Wall clock time and date at job start Sat Apr 11 2020 01:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00520 * 2 1 4 4 C 1.50700 * 109.47545 * 270.00589 * 3 2 1 5 5 H 1.08004 * 119.99763 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00068 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00017 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46831 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47189 * 119.99821 * 8 6 4 11 11 H 1.48499 * 109.46749 * 239.99979 * 8 6 4 12 12 C 1.34775 * 119.99660 * 180.02562 * 2 1 3 13 13 O 1.21592 * 120.00295 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00268 * 0.27025 * 12 2 1 15 15 C 1.39947 * 120.00054 * 175.27504 * 14 12 2 16 16 C 1.38886 * 120.07088 * 34.85591 * 15 14 12 17 17 C 1.38089 * 119.93167 * 179.97438 * 16 15 14 18 18 C 1.38306 * 120.06928 * 0.02562 * 17 16 15 19 19 C 1.38257 * 120.14138 * 0.02562 * 18 17 16 20 20 C 1.38140 * 120.07006 * 359.71944 * 19 18 17 21 21 C 1.50700 * 120.03916 * 180.30192 * 20 19 18 22 22 C 1.50694 * 109.47096 * 265.25408 * 21 20 19 23 23 C 1.38235 * 120.00120 * 269.72328 * 22 21 20 24 24 C 1.38232 * 120.00090 * 179.76594 * 23 22 21 25 25 C 1.38234 * 120.00081 * 0.48606 * 24 23 22 26 26 C 1.38235 * 119.99907 * 359.79260 * 25 24 23 27 27 C 1.38239 * 120.00163 * 359.95462 * 26 25 24 28 28 H 1.09001 * 109.46621 * 269.99977 * 1 2 3 29 29 H 1.08999 * 109.46906 * 29.99384 * 1 2 3 30 30 H 1.08994 * 109.47761 * 149.99824 * 1 2 3 31 31 H 1.09006 * 109.46628 * 30.00341 * 3 2 1 32 32 H 1.09004 * 109.47455 * 150.00332 * 3 2 1 33 33 H 0.96996 * 119.99798 * 180.02562 * 7 6 4 34 34 H 0.96995 * 119.99831 * 355.28223 * 14 12 2 35 35 H 1.07997 * 120.03306 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.96432 * 179.97438 * 17 16 15 37 37 H 1.08003 * 119.92818 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.96804 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.46485 * 25.25233 * 21 20 19 40 40 H 1.08997 * 109.47116 * 145.24983 * 21 20 19 41 41 H 1.08002 * 119.99792 * 0.02562 * 23 22 21 42 42 H 1.08004 * 119.99896 * 180.25573 * 24 23 22 43 43 H 1.07999 * 120.00358 * 179.76442 * 25 24 23 44 44 H 1.08007 * 120.00251 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.00265 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5527 3.6185 -0.6730 8 14 3.4367 3.4177 -3.4338 9 1 2.8597 2.4171 -4.3672 10 1 2.7988 4.7382 -3.6667 11 1 4.8992 3.5263 -3.6675 12 6 2.1388 -1.1672 -0.0005 13 8 3.3547 -1.1674 -0.0010 14 7 1.4649 -2.3344 -0.0065 15 6 2.1615 -3.5441 -0.1069 16 6 3.4069 -3.6817 0.4921 17 6 4.0915 -4.8768 0.3917 18 6 3.5384 -5.9358 -0.3050 19 6 2.2992 -5.8017 -0.9033 20 6 1.6070 -4.6105 -0.8021 21 6 0.2534 -4.4673 -1.4488 22 6 0.4118 -3.8495 -2.8141 23 6 0.3648 -2.4758 -2.9609 24 6 0.5149 -1.9089 -4.2127 25 6 0.7022 -2.7162 -5.3191 26 6 0.7435 -4.0902 -5.1731 27 6 0.5985 -4.6569 -3.9206 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1501 1.1382 0.5138 33 1 4.0289 4.4447 -0.8502 34 1 0.4972 -2.3360 0.0586 35 1 3.8395 -2.8550 1.0359 36 1 5.0601 -4.9843 0.8569 37 1 4.0759 -6.8694 -0.3824 38 1 1.8697 -6.6306 -1.4463 39 1 -0.2086 -5.4498 -1.5459 40 1 -0.3782 -3.8282 -0.8318 41 1 0.2148 -1.8453 -2.0970 42 1 0.4823 -0.8354 -4.3267 43 1 0.8157 -2.2735 -6.2976 44 1 0.8894 -4.7210 -6.0376 45 1 0.6312 -5.7303 -3.8065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176542969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:32 Heat of formation + Delta-G solvation = 13.357697 kcal Electronic energy + Delta-G solvation = -27642.555103 eV Core-core repulsion = 24010.330095 eV Total energy + Delta-G solvation = -3632.225008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86549 -40.28431 -39.48037 -36.73574 -35.92586 -34.71777 -34.50322 -31.74801 -31.32076 -30.74936 -29.42602 -27.50134 -27.13891 -25.22981 -23.75054 -23.23357 -22.95531 -21.51848 -20.92228 -19.33246 -18.69980 -18.23112 -17.73633 -17.01976 -16.65207 -16.56639 -16.20458 -16.07265 -15.79718 -15.47069 -14.99894 -14.74692 -14.58136 -14.36289 -14.28568 -14.15561 -13.93951 -13.51679 -13.40110 -13.30977 -13.19294 -13.02684 -12.86002 -12.60351 -12.31679 -12.28786 -12.18469 -11.89613 -11.81001 -11.70962 -11.32380 -10.89074 -10.65722 -9.79618 -9.72392 -9.57490 -9.49854 -8.89364 -8.23170 -6.37015 0.31669 0.50440 0.52871 0.60927 1.32593 1.35528 1.46398 1.71191 2.20531 2.37025 2.85158 2.98752 3.02092 3.07493 3.87768 3.94652 3.99529 4.04634 4.15199 4.19581 4.28141 4.33999 4.39032 4.53583 4.57904 4.62094 4.65464 4.69119 4.80673 4.86569 4.89206 4.95842 5.10521 5.16936 5.19254 5.24868 5.42424 5.49417 5.54165 5.58774 5.65083 5.66180 5.71771 5.73945 5.79408 6.05003 6.07355 6.14135 6.21656 6.71378 7.02499 7.29740 7.62687 8.83565 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004829 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.662921 B = 5796.465924 C = 7193.150821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.277 3.723 4 C -0.535 4.535 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.283 1.283 12 C 0.696 3.304 13 O -0.620 6.620 14 N -0.673 5.673 15 C 0.156 3.844 16 C -0.152 4.152 17 C -0.114 4.114 18 C -0.136 4.136 19 C -0.091 4.091 20 C -0.110 4.110 21 C -0.032 4.032 22 C -0.081 4.081 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.115 4.115 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.030 0.970 32 H -0.001 1.001 33 H 0.267 0.733 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.148 0.852 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 -22.031 -3.658 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.156 3.844 4 C -0.574 4.574 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.191 1.191 11 H -0.209 1.209 12 C 0.398 3.602 13 O -0.500 6.500 14 N -0.324 5.324 15 C 0.061 3.939 16 C -0.173 4.173 17 C -0.133 4.133 18 C -0.155 4.155 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.069 4.069 22 C -0.081 4.081 23 C -0.147 4.147 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.133 4.133 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.121 0.879 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.165 0.835 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.190 -21.729 -3.605 24.269 hybrid contribution 0.340 1.589 -0.456 1.688 sum -9.850 -20.140 -4.061 22.784 Atomic orbital electron populations 1.21926 0.78317 1.03678 1.02713 1.47310 1.07672 1.04869 1.75435 1.18693 0.90872 0.78876 0.96002 1.21677 1.36554 1.06202 0.92977 0.93278 1.25766 0.94996 0.96477 1.01579 1.70046 1.39107 1.14815 1.32734 0.85459 0.77860 0.78450 0.79611 1.19448 1.19145 1.20903 1.16056 0.85043 0.81074 0.78072 1.90852 1.13920 1.86381 1.58838 1.42603 1.10209 1.02663 1.76962 1.17647 0.93586 0.85120 0.97588 1.21300 0.96036 0.98478 1.01509 1.21245 1.00031 0.92394 0.99606 1.21413 0.96326 0.99290 0.98473 1.21214 0.94404 0.96645 0.98686 1.19691 0.98802 0.93881 0.98931 1.19539 0.92773 1.03429 0.91128 1.19924 0.99542 0.92765 0.95908 1.21208 1.00974 0.95493 0.97055 1.21297 1.00776 0.99877 0.93993 1.21373 1.00544 0.94788 0.98689 1.21465 0.99452 0.94590 0.98575 1.21360 0.99310 1.00960 0.91626 0.90705 0.90545 0.90345 0.95181 0.98297 0.92420 0.74671 0.87902 0.85034 0.82989 0.82069 0.86200 0.90173 0.87476 0.87656 0.85155 0.83451 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.17 127.77 1.30 3.60 16 2 N -0.62 -26.99 2.86 -869.32 -2.48 -29.48 16 3 C 0.28 15.19 5.16 85.63 0.44 15.64 16 4 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.63 5.46 84.65 0.46 1.09 16 7 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 8 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 C 0.70 31.04 8.12 179.06 1.45 32.49 16 13 O -0.62 -34.15 13.35 -4.01 -0.05 -34.20 16 14 N -0.67 -22.33 3.74 -317.17 -1.19 -23.51 16 15 C 0.16 4.98 6.28 38.15 0.24 5.22 16 16 C -0.15 -5.38 8.70 22.39 0.19 -5.19 16 17 C -0.11 -3.12 10.04 22.25 0.22 -2.90 16 18 C -0.14 -2.82 10.04 22.29 0.22 -2.59 16 19 C -0.09 -1.74 9.68 22.25 0.22 -1.53 16 20 C -0.11 -2.60 5.13 -19.74 -0.10 -2.70 16 21 C -0.03 -0.57 5.16 29.10 0.15 -0.42 16 22 C -0.08 -1.89 5.12 -19.87 -0.10 -1.99 16 23 C -0.13 -3.78 9.48 22.27 0.21 -3.57 16 24 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 25 C -0.14 -3.46 10.05 22.27 0.22 -3.24 16 26 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 27 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 30 H 0.08 1.88 4.72 -2.39 -0.01 1.87 16 31 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 32 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.41 10.61 4.77 -92.71 -0.44 10.17 16 35 H 0.10 4.40 6.21 -2.91 -0.02 4.38 16 36 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.12 1.33 8.00 -2.39 -0.02 1.31 16 40 H 0.08 1.32 6.65 -2.39 -0.02 1.31 16 41 H 0.11 3.24 5.05 -2.91 -0.01 3.22 16 42 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16 43 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 45 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -79.88 371.49 5.19 -74.69 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.57 Total: 26.56 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 6.04 Total: -5.70 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -3.39 Total: -109.36 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.05 Total: -34.20 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.88 5.19 -74.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176542969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.047 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds