Wall clock time and date at job start Sat Apr 11 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46812 * 2 1 4 4 C 1.50703 * 109.47304 * 120.00308 * 2 1 3 5 5 H 1.07994 * 119.99399 * 120.00023 * 4 2 1 6 6 C 1.37874 * 119.99789 * 299.99650 * 4 2 1 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46716 * 120.00463 * 8 6 4 11 11 H 1.48500 * 109.46999 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.46831 * 240.00445 * 2 1 3 13 13 C 1.34774 * 120.00251 * 84.99772 * 12 2 1 14 14 O 1.21603 * 119.99592 * 0.02562 * 13 12 2 15 15 C 1.47436 * 120.00051 * 179.97438 * 13 12 2 16 16 C 1.39729 * 120.20592 * 0.02562 * 15 13 12 17 17 C 1.37756 * 119.92472 * 179.97438 * 16 15 13 18 18 C 1.38619 * 120.35512 * 0.02562 * 17 16 15 19 19 C 1.37953 * 120.42259 * 359.97438 * 18 17 16 20 20 C 1.38964 * 120.06339 * 359.78910 * 19 18 17 21 21 N 1.38933 * 120.17754 * 180.25602 * 20 19 18 22 22 C 1.46497 * 120.00285 * 90.20941 * 21 20 19 23 23 C 1.39738 * 119.99825 * 270.20935 * 21 20 19 24 24 C 1.38923 * 120.07474 * 359.72191 * 23 21 20 25 25 C 1.38095 * 119.92033 * 179.78980 * 24 23 21 26 26 C 1.38290 * 120.07957 * 0.46475 * 25 24 23 27 27 C 1.38301 * 120.14835 * 359.79215 * 26 25 24 28 28 C 1.38095 * 120.07374 * 359.97035 * 27 26 25 29 29 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46935 * 299.99658 * 1 2 3 31 31 H 1.08992 * 109.47061 * 59.99633 * 1 2 3 32 32 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 33 33 H 0.97006 * 119.99584 * 264.99701 * 12 2 1 34 34 H 1.07998 * 120.03833 * 359.95202 * 16 15 13 35 35 H 1.07998 * 119.82135 * 179.97438 * 17 16 15 36 36 H 1.07995 * 119.78580 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.96762 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46879 * 89.99913 * 22 21 20 39 39 H 1.09002 * 109.47481 * 210.00160 * 22 21 20 40 40 H 1.08996 * 109.47057 * 330.00279 * 22 21 20 41 41 H 1.08002 * 120.03456 * 0.02562 * 24 23 21 42 42 H 1.08001 * 119.96383 * 180.23615 * 25 24 23 43 43 H 1.07998 * 119.92843 * 179.76587 * 26 25 24 44 44 H 1.08001 * 119.96032 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.03630 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1468 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1618 -2.4116 15 6 2.6389 -0.7130 -3.5609 16 6 2.9725 -2.0687 -3.5031 17 6 3.4310 -2.7123 -4.6315 18 6 3.5645 -2.0221 -5.8262 19 6 3.2393 -0.6834 -5.8997 20 6 2.7704 -0.0181 -4.7733 21 7 2.4373 1.3287 -4.8460 22 6 1.0706 1.7277 -5.1913 23 6 3.4058 2.3028 -4.5896 24 6 4.7008 1.9262 -4.2563 25 6 5.6565 2.8916 -4.0078 26 6 5.3234 4.2317 -4.0810 27 6 4.0338 4.6101 -4.4074 28 6 3.0744 3.6500 -4.6619 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.7084 1.1607 3.4844 33 1 2.2490 -1.6318 -1.1527 34 1 2.8712 -2.6112 -2.5748 35 1 3.6888 -3.7600 -4.5848 36 1 3.9244 -2.5359 -6.7053 37 1 3.3457 -0.1530 -6.8343 38 1 0.4774 1.8174 -4.2813 39 1 1.0917 2.6876 -5.7074 40 1 0.6259 0.9750 -5.8422 41 1 4.9607 0.8797 -4.1954 42 1 6.6645 2.5996 -3.7524 43 1 6.0718 4.9846 -3.8825 44 1 3.7769 5.6576 -4.4633 45 1 2.0674 3.9461 -4.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194640710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:58 Heat of formation + Delta-G solvation = 38.306549 kcal Electronic energy + Delta-G solvation = -27533.873034 eV Core-core repulsion = 23902.729890 eV Total energy + Delta-G solvation = -3631.143145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42892 -38.79459 -37.84858 -35.89572 -34.65723 -32.50409 -31.19382 -31.02637 -30.27985 -29.17133 -28.57458 -25.92451 -25.25663 -23.75139 -22.82667 -21.89143 -21.27354 -20.28754 -19.45158 -18.05735 -17.41965 -16.42662 -16.02857 -15.63381 -15.33705 -14.98929 -14.79601 -14.45241 -14.28251 -14.05437 -13.89131 -13.56844 -13.42999 -13.17547 -12.93438 -12.43417 -12.35548 -12.23480 -12.08510 -11.80293 -11.64812 -11.44914 -11.16132 -11.08643 -10.95786 -10.73222 -10.63710 -10.30230 -10.24232 -9.74941 -9.04718 -8.99592 -8.95493 -8.78697 -8.61838 -8.54594 -7.86280 -7.07938 -6.12156 -4.21284 0.93350 1.22737 1.74505 1.92039 3.23567 3.27204 3.28581 3.31418 3.34023 4.05239 4.14038 4.20815 4.37756 4.82408 4.87946 4.99578 5.10286 5.20375 5.24067 5.31140 5.35965 5.42610 5.48306 5.58443 5.65082 5.73595 5.84618 5.89388 6.02599 6.07855 6.18035 6.28619 6.35906 6.43596 6.55791 6.72154 6.76810 6.83077 6.90441 6.96078 7.13445 7.15301 7.46716 7.57060 7.60819 7.70000 7.81555 7.92453 8.15083 8.67306 8.79331 9.14281 9.46428 10.93902 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011464 B = 0.004176 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.815211 B = 6703.150896 C = 7839.421950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.538 3.462 14 O -0.529 6.529 15 C -0.125 4.125 16 C -0.085 4.085 17 C -0.125 4.125 18 C -0.099 4.099 19 C -0.128 4.128 20 C 0.199 3.801 21 N -0.574 5.574 22 C 0.102 3.898 23 C 0.243 3.757 24 C -0.188 4.188 25 C -0.076 4.076 26 C -0.184 4.184 27 C -0.077 4.077 28 C -0.188 4.188 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -2.323 -18.216 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.353 5.353 13 C 0.323 3.677 14 O -0.407 6.407 15 C -0.129 4.129 16 C -0.104 4.104 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.148 4.148 20 C 0.106 3.894 21 N -0.280 5.280 22 C -0.040 4.040 23 C 0.143 3.857 24 C -0.210 4.210 25 C -0.095 4.095 26 C -0.204 4.204 27 C -0.096 4.096 28 C -0.210 4.210 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.503 -1.421 -18.093 18.699 hybrid contribution 0.333 -1.079 1.109 1.582 sum 4.836 -2.500 -16.984 17.836 Atomic orbital electron populations 1.22059 0.98474 0.98990 1.00812 1.18730 0.90923 0.93986 0.79829 0.93339 1.21240 1.32358 1.13176 0.90336 0.92121 1.24882 0.94809 0.94942 0.99042 1.69914 1.35902 1.22477 1.23746 0.86401 0.78602 0.79541 0.82607 1.19742 1.20853 1.20871 1.46501 1.64950 1.13396 1.10457 1.18012 0.79553 0.87023 0.83140 1.90758 1.50216 1.14931 1.84767 1.20933 1.02340 0.94443 0.95228 1.21385 0.96803 0.93216 0.99045 1.21121 1.00300 1.00249 0.92668 1.21141 0.98828 0.93854 0.97988 1.21447 1.00257 0.94876 0.98212 1.17312 0.96496 0.84175 0.91447 1.43152 1.09112 1.00735 1.75016 1.21624 0.81892 0.99961 1.00507 1.17619 0.87813 0.88080 0.92176 1.20585 0.92538 0.99416 1.08433 1.20800 0.98427 0.92821 0.97408 1.20814 0.96804 0.95761 1.06990 1.20810 0.92971 0.98477 0.97297 1.20585 1.00043 0.90950 1.09405 0.95585 0.89170 0.96763 0.92643 0.78145 0.85109 0.85427 0.85578 0.85492 0.91932 0.91387 0.92280 0.86913 0.86658 0.86901 0.86565 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.27 6.89 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.70 -15.09 5.02 -56.00 -0.28 -15.37 16 13 C 0.54 11.18 7.73 -12.52 -0.10 11.08 16 14 O -0.53 -12.56 12.82 5.28 0.07 -12.50 16 15 C -0.12 -2.05 5.89 -104.80 -0.62 -2.66 16 16 C -0.09 -1.12 9.53 -39.20 -0.37 -1.50 16 17 C -0.13 -1.31 10.02 -39.62 -0.40 -1.71 16 18 C -0.10 -0.99 10.03 -39.54 -0.40 -1.38 16 19 C -0.13 -1.52 9.96 -39.42 -0.39 -1.91 16 20 C 0.20 2.98 3.49 -83.58 -0.29 2.69 16 21 N -0.57 -9.00 1.59 -118.80 -0.19 -9.19 16 22 C 0.10 1.41 9.83 59.85 0.59 1.99 16 23 C 0.24 4.03 5.67 -83.75 -0.48 3.56 16 24 C -0.19 -3.08 9.31 -39.38 -0.37 -3.44 16 25 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 26 C -0.18 -2.60 10.04 -39.54 -0.40 -2.99 16 27 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 28 C -0.19 -2.91 9.21 -39.38 -0.36 -3.27 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.39 7.19 6.57 -40.82 -0.27 6.92 16 34 H 0.13 1.58 6.40 -52.49 -0.34 1.24 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.06 1.03 7.18 -51.93 -0.37 0.65 16 39 H 0.07 0.79 6.20 -51.93 -0.32 0.47 16 40 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 41 H 0.11 1.84 6.99 -52.49 -0.37 1.48 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.67 6.14 -52.49 -0.32 1.34 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -31.93 370.10 -9.86 -41.79 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.04 Total: 10.41 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.60 Total: -12.00 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.16 Total: -49.05 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.93 -9.86 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.093 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds