Wall clock time and date at job start Sat Apr 11 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47429 * 2 1 4 4 C 1.50694 * 109.47487 * 239.99351 * 2 1 3 5 5 H 1.08001 * 119.99849 * 275.01113 * 4 2 1 6 6 C 1.37873 * 119.99985 * 95.00314 * 4 2 1 7 7 N 1.31518 * 120.00270 * 184.92065 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 4.91922 * 6 4 2 9 9 H 1.48502 * 109.46878 * 84.83398 * 8 6 4 10 10 H 1.48498 * 109.47062 * 204.83175 * 8 6 4 11 11 H 1.48494 * 109.47257 * 324.83018 * 8 6 4 12 12 N 1.46500 * 109.46552 * 119.99343 * 2 1 3 13 13 C 1.34768 * 120.00562 * 274.99796 * 12 2 1 14 14 O 1.21611 * 119.99819 * 0.02562 * 13 12 2 15 15 C 1.47435 * 120.00609 * 180.02562 * 13 12 2 16 16 C 1.39726 * 120.20628 * 0.02604 * 15 13 12 17 17 C 1.37756 * 119.92919 * 179.97438 * 16 15 13 18 18 C 1.38614 * 120.35603 * 0.02562 * 17 16 15 19 19 C 1.37966 * 120.42040 * 359.68239 * 18 17 16 20 20 C 1.38962 * 120.05900 * 0.59744 * 19 18 17 21 21 N 1.38935 * 120.17391 * 179.70011 * 20 19 18 22 22 C 1.46501 * 119.99478 * 269.72583 * 21 20 19 23 23 C 1.39729 * 120.00132 * 89.72906 * 21 20 19 24 24 C 1.38916 * 120.07292 * 180.02562 * 23 21 20 25 25 C 1.38101 * 119.92393 * 179.69581 * 24 23 21 26 26 C 1.38290 * 120.07123 * 0.28039 * 25 24 23 27 27 C 1.38288 * 120.15648 * 359.97374 * 26 25 24 28 28 C 1.38101 * 120.06971 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47463 * 175.03610 * 1 2 3 30 30 H 1.08998 * 109.47431 * 295.04812 * 1 2 3 31 31 H 1.09004 * 109.46771 * 55.03693 * 1 2 3 32 32 H 0.96993 * 120.00141 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99972 * 95.00233 * 12 2 1 34 34 H 1.07998 * 120.03621 * 359.95531 * 16 15 13 35 35 H 1.07996 * 119.82378 * 180.02562 * 17 16 15 36 36 H 1.07990 * 119.79133 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.96837 * 180.31917 * 19 18 17 38 38 H 1.09000 * 109.47408 * 269.99472 * 22 21 20 39 39 H 1.08994 * 109.47532 * 30.00230 * 22 21 20 40 40 H 1.09001 * 109.46970 * 150.00152 * 22 21 20 41 41 H 1.08008 * 120.04176 * 359.97274 * 24 23 21 42 42 H 1.07998 * 119.96413 * 180.25831 * 25 24 23 43 43 H 1.08008 * 119.92157 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.96588 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.03586 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2288 6 6 2.3604 0.0119 -2.3579 7 7 2.7061 -0.6134 -3.4621 8 14 2.3138 1.8789 -2.3174 9 1 3.5994 2.3946 -1.7821 10 1 2.1061 2.3987 -3.6928 11 1 1.1988 2.3274 -1.4452 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8573 1.1617 2.4118 15 6 2.6388 -0.7129 3.5610 16 6 2.9732 -2.0683 3.5030 17 6 3.4327 -2.7117 4.6311 18 6 3.5652 -2.0218 5.8261 19 6 3.2449 -0.6817 5.8983 20 6 2.7742 -0.0170 4.7724 21 7 2.4450 1.3309 4.8440 22 6 1.0801 1.7340 5.1917 23 6 3.4156 2.3019 4.5842 24 6 3.0882 3.6501 4.6559 25 6 4.0515 4.6072 4.4047 26 6 5.3393 4.2249 4.0765 27 6 5.6673 2.8837 3.9991 28 6 4.7089 1.9213 4.2491 29 1 -0.3634 -1.0238 -0.0889 30 1 -0.3634 0.4351 0.9310 31 1 -0.3633 0.5889 -0.8422 32 1 2.9372 -0.1052 -4.2552 33 1 2.2489 -1.6317 1.1528 34 1 2.8713 -2.6111 2.5749 35 1 3.6912 -3.7592 4.5843 36 1 3.9267 -2.5350 6.7047 37 1 3.3557 -0.1501 6.8317 38 1 0.4852 1.8243 4.2829 39 1 0.6347 0.9834 5.8445 40 1 1.1050 2.6945 5.7065 41 1 2.0825 3.9494 4.9121 42 1 3.7987 5.6555 4.4643 43 1 6.0909 4.9755 3.8809 44 1 6.6741 2.5885 3.7429 45 1 4.9656 0.8741 4.1881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194640726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:00 Heat of formation + Delta-G solvation = 37.884820 kcal Electronic energy + Delta-G solvation = -27708.032252 eV Core-core repulsion = 24076.870820 eV Total energy + Delta-G solvation = -3631.161432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49379 -38.87690 -37.95699 -35.95344 -34.74339 -32.47699 -31.43504 -31.07824 -30.33006 -29.38543 -29.08653 -25.99199 -25.31973 -23.81351 -22.87296 -21.93587 -21.23026 -20.28505 -19.58743 -18.13603 -17.53866 -16.65886 -16.16682 -15.85159 -15.39140 -15.08734 -14.82762 -14.50817 -14.34463 -13.99879 -13.92852 -13.61957 -13.50675 -13.23619 -12.98739 -12.54659 -12.45056 -12.39727 -12.24949 -12.12079 -11.84237 -11.51372 -11.41427 -11.20883 -11.09810 -10.81370 -10.68950 -10.57524 -9.88123 -9.80710 -9.21137 -9.08470 -9.03955 -8.83330 -8.69828 -8.67196 -8.04415 -7.13812 -6.23999 -4.27742 0.88321 1.19490 1.69075 1.86595 3.20774 3.22423 3.27873 3.34965 3.42793 3.94516 4.05110 4.15454 4.32964 4.79365 4.84636 4.94517 5.03325 5.16141 5.18732 5.25876 5.31791 5.37962 5.43509 5.52964 5.59518 5.68631 5.80380 5.83988 5.97251 5.99458 6.14570 6.23745 6.31657 6.32934 6.40435 6.50571 6.51836 6.67161 6.67938 6.72220 6.85440 6.93946 7.08117 7.18671 7.38441 7.55002 7.55448 7.75712 8.14043 8.56729 8.76261 8.99316 9.38407 10.87672 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.005052 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.843731 B = 5541.094394 C = 6972.863437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.233 3.767 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.699 5.699 13 C 0.539 3.461 14 O -0.534 6.534 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.125 4.125 18 C -0.098 4.098 19 C -0.128 4.128 20 C 0.199 3.801 21 N -0.575 5.575 22 C 0.102 3.898 23 C 0.242 3.758 24 C -0.189 4.189 25 C -0.078 4.078 26 C -0.184 4.184 27 C -0.075 4.075 28 C -0.188 4.188 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.268 0.732 33 H 0.390 0.610 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 0.861 20.589 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.131 3.869 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.122 4.122 7 N -0.525 5.525 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.348 5.348 13 C 0.324 3.676 14 O -0.413 6.413 15 C -0.131 4.131 16 C -0.102 4.102 17 C -0.143 4.143 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.106 3.894 21 N -0.281 5.281 22 C -0.039 4.039 23 C 0.142 3.858 24 C -0.211 4.211 25 C -0.096 4.096 26 C -0.203 4.203 27 C -0.094 4.094 28 C -0.210 4.210 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.224 0.776 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.441 1.652 20.405 20.522 hybrid contribution 0.121 0.306 -0.377 0.501 sum 1.562 1.958 20.028 20.184 Atomic orbital electron populations 1.22201 0.98619 1.00472 0.99149 1.19108 0.90821 0.94356 0.82600 0.93184 1.20992 1.45316 0.95566 0.94954 0.90391 1.24922 0.93546 0.98590 0.95144 1.69879 1.44723 1.36189 1.01693 0.86901 0.79899 0.85880 0.77278 1.19800 1.21186 1.18541 1.46610 1.64755 1.13730 1.09754 1.18106 0.79298 0.87006 0.83212 1.90748 1.50561 1.15027 1.84918 1.20869 1.02712 0.94496 0.95055 1.21403 0.96559 0.93169 0.99117 1.21136 1.00178 1.00346 0.92608 1.21159 0.98644 0.93823 0.98022 1.21447 1.00286 0.94867 0.98210 1.17310 0.96530 0.84102 0.91479 1.43156 1.09185 1.00766 1.74967 1.21617 0.81944 0.99974 1.00406 1.17616 0.87800 0.88109 0.92239 1.20581 1.00024 0.90957 1.09523 1.20810 0.92969 0.98481 0.97365 1.20823 0.96838 0.95770 1.06918 1.20821 0.98483 0.92823 0.97278 1.20608 0.92538 0.99507 1.08318 0.93495 0.95330 0.92955 0.92235 0.77568 0.84959 0.85321 0.85521 0.85476 0.92045 0.92229 0.91401 0.86268 0.86573 0.86871 0.86573 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.47 37.16 0.35 -2.88 16 2 C 0.23 5.63 2.22 -69.09 -0.15 5.48 16 3 H 0.05 1.33 4.73 -51.93 -0.25 1.09 16 4 C -0.53 -14.35 9.05 -34.44 -0.31 -14.66 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 8 Si 0.87 22.07 26.99 -169.99 -4.59 17.48 16 9 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.52 6.82 56.52 0.39 -6.13 16 12 N -0.70 -14.44 5.02 -56.01 -0.28 -14.72 16 13 C 0.54 10.76 7.73 -12.52 -0.10 10.67 16 14 O -0.53 -12.11 12.81 5.27 0.07 -12.04 16 15 C -0.13 -2.02 5.89 -104.80 -0.62 -2.64 16 16 C -0.08 -1.07 9.53 -39.20 -0.37 -1.45 16 17 C -0.12 -1.28 10.02 -39.62 -0.40 -1.67 16 18 C -0.10 -0.95 10.03 -39.54 -0.40 -1.34 16 19 C -0.13 -1.48 9.96 -39.41 -0.39 -1.87 16 20 C 0.20 2.89 3.49 -83.57 -0.29 2.60 16 21 N -0.57 -8.73 1.59 -118.80 -0.19 -8.91 16 22 C 0.10 1.34 9.83 59.85 0.59 1.93 16 23 C 0.24 3.93 5.68 -83.76 -0.48 3.45 16 24 C -0.19 -2.84 9.21 -39.38 -0.36 -3.21 16 25 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 26 C -0.18 -2.57 10.04 -39.54 -0.40 -2.96 16 27 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 28 C -0.19 -3.04 9.31 -39.38 -0.37 -3.41 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.39 7.12 6.62 -40.82 -0.27 6.85 16 34 H 0.13 1.58 6.40 -52.49 -0.34 1.24 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.06 0.95 7.17 -51.93 -0.37 0.58 16 39 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 40 H 0.07 0.75 6.20 -51.93 -0.32 0.43 16 41 H 0.12 1.60 6.15 -52.48 -0.32 1.28 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.11 1.84 6.99 -52.49 -0.37 1.48 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -32.70 369.84 -9.26 -41.97 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.03 Total: 8.89 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -4.58 Total: -12.71 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.30 Total: -49.15 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.59 Total: 17.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.70 -9.26 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.850 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds