16 6 C 0.70 10.70 8.57 -86.91 -0.74 9.96 16 7 O -0.59 -11.57 16.34 5.30 0.09 -11.48 16 8 N -0.74 -10.83 5.56 -65.23 -0.36 -11.20 16 9 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 O -0.30 -2.44 9.75 -19.41 -0.19 -2.63 16 21 C 0.16 1.26 6.60 -39.23 -0.26 1.00 16 22 C -0.16 -1.12 9.99 -39.42 -0.39 -1.51 16 23 C -0.05 -0.29 10.04 -39.61 -0.40 -0.68 16 24 C -0.19 -1.26 10.02 -39.49 -0.40 -1.66 16 25 C 0.14 1.09 7.30 -39.44 -0.29 0.80 16 26 F -0.14 -1.20 17.27 2.25 0.04 -1.16 16 27 C -0.25 -1.85 8.21 -39.37 -0.32 -2.18 16 28 H 0.07 0.35 6.90 -51.93 -0.36 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 3.36 8.49 -40.82 -0.35 3.01 16 34 H 0.39 4.62 8.49 -40.82 -0.35 4.27 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 0.88 5.43 -52.48 -0.28 0.59 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -34.04 383.80 -9.24 -43.29 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.70 Total: 1.67 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.26 Total: -6.22 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.01 Total: -45.76 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.10 Total: -14.11 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.04 -9.24 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176391387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.882 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds