Wall clock time and date at job start Sat Apr 11 2020 01:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47489 * 2 1 4 4 C 1.50701 * 109.47242 * 240.00456 * 2 1 3 5 5 H 1.08005 * 119.99783 * 274.34260 * 4 2 1 6 6 C 1.37875 * 120.00484 * 94.33191 * 4 2 1 7 7 N 1.31510 * 120.00484 * 183.79338 * 6 4 2 8 8 Si 1.86802 * 119.99592 * 3.79601 * 6 4 2 9 9 H 1.48497 * 109.47208 * 93.57134 * 8 6 4 10 10 H 1.48503 * 109.47223 * 213.57550 * 8 6 4 11 11 H 1.48500 * 109.47314 * 333.57190 * 8 6 4 12 12 N 1.46497 * 109.47110 * 120.00604 * 2 1 3 13 13 C 1.46500 * 120.00260 * 59.99601 * 12 2 1 14 14 C 1.34782 * 119.99883 * 239.99994 * 12 2 1 15 15 O 1.21534 * 119.99870 * 4.46423 * 14 12 2 16 16 C 1.47897 * 119.99647 * 184.46823 * 14 12 2 17 17 C 1.38899 * 121.11570 * 311.04271 * 16 14 12 18 18 C 1.39267 * 119.58313 * 180.02562 * 17 16 14 19 19 C 1.50694 * 119.05934 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.50071 * 343.70015 * 19 18 17 21 21 C 1.53003 * 117.49910 * 275.04321 * 19 18 17 22 22 N 1.30998 * 121.87962 * 359.93780 * 18 17 16 23 23 C 1.33527 * 121.83124 * 0.03998 * 22 18 17 24 24 C 1.40714 * 120.96698 * 179.97438 * 23 22 18 25 25 C 1.36061 * 119.74007 * 180.02562 * 24 23 22 26 26 C 1.39350 * 121.05445 * 0.02562 * 25 24 23 27 27 C 1.36246 * 120.84121 * 359.97438 * 26 25 24 28 28 C 1.40109 * 119.64191 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46877 * 294.90212 * 1 2 3 30 30 H 1.09008 * 109.46949 * 54.89338 * 1 2 3 31 31 H 1.08998 * 109.47147 * 174.89511 * 1 2 3 32 32 H 0.97001 * 120.00415 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47085 * 272.90627 * 13 12 2 34 34 H 1.08999 * 109.46938 * 32.89894 * 13 12 2 35 35 H 1.09001 * 109.47478 * 152.90062 * 13 12 2 36 36 H 1.07997 * 120.20678 * 359.97438 * 17 16 14 37 37 H 1.09001 * 115.54989 * 129.37747 * 19 18 17 38 38 H 1.09005 * 117.49567 * 0.02562 * 20 19 18 39 39 H 1.08999 * 117.49969 * 145.01523 * 20 19 18 40 40 H 1.09001 * 117.50090 * 214.98225 * 21 19 18 41 41 H 1.09005 * 117.49999 * 359.97438 * 21 19 18 42 42 H 1.08001 * 120.12929 * 0.02562 * 24 23 22 43 43 H 1.08002 * 119.47194 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.58231 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.18047 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1456 -1.7844 -1.2256 6 6 2.3473 0.0109 -2.3627 7 7 2.7142 -0.6145 -3.4598 8 14 2.2527 1.8763 -2.3380 9 1 3.5874 2.4352 -2.0041 10 1 1.8300 2.3683 -3.6739 11 1 1.2655 2.3085 -1.3163 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0201 1.1488 1.9338 16 6 3.3675 -0.7587 3.2387 17 6 2.5764 -1.5676 4.0445 18 6 3.1504 -2.2334 5.1247 19 6 2.2811 -3.1074 5.9915 20 6 0.7658 -2.9264 5.8827 21 6 1.5086 -2.4318 7.1263 22 7 4.4244 -2.1220 5.4084 23 6 5.2448 -1.3629 4.6779 24 6 6.6106 -1.2560 4.9995 25 6 7.4240 -0.4749 4.2383 26 6 6.9270 0.2253 3.1407 27 6 5.6104 0.1458 2.7994 28 6 4.7439 -0.6492 3.5611 29 1 -0.3633 0.4327 0.9321 30 1 -0.3633 0.5911 -0.8408 31 1 -0.3633 -1.0236 -0.0914 32 1 2.9361 -0.1071 -4.2562 33 1 0.7113 -2.1453 1.9542 34 1 1.5799 -2.6095 0.4716 35 1 2.4386 -2.5687 2.0302 36 1 1.5228 -1.6789 3.8351 37 1 2.6562 -4.1155 6.1685 38 1 0.3976 -2.1753 5.1837 39 1 0.1438 -3.8153 5.9882 40 1 1.3751 -2.9955 8.0496 41 1 1.6294 -1.3551 7.2462 42 1 7.0115 -1.7919 5.8471 43 1 8.4717 -0.3963 4.4887 44 1 7.5941 0.8381 2.5526 45 1 5.2367 0.6927 1.9464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264066181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:16:17 Heat of formation + Delta-G solvation = 53.717403 kcal Electronic energy + Delta-G solvation = -27523.462043 eV Core-core repulsion = 23892.987163 eV Total energy + Delta-G solvation = -3630.474880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15997 -39.07122 -38.22172 -36.06179 -35.61198 -33.65276 -32.57809 -30.70649 -30.34914 -29.63134 -26.50331 -25.43319 -25.14824 -24.21933 -23.02598 -22.46129 -21.57581 -20.58288 -18.63997 -17.94643 -17.58917 -17.19491 -16.69209 -16.02980 -15.54828 -15.34592 -14.98267 -14.57081 -14.27980 -14.18069 -14.08030 -13.77728 -13.33883 -13.12722 -12.62034 -12.43351 -12.42052 -12.30112 -12.05610 -11.86761 -11.75363 -11.52840 -11.40965 -11.26668 -11.13332 -10.79801 -10.69303 -10.60593 -10.55636 -10.38285 -9.89297 -9.81666 -9.36566 -9.08846 -8.68991 -8.66221 -8.18014 -7.84281 -6.24413 -4.27673 0.24546 0.77724 1.86309 2.78914 3.13387 3.24705 3.32710 3.38660 3.51176 3.60934 3.91483 4.16420 4.30639 4.51197 4.63471 4.66921 4.68440 4.83799 4.88368 4.93826 5.09750 5.14165 5.20366 5.31747 5.41917 5.48548 5.58320 5.60632 5.68690 5.80886 5.84368 5.87834 5.92079 6.03916 6.08062 6.19092 6.26956 6.31484 6.33508 6.47652 6.52348 6.53536 6.82322 6.85109 6.97488 7.32835 7.51364 7.87850 7.95255 8.36429 8.65418 8.77475 9.36919 10.87160 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.004578 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.809623 B = 6115.219433 C = 7706.602559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.220 3.780 3 H 0.068 0.932 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.573 5.573 13 C 0.074 3.926 14 C 0.546 3.454 15 O -0.542 6.542 16 C -0.042 4.042 17 C -0.147 4.147 18 C 0.186 3.814 19 C -0.108 4.108 20 C -0.173 4.173 21 C -0.161 4.161 22 N -0.465 5.465 23 C 0.134 3.866 24 C -0.102 4.102 25 C -0.095 4.095 26 C -0.122 4.122 27 C -0.079 4.079 28 C -0.075 4.075 29 H 0.027 0.973 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.146 0.854 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -4.290 18.313 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 H 0.086 0.914 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.303 5.303 13 C -0.070 4.070 14 C 0.332 3.668 15 O -0.421 6.421 16 C -0.053 4.053 17 C -0.167 4.167 18 C 0.034 3.966 19 C -0.127 4.127 20 C -0.210 4.210 21 C -0.199 4.199 22 N -0.173 5.173 23 C 0.012 3.988 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.140 4.140 27 C -0.097 4.097 28 C -0.077 4.077 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.880 -4.061 18.665 19.194 hybrid contribution -0.308 1.244 -0.932 1.585 sum 1.571 -2.817 17.733 18.024 Atomic orbital electron populations 1.22208 0.97984 1.01036 0.99253 1.19471 0.91093 0.95071 0.82318 0.91413 1.21092 1.45120 0.95837 0.94521 0.90255 1.24941 0.93640 0.98492 0.95228 1.69881 1.44572 1.36113 1.01894 0.86922 0.79705 0.86075 0.77485 1.19828 1.21088 1.18402 1.48340 1.47668 1.11836 1.22409 1.21887 0.99078 0.82981 1.03029 1.18099 0.79722 0.86808 0.82145 1.90740 1.61078 1.14889 1.75386 1.20641 0.93393 0.95358 0.95956 1.22245 1.01695 0.96953 0.95852 1.20357 0.90032 0.93926 0.92250 1.20791 0.91668 0.99437 1.00758 1.23147 0.92942 1.03942 1.00983 1.22978 1.02697 1.01186 0.93010 1.67453 1.04064 1.17219 1.28602 1.18743 0.94190 0.94293 0.91555 1.20719 0.90743 0.99958 1.00644 1.20925 0.99974 0.95886 0.94735 1.20988 0.95575 0.99958 0.97508 1.21322 0.93203 0.96114 0.99082 1.18656 0.92929 0.99176 0.96973 0.95417 0.92455 0.93007 0.92284 0.93295 0.89669 0.92044 0.83681 0.85761 0.88129 0.87747 0.88061 0.88674 0.84740 0.85293 0.85331 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.10 37.16 0.34 -2.63 16 2 C 0.22 5.16 2.23 -69.08 -0.15 5.01 16 3 H 0.07 1.74 3.95 -51.93 -0.21 1.53 16 4 C -0.53 -14.08 8.74 -34.44 -0.30 -14.38 16 5 H 0.08 2.25 6.79 -52.48 -0.36 1.89 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 8 Si 0.87 21.49 27.12 -169.99 -4.61 16.88 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -6.20 6.48 56.52 0.37 -5.83 16 12 N -0.57 -11.75 2.75 -176.36 -0.49 -12.24 16 13 C 0.07 1.21 8.29 59.85 0.50 1.71 16 14 C 0.55 11.31 6.72 -12.30 -0.08 11.22 16 15 O -0.54 -12.85 14.79 5.34 0.08 -12.77 16 16 C -0.04 -0.74 4.95 -104.34 -0.52 -1.26 16 17 C -0.15 -2.12 6.95 -38.95 -0.27 -2.39 16 18 C 0.19 2.53 6.46 -82.57 -0.53 1.99 16 19 C -0.11 -1.09 6.19 -91.77 -0.57 -1.66 16 20 C -0.17 -1.41 9.78 -26.70 -0.26 -1.68 16 21 C -0.16 -1.38 10.24 -26.69 -0.27 -1.66 16 22 N -0.46 -6.97 10.19 -7.25 -0.07 -7.05 16 23 C 0.13 2.09 6.61 -84.87 -0.56 1.53 16 24 C -0.10 -1.32 9.98 -39.43 -0.39 -1.71 16 25 C -0.10 -1.11 9.94 -39.95 -0.40 -1.51 16 26 C -0.12 -1.65 9.96 -39.88 -0.40 -2.04 16 27 C -0.08 -1.33 9.22 -39.60 -0.36 -1.69 16 28 C -0.07 -1.29 5.76 -106.52 -0.61 -1.90 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.18 8.03 -51.92 -0.42 0.76 16 31 H 0.05 0.97 7.84 -51.93 -0.41 0.57 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.05 0.66 7.61 -51.93 -0.40 0.26 16 34 H 0.08 1.50 6.54 -51.93 -0.34 1.16 16 35 H 0.06 0.93 5.69 -51.93 -0.30 0.63 16 36 H 0.15 1.80 4.77 -52.49 -0.25 1.55 16 37 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 0.86 6.34 -51.93 -0.33 0.53 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.14 2.70 6.31 -52.49 -0.33 2.37 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -32.18 363.15 -9.68 -41.86 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.88 Total: 4.04 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -4.95 Total: -10.88 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.21 Total: -44.60 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.61 Total: 16.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.18 -9.68 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264066181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.575 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds