Wall clock time and date at job start Sat Apr 11 2020 01:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00520 * 2 1 4 4 C 1.50700 * 109.47545 * 270.00589 * 3 2 1 5 5 H 1.08004 * 119.99763 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00068 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00017 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46831 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47189 * 119.99821 * 8 6 4 11 11 H 1.48499 * 109.46749 * 239.99979 * 8 6 4 12 12 C 1.34775 * 119.99660 * 180.02562 * 2 1 3 13 13 O 1.21592 * 120.00295 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00268 * 0.27025 * 12 2 1 15 15 C 1.39947 * 120.00054 * 175.27504 * 14 12 2 16 16 C 1.38886 * 120.07088 * 34.85591 * 15 14 12 17 17 C 1.38089 * 119.93167 * 179.97438 * 16 15 14 18 18 C 1.38306 * 120.06928 * 0.02562 * 17 16 15 19 19 C 1.38257 * 120.14138 * 0.02562 * 18 17 16 20 20 C 1.38140 * 120.07006 * 359.71944 * 19 18 17 21 21 C 1.50700 * 120.03916 * 180.30192 * 20 19 18 22 22 C 1.50694 * 109.47096 * 265.25408 * 21 20 19 23 23 C 1.38235 * 120.00120 * 269.72328 * 22 21 20 24 24 C 1.38232 * 120.00090 * 179.76594 * 23 22 21 25 25 C 1.38234 * 120.00081 * 0.48606 * 24 23 22 26 26 C 1.38235 * 119.99907 * 359.79260 * 25 24 23 27 27 C 1.38239 * 120.00163 * 359.95462 * 26 25 24 28 28 H 1.09001 * 109.46621 * 269.99977 * 1 2 3 29 29 H 1.08999 * 109.46906 * 29.99384 * 1 2 3 30 30 H 1.08994 * 109.47761 * 149.99824 * 1 2 3 31 31 H 1.09006 * 109.46628 * 30.00341 * 3 2 1 32 32 H 1.09004 * 109.47455 * 150.00332 * 3 2 1 33 33 H 0.96996 * 119.99798 * 180.02562 * 7 6 4 34 34 H 0.96995 * 119.99831 * 355.28223 * 14 12 2 35 35 H 1.07997 * 120.03306 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.96432 * 179.97438 * 17 16 15 37 37 H 1.08003 * 119.92818 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.96804 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.46485 * 25.25233 * 21 20 19 40 40 H 1.08997 * 109.47116 * 145.24983 * 21 20 19 41 41 H 1.08002 * 119.99792 * 0.02562 * 23 22 21 42 42 H 1.08004 * 119.99896 * 180.25573 * 24 23 22 43 43 H 1.07999 * 120.00358 * 179.76442 * 25 24 23 44 44 H 1.08007 * 120.00251 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.00265 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5527 3.6185 -0.6730 8 14 3.4367 3.4177 -3.4338 9 1 2.8597 2.4171 -4.3672 10 1 2.7988 4.7382 -3.6667 11 1 4.8992 3.5263 -3.6675 12 6 2.1388 -1.1672 -0.0005 13 8 3.3547 -1.1674 -0.0010 14 7 1.4649 -2.3344 -0.0065 15 6 2.1615 -3.5441 -0.1069 16 6 3.4069 -3.6817 0.4921 17 6 4.0915 -4.8768 0.3917 18 6 3.5384 -5.9358 -0.3050 19 6 2.2992 -5.8017 -0.9033 20 6 1.6070 -4.6105 -0.8021 21 6 0.2534 -4.4673 -1.4488 22 6 0.4118 -3.8495 -2.8141 23 6 0.3648 -2.4758 -2.9609 24 6 0.5149 -1.9089 -4.2127 25 6 0.7022 -2.7162 -5.3191 26 6 0.7435 -4.0902 -5.1731 27 6 0.5985 -4.6569 -3.9206 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1501 1.1382 0.5138 33 1 4.0289 4.4447 -0.8502 34 1 0.4972 -2.3360 0.0586 35 1 3.8395 -2.8550 1.0359 36 1 5.0601 -4.9843 0.8569 37 1 4.0759 -6.8694 -0.3824 38 1 1.8697 -6.6306 -1.4463 39 1 -0.2086 -5.4498 -1.5459 40 1 -0.3782 -3.8282 -0.8318 41 1 0.2148 -1.8453 -2.0970 42 1 0.4823 -0.8354 -4.3267 43 1 0.8157 -2.2735 -6.2976 44 1 0.8894 -4.7210 -6.0376 45 1 0.6312 -5.7303 -3.8065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176542969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:33 Heat of formation + Delta-G solvation = 31.245105 kcal Electronic energy + Delta-G solvation = -27641.779447 eV Core-core repulsion = 24010.330095 eV Total energy + Delta-G solvation = -3631.449352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53706 -39.10650 -38.31865 -35.02088 -34.55234 -33.52570 -32.53995 -30.76924 -30.29817 -29.40125 -27.67458 -26.33789 -25.75496 -23.43617 -22.59929 -22.14709 -21.75388 -20.50761 -19.41129 -17.92706 -16.84625 -16.76180 -16.51252 -15.73773 -15.36470 -15.13876 -14.88578 -14.81966 -14.34471 -14.13395 -13.83167 -13.45040 -13.32260 -13.24592 -13.05989 -12.77875 -12.37871 -12.22890 -12.20614 -12.15469 -11.92259 -11.34748 -11.27410 -11.17193 -10.92290 -10.90309 -10.81776 -10.60239 -10.15914 -10.01986 -9.60515 -9.24473 -8.79488 -8.70529 -8.47729 -8.44036 -7.93032 -7.56153 -6.04851 -4.09024 1.33925 1.52454 1.58473 1.65413 3.18181 3.29161 3.37380 3.41513 3.73007 3.88415 4.10268 4.38876 4.51047 4.75889 4.89846 4.95882 5.03215 5.11114 5.18341 5.24140 5.27454 5.29674 5.43022 5.54773 5.57697 5.64447 5.72121 5.79346 5.85083 5.89919 6.04166 6.10909 6.16185 6.22278 6.47363 6.53854 6.55587 6.66323 6.71649 6.73296 6.84585 6.85565 7.11150 7.33332 7.33910 7.48046 7.65389 7.93092 8.22201 8.55176 8.91933 9.22853 9.56386 11.03189 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004829 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.662921 B = 5796.465924 C = 7193.150821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.611 5.611 3 C 0.260 3.740 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.699 3.301 13 O -0.566 6.566 14 N -0.695 5.695 15 C 0.188 3.812 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.146 4.146 19 C -0.098 4.098 20 C -0.117 4.117 21 C -0.033 4.033 22 C -0.077 4.077 23 C -0.106 4.106 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.117 4.117 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.262 0.738 34 H 0.398 0.602 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 -18.298 -1.723 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.141 3.859 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.401 3.599 13 O -0.442 6.442 14 N -0.345 5.345 15 C 0.091 3.909 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.165 4.165 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.070 4.070 22 C -0.077 4.077 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.235 0.765 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.456 -17.955 -1.679 19.918 hybrid contribution -0.191 0.547 -1.079 1.225 sum -8.647 -17.408 -2.758 19.632 Atomic orbital electron populations 1.21644 0.81892 1.02329 1.00478 1.47488 1.05544 1.06347 1.75311 1.19253 0.92339 0.76777 0.97552 1.21465 1.36335 1.06070 0.92329 0.92438 1.24910 0.95381 0.96420 0.97308 1.69939 1.38550 1.14337 1.30592 0.86478 0.78150 0.78263 0.84759 1.19818 1.20988 1.20886 1.15896 0.85573 0.79984 0.78489 1.90890 1.11343 1.85395 1.56542 1.43013 1.09750 1.03878 1.77890 1.17358 0.93250 0.84633 0.95615 1.21419 0.94648 0.98144 0.99832 1.21037 0.99517 0.92732 0.98989 1.20987 0.96132 0.98969 1.00418 1.20688 0.94938 0.96307 0.99683 1.19425 0.97873 0.94553 1.00151 1.19416 0.93853 1.01318 0.92459 1.19702 0.99989 0.93591 0.94382 1.21132 0.99534 0.94175 0.97588 1.21235 0.98627 1.00250 0.92695 1.21138 1.00593 0.93825 0.98738 1.21066 1.00772 0.95043 0.97163 1.20917 1.01009 0.99276 0.92305 0.93533 0.90119 0.93387 0.94786 0.93689 0.92787 0.76465 0.83910 0.86140 0.86492 0.86282 0.89938 0.90956 0.86338 0.85853 0.86374 0.86422 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.17 59.85 0.61 1.83 16 2 N -0.61 -12.69 2.86 -188.74 -0.54 -13.23 16 3 C 0.26 6.69 5.16 -5.20 -0.03 6.67 16 4 C -0.52 -14.65 9.39 -34.44 -0.32 -14.98 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.70 14.71 8.12 -86.92 -0.71 14.00 16 13 O -0.57 -14.38 13.35 5.28 0.07 -14.31 16 14 N -0.70 -11.28 3.74 -14.22 -0.05 -11.33 16 15 C 0.19 3.01 6.28 -83.69 -0.53 2.48 16 16 C -0.12 -2.02 8.70 -39.40 -0.34 -2.36 16 17 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 16 18 C -0.15 -1.77 10.04 -39.55 -0.40 -2.17 16 19 C -0.10 -1.16 9.68 -39.61 -0.38 -1.55 16 20 C -0.12 -1.55 5.13 -104.43 -0.54 -2.09 16 21 C -0.03 -0.37 5.16 -29.04 -0.15 -0.52 16 22 C -0.08 -1.00 5.12 -104.63 -0.54 -1.53 16 23 C -0.11 -1.58 9.48 -39.58 -0.38 -1.95 16 24 C -0.11 -1.66 10.05 -39.58 -0.40 -2.06 16 25 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 26 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 27 C -0.12 -1.40 9.70 -39.58 -0.38 -1.79 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.05 0.59 4.72 -51.93 -0.25 0.34 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.40 5.21 4.77 -40.82 -0.19 5.02 16 35 H 0.14 2.74 6.21 -52.49 -0.33 2.42 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 40 H 0.07 0.71 6.65 -51.93 -0.35 0.37 16 41 H 0.12 1.77 5.05 -52.49 -0.27 1.51 16 42 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -33.73 371.49 -10.92 -44.64 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.94 Total: 7.59 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -5.76 Total: -10.14 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.14 Total: -50.27 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.07 Total: -14.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.73 -10.92 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176542969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.887 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds