Wall clock time and date at job start Sat Apr 11 2020 01:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47429 * 2 1 4 4 C 1.50694 * 109.47487 * 239.99351 * 2 1 3 5 5 H 1.08001 * 119.99849 * 275.01113 * 4 2 1 6 6 C 1.37873 * 119.99985 * 95.00314 * 4 2 1 7 7 N 1.31518 * 120.00270 * 184.92065 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 4.91922 * 6 4 2 9 9 H 1.48502 * 109.46878 * 84.83398 * 8 6 4 10 10 H 1.48498 * 109.47062 * 204.83175 * 8 6 4 11 11 H 1.48494 * 109.47257 * 324.83018 * 8 6 4 12 12 N 1.46500 * 109.46552 * 119.99343 * 2 1 3 13 13 C 1.34768 * 120.00562 * 274.99796 * 12 2 1 14 14 O 1.21611 * 119.99819 * 0.02562 * 13 12 2 15 15 C 1.47435 * 120.00609 * 180.02562 * 13 12 2 16 16 C 1.39726 * 120.20628 * 0.02604 * 15 13 12 17 17 C 1.37756 * 119.92919 * 179.97438 * 16 15 13 18 18 C 1.38614 * 120.35603 * 0.02562 * 17 16 15 19 19 C 1.37966 * 120.42040 * 359.68239 * 18 17 16 20 20 C 1.38962 * 120.05900 * 0.59744 * 19 18 17 21 21 N 1.38935 * 120.17391 * 179.70011 * 20 19 18 22 22 C 1.46501 * 119.99478 * 269.72583 * 21 20 19 23 23 C 1.39729 * 120.00132 * 89.72906 * 21 20 19 24 24 C 1.38916 * 120.07292 * 180.02562 * 23 21 20 25 25 C 1.38101 * 119.92393 * 179.69581 * 24 23 21 26 26 C 1.38290 * 120.07123 * 0.28039 * 25 24 23 27 27 C 1.38288 * 120.15648 * 359.97374 * 26 25 24 28 28 C 1.38101 * 120.06971 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47463 * 175.03610 * 1 2 3 30 30 H 1.08998 * 109.47431 * 295.04812 * 1 2 3 31 31 H 1.09004 * 109.46771 * 55.03693 * 1 2 3 32 32 H 0.96993 * 120.00141 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99972 * 95.00233 * 12 2 1 34 34 H 1.07998 * 120.03621 * 359.95531 * 16 15 13 35 35 H 1.07996 * 119.82378 * 180.02562 * 17 16 15 36 36 H 1.07990 * 119.79133 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.96837 * 180.31917 * 19 18 17 38 38 H 1.09000 * 109.47408 * 269.99472 * 22 21 20 39 39 H 1.08994 * 109.47532 * 30.00230 * 22 21 20 40 40 H 1.09001 * 109.46970 * 150.00152 * 22 21 20 41 41 H 1.08008 * 120.04176 * 359.97274 * 24 23 21 42 42 H 1.07998 * 119.96413 * 180.25831 * 25 24 23 43 43 H 1.08008 * 119.92157 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.96588 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.03586 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2288 6 6 2.3604 0.0119 -2.3579 7 7 2.7061 -0.6134 -3.4621 8 14 2.3138 1.8789 -2.3174 9 1 3.5994 2.3946 -1.7821 10 1 2.1061 2.3987 -3.6928 11 1 1.1988 2.3274 -1.4452 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8573 1.1617 2.4118 15 6 2.6388 -0.7129 3.5610 16 6 2.9732 -2.0683 3.5030 17 6 3.4327 -2.7117 4.6311 18 6 3.5652 -2.0218 5.8261 19 6 3.2449 -0.6817 5.8983 20 6 2.7742 -0.0170 4.7724 21 7 2.4450 1.3309 4.8440 22 6 1.0801 1.7340 5.1917 23 6 3.4156 2.3019 4.5842 24 6 3.0882 3.6501 4.6559 25 6 4.0515 4.6072 4.4047 26 6 5.3393 4.2249 4.0765 27 6 5.6673 2.8837 3.9991 28 6 4.7089 1.9213 4.2491 29 1 -0.3634 -1.0238 -0.0889 30 1 -0.3634 0.4351 0.9310 31 1 -0.3633 0.5889 -0.8422 32 1 2.9372 -0.1052 -4.2552 33 1 2.2489 -1.6317 1.1528 34 1 2.8713 -2.6111 2.5749 35 1 3.6912 -3.7592 4.5843 36 1 3.9267 -2.5350 6.7047 37 1 3.3557 -0.1501 6.8317 38 1 0.4852 1.8243 4.2829 39 1 0.6347 0.9834 5.8445 40 1 1.1050 2.6945 5.7065 41 1 2.0825 3.9494 4.9121 42 1 3.7987 5.6555 4.4643 43 1 6.0909 4.9755 3.8809 44 1 6.6741 2.5885 3.7429 45 1 4.9656 0.8741 4.1881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194640726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:15:59 Heat of formation + Delta-G solvation = 19.892298 kcal Electronic energy + Delta-G solvation = -27708.812466 eV Core-core repulsion = 24076.870820 eV Total energy + Delta-G solvation = -3631.941647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64916 -40.16717 -39.18812 -37.08008 -36.48814 -34.43097 -32.80376 -32.13417 -31.37743 -30.87641 -30.20899 -27.38711 -27.02879 -25.02901 -23.89778 -23.09715 -22.68919 -21.44783 -21.25424 -19.63147 -18.78689 -18.18770 -17.42972 -17.30544 -16.49897 -16.46429 -16.10829 -15.80487 -15.69165 -15.46053 -15.15520 -14.78347 -14.66042 -14.57419 -14.37397 -14.34035 -14.20966 -13.50158 -13.46775 -13.11509 -13.08895 -13.08256 -12.85025 -12.79678 -12.47844 -12.41749 -12.23169 -11.92490 -11.76364 -11.28116 -11.00500 -10.89187 -10.54647 -10.05717 -9.84775 -9.79819 -9.68709 -8.43513 -8.24405 -6.48987 -0.15734 0.27935 0.56178 0.75066 1.23621 1.28558 1.39017 2.01114 2.18429 2.22100 2.42293 2.84981 2.99978 3.03228 3.83603 3.86394 3.94036 4.11983 4.13881 4.24251 4.32417 4.39836 4.41992 4.43461 4.51997 4.60847 4.64488 4.67816 4.75005 4.77944 4.86874 4.88545 4.93125 5.05058 5.15792 5.27796 5.32235 5.39684 5.42596 5.44465 5.46060 5.60999 5.71811 5.74357 5.81358 6.01808 6.09926 6.47744 6.55018 6.67356 6.88535 7.17284 7.44820 8.71515 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.005052 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.843731 B = 5541.094394 C = 6972.863437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.239 3.761 3 H 0.025 0.975 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.038 3.962 7 N -0.926 5.926 8 Si 0.924 3.076 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.260 1.260 12 N -0.703 5.703 13 C 0.537 3.463 14 O -0.567 6.567 15 C -0.159 4.159 16 C -0.088 4.088 17 C -0.117 4.117 18 C -0.077 4.077 19 C -0.128 4.128 20 C 0.184 3.816 21 N -0.580 5.580 22 C 0.104 3.896 23 C 0.225 3.775 24 C -0.207 4.207 25 C -0.081 4.081 26 C -0.191 4.191 27 C -0.086 4.086 28 C -0.210 4.210 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.271 0.729 33 H 0.401 0.599 34 H 0.135 0.865 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.143 0.857 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 0.473 23.161 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.135 3.865 3 H 0.043 0.957 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.163 4.163 7 N -0.565 5.565 8 Si 0.749 3.251 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.184 1.184 12 N -0.353 5.353 13 C 0.325 3.675 14 O -0.448 6.448 15 C -0.164 4.164 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.148 4.148 20 C 0.091 3.909 21 N -0.286 5.286 22 C -0.038 4.038 23 C 0.125 3.875 24 C -0.229 4.229 25 C -0.099 4.099 26 C -0.211 4.211 27 C -0.105 4.105 28 C -0.232 4.232 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.153 0.847 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.984 1.238 22.996 23.114 hybrid contribution -0.011 0.331 -1.064 1.114 sum 1.973 1.569 21.932 22.076 Atomic orbital electron populations 1.22071 0.97096 1.01157 0.99243 1.18825 0.91888 0.92861 0.82905 0.95682 1.21167 1.44385 0.94814 0.96002 0.92347 1.25525 0.93769 1.01968 0.95042 1.69960 1.46533 1.37590 1.02398 0.86106 0.79380 0.81913 0.77674 1.20576 1.19845 1.18407 1.46341 1.65445 1.14207 1.09291 1.18704 0.78209 0.86731 0.83902 1.90718 1.51932 1.16571 1.85572 1.20623 1.06131 0.95886 0.93763 1.21547 0.96598 0.92041 1.00544 1.21524 0.98458 1.01848 0.91597 1.21650 0.95862 0.92906 0.99096 1.21647 0.99649 0.95774 0.97683 1.17599 0.97276 0.83996 0.91980 1.43319 1.09421 1.01079 1.74743 1.21637 0.81083 1.01659 0.99392 1.17880 0.88173 0.88899 0.92531 1.20857 1.00938 0.90987 1.10086 1.21193 0.92780 0.99688 0.96285 1.21167 0.97550 0.95992 1.06414 1.21130 0.99111 0.93219 0.96994 1.20702 0.93239 0.99494 1.09798 0.92364 0.94696 0.93445 0.91947 0.76354 0.84713 0.81883 0.81458 0.83890 0.95135 0.90279 0.89628 0.85322 0.83974 0.84484 0.84961 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.09 9.47 71.98 0.68 -5.41 16 2 C 0.24 11.73 2.22 44.24 0.10 11.83 16 3 H 0.03 1.37 4.73 -2.39 -0.01 1.36 16 4 C -0.53 -29.00 9.05 25.60 0.23 -28.77 16 5 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 6 C 0.04 2.17 5.47 84.65 0.46 2.63 16 7 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 8 Si 0.92 46.26 26.99 68.60 1.85 48.11 16 9 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.26 -12.83 6.82 99.48 0.68 -12.15 16 12 N -0.70 -29.56 5.02 -449.39 -2.26 -31.82 16 13 C 0.54 21.91 7.73 86.67 0.67 22.58 16 14 O -0.57 -26.54 12.81 -4.07 -0.05 -26.59 16 15 C -0.16 -5.05 5.89 -19.98 -0.12 -5.16 16 16 C -0.09 -2.14 9.53 22.52 0.21 -1.93 16 17 C -0.12 -1.96 10.02 22.25 0.22 -1.74 16 18 C -0.08 -1.16 10.03 22.30 0.22 -0.93 16 19 C -0.13 -2.61 9.96 22.38 0.22 -2.38 16 20 C 0.18 5.22 3.49 38.71 0.13 5.35 16 21 N -0.58 -17.54 1.59 -529.78 -0.84 -18.38 16 22 C 0.10 2.72 9.83 127.77 1.26 3.97 16 23 C 0.23 7.34 5.68 38.21 0.22 7.56 16 24 C -0.21 -6.17 9.21 22.40 0.21 -5.96 16 25 C -0.08 -2.17 10.04 22.25 0.22 -1.94 16 26 C -0.19 -5.12 10.04 22.29 0.22 -4.89 16 27 C -0.09 -2.50 10.04 22.25 0.22 -2.28 16 28 C -0.21 -6.86 9.31 22.40 0.21 -6.65 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.40 14.88 6.62 -92.70 -0.61 14.26 16 34 H 0.14 3.09 6.40 -2.91 -0.02 3.07 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.17 1.24 8.06 -2.92 -0.02 1.22 16 37 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.03 0.97 7.17 -2.39 -0.02 0.96 16 39 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 40 H 0.09 1.85 6.20 -2.39 -0.01 1.84 16 41 H 0.13 3.42 6.15 -2.91 -0.02 3.41 16 42 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 45 H 0.11 3.49 6.99 -2.91 -0.02 3.47 16 Total: -1.00 -73.00 369.84 4.97 -68.03 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.37 Total: 30.21 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.60 Total: -14.14 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -2.80 Total: -105.62 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.85 Total: 48.11 kcal Total: -73.00 4.97 -68.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.920 kcal (2) G-P(sol) polarization free energy of solvation -72.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds