Wall clock time and date at job start Sat Apr 11 2020 01:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 C 1.53001 * 109.47015 * 240.00682 * 2 1 3 5 5 N 1.46500 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.34780 * 119.99873 * 179.97438 * 5 4 2 7 7 O 1.21581 * 120.00254 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99599 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99793 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47016 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47041 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47455 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99423 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99997 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00158 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99522 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46984 * 60.00616 * 16 14 12 18 18 H 1.48507 * 109.46793 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47312 * 300.00153 * 16 14 12 20 20 O 1.42896 * 109.47243 * 120.00677 * 2 1 3 21 21 C 1.35903 * 116.99810 * 275.01403 * 20 2 1 22 22 C 1.38761 * 120.04313 * 5.44178 * 21 20 2 23 23 C 1.38131 * 119.99697 * 179.97438 * 22 21 20 24 24 C 1.38254 * 120.07949 * 359.97438 * 23 22 21 25 25 C 1.38479 * 120.08103 * 0.02562 * 24 23 22 26 26 F 1.35105 * 119.99335 * 179.97438 * 25 24 23 27 27 C 1.38376 * 120.00814 * 0.02562 * 25 24 23 28 28 H 1.08992 * 109.47341 * 59.99427 * 1 2 3 29 29 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46555 * 299.99138 * 1 2 3 31 31 H 1.09001 * 109.47205 * 300.00044 * 4 2 1 32 32 H 1.09005 * 109.47375 * 59.99720 * 4 2 1 33 33 H 0.97003 * 120.00159 * 359.97438 * 5 4 2 34 34 H 0.97003 * 120.00433 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46474 * 299.99468 * 9 8 6 36 36 H 1.08992 * 109.47466 * 59.99696 * 9 8 6 37 37 H 1.09003 * 109.47241 * 299.99731 * 10 9 8 38 38 H 1.09000 * 109.47374 * 59.99764 * 10 9 8 39 39 H 1.08999 * 109.47593 * 299.99839 * 11 10 9 40 40 H 1.09005 * 109.47268 * 59.99593 * 11 10 9 41 41 H 0.96998 * 119.99879 * 179.97438 * 15 14 12 42 42 H 1.08007 * 120.00528 * 0.25540 * 22 21 20 43 43 H 1.08005 * 119.96353 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.96221 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.04321 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5050 -0.7206 -1.2497 6 6 4.1789 -1.3045 -2.2604 7 8 3.5710 -1.8312 -3.1721 8 7 5.5266 -1.3035 -2.2609 9 6 6.2591 -1.9377 -3.3599 10 6 7.7633 -1.7973 -3.1181 11 6 8.5283 -2.4601 -4.2654 12 6 10.0100 -2.3214 -4.0276 13 1 10.3700 -1.8110 -3.1465 14 6 10.9059 -2.8459 -4.9349 15 7 10.4675 -3.4669 -6.0080 16 14 12.7425 -2.6732 -4.6404 17 1 13.1024 -3.3319 -3.3591 18 1 13.4850 -3.3167 -5.7540 19 1 13.1000 -1.2335 -4.5744 20 8 2.0064 -0.6738 1.1667 21 6 2.1123 0.0623 2.3042 22 6 1.6595 1.3738 2.3277 23 6 1.7671 2.1209 3.4845 24 6 2.3251 1.5635 4.6200 25 6 2.7780 0.2550 4.6002 26 9 3.3235 -0.2878 5.7106 27 6 2.6729 -0.4963 3.4429 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 1.6767 -1.7488 -1.2495 32 1 1.6766 -0.2072 -2.1393 33 1 3.9901 -0.3000 -0.5225 34 1 6.0117 -0.8823 -1.5341 35 1 5.9965 -2.9944 -3.4094 36 1 5.9951 -1.4532 -4.2998 37 1 8.0263 -0.7407 -3.0682 38 1 8.0271 -2.2821 -2.1781 39 1 8.2654 -3.5168 -4.3149 40 1 8.2646 -1.9757 -5.2056 41 1 11.0978 -3.8355 -6.6465 42 1 1.2188 1.8090 1.4428 43 1 1.4141 3.1415 3.5023 44 1 2.4080 2.1492 5.5236 45 1 3.0263 -1.5167 3.4267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176391403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:30 Heat of formation + Delta-G solvation = -127.281756 kcal Electronic energy + Delta-G solvation = -25953.060154 eV Core-core repulsion = 21883.967337 eV Total energy + Delta-G solvation = -4069.092817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97159 -41.51377 -40.86358 -38.60454 -37.08825 -35.89059 -35.18514 -33.49661 -32.63035 -31.48868 -30.70132 -28.78554 -27.03269 -24.82918 -24.30629 -23.84443 -22.30705 -22.03982 -21.80705 -19.69943 -19.26552 -18.55262 -17.78514 -17.41843 -17.32947 -17.04768 -16.82109 -16.73752 -16.50117 -16.08965 -15.79003 -15.73192 -15.26520 -15.04898 -14.70058 -14.32533 -14.25156 -13.87332 -13.79464 -13.73119 -13.40960 -13.26513 -13.18964 -12.71062 -12.58599 -12.54623 -12.40313 -12.36701 -11.97378 -11.73711 -11.66072 -11.65353 -11.31739 -11.15131 -10.54084 -10.42183 -9.91777 -9.79098 -9.31270 -8.18608 -6.30151 0.10764 0.28436 1.41896 1.45119 1.52832 1.66573 1.94847 2.13594 2.42522 2.58817 3.14882 3.28119 3.33860 3.54827 3.82047 3.85156 3.99944 4.04239 4.10447 4.17284 4.23405 4.24402 4.42047 4.55645 4.56932 4.67426 4.82705 4.83681 4.96687 4.99838 5.00847 5.09764 5.17320 5.20918 5.26043 5.34969 5.42100 5.47299 5.54605 5.71740 5.71965 5.84990 5.95733 6.23394 6.33252 6.86778 7.06699 7.39190 7.55270 8.93268 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.001967 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.926110 B =14230.138821 C =15849.548505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.106 0.894 4 C 0.142 3.858 5 N -0.731 5.731 6 C 0.698 3.302 7 O -0.639 6.639 8 N -0.731 5.731 9 C 0.150 3.850 10 C -0.101 4.101 11 C 0.024 3.976 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.265 1.265 20 O -0.318 6.318 21 C 0.152 3.848 22 C -0.217 4.217 23 C -0.044 4.044 24 C -0.195 4.195 25 C 0.118 3.882 26 F -0.147 7.147 27 C -0.210 4.210 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.066 0.934 39 H -0.008 1.008 40 H -0.007 1.007 41 H 0.263 0.737 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.152 0.848 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.348 15.544 22.185 35.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 H 0.123 0.877 4 C 0.018 3.982 5 N -0.388 5.388 6 C 0.398 3.602 7 O -0.521 6.521 8 N -0.386 5.386 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.014 4.014 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.190 1.190 20 O -0.232 6.232 21 C 0.106 3.894 22 C -0.235 4.235 23 C -0.062 4.062 24 C -0.214 4.214 25 C 0.099 3.901 26 F -0.126 7.126 27 C -0.229 4.229 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.010 0.990 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.170 0.830 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.794 14.744 21.205 35.117 hybrid contribution 1.519 -0.291 0.487 1.621 sum -22.275 14.454 21.693 34.288 Atomic orbital electron populations 1.22320 0.92037 1.04107 1.04875 1.22877 0.96281 0.97286 0.81492 0.87657 1.21434 0.78311 1.01686 0.96806 1.44850 1.07318 1.61719 1.24903 1.16132 0.82092 0.79324 0.82670 1.90894 1.68853 1.52992 1.39314 1.45043 1.04199 1.61875 1.27531 1.21078 0.91347 0.96467 0.88593 1.21588 0.91237 1.01342 0.99680 1.18942 0.94429 0.94543 0.93510 1.21647 0.92533 1.36174 1.07595 0.91576 1.26032 1.04481 0.94818 0.94849 1.70104 1.36430 1.38507 1.12425 0.85465 0.78695 0.78817 0.77839 1.19110 1.21160 1.18972 1.86182 1.81025 1.39055 1.16985 1.18691 0.93980 0.90672 0.86015 1.21689 1.06763 0.93355 1.01710 1.21205 0.93903 1.00867 0.90231 1.21368 1.04366 0.93569 1.02082 1.17575 0.97321 0.92957 0.82275 1.91495 1.83545 1.86464 1.51053 1.20363 1.08456 1.02386 0.91728 0.88478 0.91750 0.90185 0.92123 0.88696 0.75450 0.75301 0.93650 0.93253 0.91272 0.91572 0.98994 0.98810 0.92814 0.82186 0.81404 0.83031 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.17 71.98 0.66 -0.54 16 2 C 0.08 0.77 2.31 30.60 0.07 0.84 16 3 H 0.11 0.62 6.31 -2.39 -0.02 0.61 16 4 C 0.14 2.33 5.37 86.38 0.46 2.79 16 5 N -0.73 -14.69 5.45 -478.53 -2.61 -17.30 16 6 C 0.70 20.94 8.57 179.05 1.53 22.48 16 7 O -0.64 -25.21 16.34 -3.97 -0.06 -25.27 16 8 N -0.73 -20.81 5.56 -478.53 -2.66 -23.48 16 9 C 0.15 5.44 5.67 86.38 0.49 5.93 16 10 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 11 C 0.02 1.23 4.97 29.85 0.15 1.38 16 12 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 13 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 14 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 15 N -0.93 -57.43 13.29 21.44 0.28 -57.15 16 16 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 O -0.32 -4.79 9.54 -92.45 -0.88 -5.68 16 21 C 0.15 2.13 6.60 22.50 0.15 2.28 16 22 C -0.22 -1.88 8.24 22.37 0.18 -1.70 16 23 C -0.04 -0.32 10.04 22.25 0.22 -0.10 16 24 C -0.20 -2.15 10.02 22.33 0.22 -1.92 16 25 C 0.12 1.91 7.30 22.36 0.16 2.08 16 26 F -0.15 -2.81 17.27 44.97 0.78 -2.04 16 27 C -0.21 -3.53 9.97 22.41 0.22 -3.31 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.41 6.91 -2.39 -0.02 0.40 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.41 6.16 8.36 -92.71 -0.78 5.38 16 34 H 0.41 8.90 8.49 -92.71 -0.79 8.11 16 35 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.16 0.59 5.42 -2.91 -0.02 0.58 16 43 H 0.17 0.14 8.06 -2.91 -0.02 0.11 16 44 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -76.06 383.52 1.71 -74.35 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.55 Total: 14.01 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.39 Total: -3.50 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -4.98 Total: -97.92 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.95 Total: -30.95 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -76.06 1.71 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176391403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.934 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds